Search results for the GEO ID: GSE28203 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM698403 | GPL1261 |
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Tumor #1 with loss of p53
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Mouse oral tumor from K-p53-/- mice
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tissue: Oral tumor
genotype/variation: p53-/-
age: 1 year
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Gene expression data from oral tumors from K-p53-/- mice
|
Sample_geo_accession | GSM698403
| Sample_status | Public on Mar 31 2012
| Sample_submission_date | Mar 28 2011
| Sample_last_update_date | Mar 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was purified using RNeasy Mini Kit according to the manufacturer’s instructions (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Mouse430_2 GeneChip following the recommended procedures.
| Sample_scan_protocol | The arrays were scanned using an Affymetrix Gene Chip Scanner 2500
| Sample_data_processing | The signal was quantified with Affymetrix Microarray Suite 5.0 and analyzed following the model-based expression method implemented by dChip after normalization using the invariant set method
| Sample_platform_id | GPL1261
| Sample_contact_name | Carlos,,Caulin
| Sample_contact_email | ccaulin@mdanderson.org
| Sample_contact_phone | 713-7945603
| Sample_contact_institute | MD Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe Blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698403/suppl/GSM698403.cel.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698403/suppl/GSM698403.dcp.gz
| Sample_series_id | GSE28203
| Sample_data_row_count | 45101
| |
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GSM698404 | GPL1261 |
|
Tumor #2 with loss of p53
|
Mouse oral tumor from K-p53-/- mice
|
tissue: Oral tumor
genotype/variation: p53-/-
age: 1 year
|
Gene expression data from oral tumors from K-p53-/- mice
|
Sample_geo_accession | GSM698404
| Sample_status | Public on Mar 31 2012
| Sample_submission_date | Mar 28 2011
| Sample_last_update_date | Mar 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was purified using RNeasy Mini Kit according to the manufacturer’s instructions (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Mouse430_2 GeneChip following the recommended procedures.
| Sample_scan_protocol | The arrays were scanned using an Affymetrix Gene Chip Scanner 2500
| Sample_data_processing | The signal was quantified with Affymetrix Microarray Suite 5.0 and analyzed following the model-based expression method implemented by dChip after normalization using the invariant set method
| Sample_platform_id | GPL1261
| Sample_contact_name | Carlos,,Caulin
| Sample_contact_email | ccaulin@mdanderson.org
| Sample_contact_phone | 713-7945603
| Sample_contact_institute | MD Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe Blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698404/suppl/GSM698404.cel.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698404/suppl/GSM698404.dcp.gz
| Sample_series_id | GSE28203
| Sample_data_row_count | 45101
| |
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GSM698405 | GPL1261 |
|
Tumor #3 with loss of p53
|
Mouse oral tumor from K-p53-/- mice
|
tissue: Oral tumor
genotype/variation: p53-/-
age: 1 year
|
Gene expression data from oral tumors from K-p53-/- mice
|
Sample_geo_accession | GSM698405
| Sample_status | Public on Mar 31 2012
| Sample_submission_date | Mar 28 2011
| Sample_last_update_date | Mar 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was purified using RNeasy Mini Kit according to the manufacturer’s instructions (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Mouse430