Search results for the GEO ID: GSE28160  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM697483 | GPL570 |
|
Control brain 1, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: uninfected
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697483
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697483/suppl/GSM697483_531_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697484 | GPL570 |
|
Control brain 2, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: uninfected
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697484
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697484/suppl/GSM697484_551_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697485 | GPL570 |
|
Control brain 3, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: uninfected
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697485
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697485/suppl/GSM697485_567_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697486 | GPL570 |
|
Control brain 4, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: uninfected
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697486
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697486/suppl/GSM697486_588_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697487 | GPL570 |
|
Control brain 4, biological rep2
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: uninfected
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697487
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697487/suppl/GSM697487_588_D2.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697488 | GPL570 |
|
Control brain 5, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: uninfected
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697488
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697488/suppl/GSM697488_594_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697489 | GPL570 |
|
Control brain 5, biological rep2
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: uninfected
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697489
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697489/suppl/GSM697489_594_D2.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697490 | GPL570 |
|
Control brain 6, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: uninfected
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697490
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697490/suppl/GSM697490_601_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697491 | GPL570 |
|
Control brain 6, biological rep2
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: uninfected
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697491
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697491/suppl/GSM697491_601_D2.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697492 | GPL570 |
|
Untreated HAND brain 1, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697492
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697492/suppl/GSM697492_500_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697493 | GPL570 |
|
Untreated HAND brain 1, biological rep2
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697493
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697493/suppl/GSM697493_500_D2.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697494 | GPL570 |
|
Untreated HAND brain 2, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697494
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697494/suppl/GSM697494_537_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697495 | GPL570 |
|
Untreated HAND brain 3, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697495
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697495/suppl/GSM697495_10011_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697496 | GPL570 |
|
Untreated HAND brain 3, biological rep2
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697496
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697496/suppl/GSM697496_10011_D2.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697497 | GPL570 |
|
Untreated HAND brain 4, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697497
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697497/suppl/GSM697497_10017_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697498 | GPL570 |
|
Untreated HAND brain 5, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697498
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697498/suppl/GSM697498_10070_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697499 | GPL570 |
|
Untreated HAND brain 5, biological rep2
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697499
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697499/suppl/GSM697499_10070_D2.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697500 | GPL570 |
|
Untreated HAND brain 6, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697500
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697500/suppl/GSM697500_10119_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697501 | GPL570 |
|
Untreated HAND brain 6 biological rep2
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697501
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697501/suppl/GSM697501_10119_D2.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697502 | GPL570 |
|
Untreated HAND brain 7, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697502
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697502/suppl/GSM697502_30013_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697503 | GPL570 |
|
Untreated HAND brain 7, biological rep2
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697503
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697503/suppl/GSM697503_30013_D2.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697504 | GPL570 |
|
Untreated HAND brain 8, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697504
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697504/suppl/GSM697504_30015_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697505 | GPL570 |
|
Untreated HAND brain 8, biological rep2
|
Homo sapiens postmortem brain tissue
|
treatment: untreated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697505
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697505/suppl/GSM697505_30015_D2.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697506 | GPL570 |
|
Treated HAND brain 1, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: antiretroviral treated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697506
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697506/suppl/GSM697506_509_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697507 | GPL570 |
|
Treated HAND brain 2, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: antiretroviral treated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697507
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697507/suppl/GSM697507_10001_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697508 | GPL570 |
|
Treated HAND brain 2, biological rep2
|
Homo sapiens postmortem brain tissue
|
treatment: antiretroviral treated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697508
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697508/suppl/GSM697508_10001_D2.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697509 | GPL570 |
|
Treated HAND brain 3, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: antiretroviral treated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697509
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697509/suppl/GSM697509_10015_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697510 | GPL570 |
|
Treated HAND brain 3, biological rep2
|
Homo sapiens postmortem brain tissue
|
treatment: antiretroviral treated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697510
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697510/suppl/GSM697510_10015_D2.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697511 | GPL570 |
|
Treated HAND brain 4, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: antiretroviral treated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697511
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697511/suppl/GSM697511_10063_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697512 | GPL570 |
|
Treated HAND brain 4, biological rep2
|
Homo sapiens postmortem brain tissue
|
treatment: antiretroviral treated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697512
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697512/suppl/GSM697512_10063_D2.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697513 | GPL570 |
|
Treated HAND brain 5, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: antiretroviral treated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697513
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697513/suppl/GSM697513_10103_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697514 | GPL570 |
|
Treated HAND brain 5, biological rep2
|
Homo sapiens postmortem brain tissue
|
treatment: antiretroviral treated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697514
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697514/suppl/GSM697514_10103_D2.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697515 | GPL570 |
|
Treated HAND brain 6, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: antiretroviral treated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697515
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697515/suppl/GSM697515_10133_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697516 | GPL570 |
|
Treated HAND brain 7, biological rep1
|
Homo sapiens postmortem brain tissue
|
treatment: antiretroviral treated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697516
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697516/suppl/GSM697516_20024_D1.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
| | |
|
GSM697517 | GPL570 |
|
Treated HAND brain 7, biological rep2
|
Homo sapiens postmortem brain tissue
|
treatment: antiretroviral treated
tissue: postmortem brain
disease state: HIV1 with HIV-1-associated neurocognitive disorders
|
gene expression data for portmortem brain tissue uninfected patients
|
| Sample_geo_accession | GSM697517
| | Sample_status | Public on Sep 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Sep 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from human brain tissue by RNeasy Mini Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeling using NuGen Encore Biotin Module.
| | Sample_hyb_protocol | The samples were hybridized to Affymetrix Human Genome 133 plus 2.0 arrays. Washing and staining of all arrays were carried out in the Affymetrix fluidics module as per the manufacturer's protocol.
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner.
| | Sample_data_processing | The .cel data files generated by the Affymetrix microarray hybridization platform were analyzed by the ArrayAssist software (Stratagene, Santa Clara, CA). Probe level analysis was performed using the Robust Microarray Average (RMA) algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alejandra,,Borjabad
| | Sample_contact_email | ab2612@columbia.edu
| | Sample_contact_phone | 9175574628
| | Sample_contact_laboratory | Molecular Virology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | St.Luke's-Roosevelt Hospital Center
| | Sample_contact_address | 432 West 58th, Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10019
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697517/suppl/GSM697517_20024_D2.CEL.gz
| | Sample_series_id | GSE28160
| | Sample_data_row_count | 54675
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