Search results for the GEO ID: GSE28167  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM697600 | GPL570 |
|
U251 aligned 1
|
human glioma cells
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cell line: Brain U251MG glioma cells
treatment: cultured on highly-aligned electrospun nanofibers of poly-caprolactone
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| Sample_geo_accession | GSM697600
| | Sample_status | Public on Mar 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Mar 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were plated on nanofibers and allowed to grow and migrate without further treatments for 24h until collection.
| | Sample_growth_protocol_ch1 | Cells (5x10E5) were dissociated and cultured on nanofiber-coated 60mm-dishes for 24h before RNA collection. Culture medium was DMEM with 10% fetal bovine serum and standard antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated from cells cultured on nanofibers using Trizol (Invitrogen) and RNAeasy kit (Qiagen), according to manufacturers' instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 10ug total RNA, according to the standard Affymetrix protocol (Expression Analysis Technical Manual, Affymetrix, 2001)
| | Sample_hyb_protocol | Standard Affymetrix procedures performed at the Ohio State University Microarray Shared Resource (http://www.osuccc.osu.edu/microarray)
| | Sample_scan_protocol | Standard Affymetrix procedures performed at the Ohio State University Microarray Shared Resource (http://www.osuccc.osu.edu/microarray)
| | Sample_data_processing | The data were analyzed with Robust Multichip Average (RMA) procedure using quantile normalization .
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mariano,Sebastian,Viapiano
| | Sample_contact_email | viapiano.1@osu.edu
| | Sample_contact_phone | 614-292-4362
| | Sample_contact_fax | 614-292-5379
| | Sample_contact_department | Neurological Surgery
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 1060 Carmack Rd
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.viapianolab.org
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697600/suppl/GSM697600_01_A48-1.CEL.gz
| | Sample_series_id | GSE28167
| | Sample_data_row_count | 54675
| | |
|
GSM697601 | GPL570 |
|
U251 aligned 2
|
human glioma cells
|
cell line: Brain U251MG glioma cells
treatment: cultured on highly-aligned electrospun nanofibers of poly-caprolactone
|
|
| Sample_geo_accession | GSM697601
| | Sample_status | Public on Mar 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Mar 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were plated on nanofibers and allowed to grow and migrate without further treatments for 24h until collection.
| | Sample_growth_protocol_ch1 | Cells (5x10E5) were dissociated and cultured on nanofiber-coated 60mm-dishes for 24h before RNA collection. Culture medium was DMEM with 10% fetal bovine serum and standard antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated from cells cultured on nanofibers using Trizol (Invitrogen) and RNAeasy kit (Qiagen), according to manufacturers' instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 10ug total RNA, according to the standard Affymetrix protocol (Expression Analysis Technical Manual, Affymetrix, 2001)
| | Sample_hyb_protocol | Standard Affymetrix procedures performed at the Ohio State University Microarray Shared Resource (http://www.osuccc.osu.edu/microarray)
| | Sample_scan_protocol | Standard Affymetrix procedures performed at the Ohio State University Microarray Shared Resource (http://www.osuccc.osu.edu/microarray)
| | Sample_data_processing | The data were analyzed with Robust Multichip Average (RMA) procedure using quantile normalization .
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mariano,Sebastian,Viapiano
| | Sample_contact_email | viapiano.1@osu.edu
| | Sample_contact_phone | 614-292-4362
| | Sample_contact_fax | 614-292-5379
| | Sample_contact_department | Neurological Surgery
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 1060 Carmack Rd
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.viapianolab.org
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697601/suppl/GSM697601_05_A48-2.CEL.gz
| | Sample_series_id | GSE28167
| | Sample_data_row_count | 54675
| | |
|
GSM697602 | GPL570 |
|
U251 aligned 3
|
human glioma cells
|
cell line: Brain U251MG glioma cells
treatment: cultured on highly-aligned electrospun nanofibers of poly-caprolactone
|
|
| Sample_geo_accession | GSM697602
| | Sample_status | Public on Mar 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Mar 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were plated on nanofibers and allowed to grow and migrate without further treatments for 24h until collection.
| | Sample_growth_protocol_ch1 | Cells (5x10E5) were dissociated and cultured on nanofiber-coated 60mm-dishes for 24h before RNA collection. Culture medium was DMEM with 10% fetal bovine serum and standard antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated from cells cultured on nanofibers using Trizol (Invitrogen) and RNAeasy kit (Qiagen), according to manufacturers' instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 10ug total RNA, according to the standard Affymetrix protocol (Expression Analysis Technical Manual, Affymetrix, 2001)
| | Sample_hyb_protocol | Standard Affymetrix procedures performed at the Ohio State University Microarray Shared Resource (http://www.osuccc.osu.edu/microarray)
| | Sample_scan_protocol | Standard Affymetrix procedures performed at the Ohio State University Microarray Shared Resource (http://www.osuccc.osu.edu/microarray)
| | Sample_data_processing | The data were analyzed with Robust Multichip Average (RMA) procedure using quantile normalization .
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mariano,Sebastian,Viapiano
| | Sample_contact_email | viapiano.1@osu.edu
| | Sample_contact_phone | 614-292-4362
| | Sample_contact_fax | 614-292-5379
| | Sample_contact_department | Neurological Surgery
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 1060 Carmack Rd
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.viapianolab.org
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697602/suppl/GSM697602_06_A72-2.CEL.gz
| | Sample_series_id | GSE28167
| | Sample_data_row_count | 54675
| | |
|
GSM697603 | GPL570 |
|
U251 random 1
|
human glioma cells
|
cell line: Brain U251MG glioma cells
treatment: cultured on randomly-oriented electrospun nanofibers of poly-caprolactone
|
|
| Sample_geo_accession | GSM697603
| | Sample_status | Public on Mar 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Mar 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were plated on nanofibers and allowed to grow and migrate without further treatments for 24h until collection.
| | Sample_growth_protocol_ch1 | Cells (5x10E5) were dissociated and cultured on nanofiber-coated 60mm-dishes for 24h before RNA collection. Culture medium was DMEM with 10% fetal bovine serum and standard antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated from cells cultured on nanofibers using Trizol (Invitrogen) and RNAeasy kit (Qiagen), according to manufacturers' instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 10ug total RNA, according to the standard Affymetrix protocol (Expression Analysis Technical Manual, Affymetrix, 2001)
| | Sample_hyb_protocol | Standard Affymetrix procedures performed at the Ohio State University Microarray Shared Resource (http://www.osuccc.osu.edu/microarray)
| | Sample_scan_protocol | Standard Affymetrix procedures performed at the Ohio State University Microarray Shared Resource (http://www.osuccc.osu.edu/microarray)
| | Sample_data_processing | The data were analyzed with Robust Multichip Average (RMA) procedure using quantile normalization .
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mariano,Sebastian,Viapiano
| | Sample_contact_email | viapiano.1@osu.edu
| | Sample_contact_phone | 614-292-4362
| | Sample_contact_fax | 614-292-5379
| | Sample_contact_department | Neurological Surgery
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 1060 Carmack Rd
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.viapianolab.org
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697603/suppl/GSM697603_03_R48-1.CEL.gz
| | Sample_series_id | GSE28167
| | Sample_data_row_count | 54675
| | |
|
GSM697604 | GPL570 |
|
U251 random 2
|
human glioma cells
|
cell line: Brain U251MG glioma cells
treatment: cultured on randomly-oriented electrospun nanofibers of poly-caprolactone
|
|
| Sample_geo_accession | GSM697604
| | Sample_status | Public on Mar 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Mar 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were plated on nanofibers and allowed to grow and migrate without further treatments for 24h until collection.
| | Sample_growth_protocol_ch1 | Cells (5x10E5) were dissociated and cultured on nanofiber-coated 60mm-dishes for 24h before RNA collection. Culture medium was DMEM with 10% fetal bovine serum and standard antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated from cells cultured on nanofibers using Trizol (Invitrogen) and RNAeasy kit (Qiagen), according to manufacturers' instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 10ug total RNA, according to the standard Affymetrix protocol (Expression Analysis Technical Manual, Affymetrix, 2001)
| | Sample_hyb_protocol | Standard Affymetrix procedures performed at the Ohio State University Microarray Shared Resource (http://www.osuccc.osu.edu/microarray)
| | Sample_scan_protocol | Standard Affymetrix procedures performed at the Ohio State University Microarray Shared Resource (http://www.osuccc.osu.edu/microarray)
| | Sample_data_processing | The data were analyzed with Robust Multichip Average (RMA) procedure using quantile normalization .
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mariano,Sebastian,Viapiano
| | Sample_contact_email | viapiano.1@osu.edu
| | Sample_contact_phone | 614-292-4362
| | Sample_contact_fax | 614-292-5379
| | Sample_contact_department | Neurological Surgery
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 1060 Carmack Rd
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.viapianolab.org
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697604/suppl/GSM697604_07_R48-2.CEL.gz
| | Sample_series_id | GSE28167
| | Sample_data_row_count | 54675
| | |
|
GSM697605 | GPL570 |
|
U251 random 3
|
human glioma cells
|
cell line: Brain U251MG glioma cells
treatment: cultured on randomly-oriented electrospun nanofibers of poly-caprolactone
|
|
| Sample_geo_accession | GSM697605
| | Sample_status | Public on Mar 25 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Mar 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were plated on nanofibers and allowed to grow and migrate without further treatments for 24h until collection.
| | Sample_growth_protocol_ch1 | Cells (5x10E5) were dissociated and cultured on nanofiber-coated 60mm-dishes for 24h before RNA collection. Culture medium was DMEM with 10% fetal bovine serum and standard antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated from cells cultured on nanofibers using Trizol (Invitrogen) and RNAeasy kit (Qiagen), according to manufacturers' instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 10ug total RNA, according to the standard Affymetrix protocol (Expression Analysis Technical Manual, Affymetrix, 2001)
| | Sample_hyb_protocol | Standard Affymetrix procedures performed at the Ohio State University Microarray Shared Resource (http://www.osuccc.osu.edu/microarray)
| | Sample_scan_protocol | Standard Affymetrix procedures performed at the Ohio State University Microarray Shared Resource (http://www.osuccc.osu.edu/microarray)
| | Sample_data_processing | The data were analyzed with Robust Multichip Average (RMA) procedure using quantile normalization .
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mariano,Sebastian,Viapiano
| | Sample_contact_email | viapiano.1@osu.edu
| | Sample_contact_phone | 614-292-4362
| | Sample_contact_fax | 614-292-5379
| | Sample_contact_department | Neurological Surgery
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 1060 Carmack Rd
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.viapianolab.org
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697605/suppl/GSM697605_08_R72-2.CEL.gz
| | Sample_series_id | GSE28167
| | Sample_data_row_count | 54675
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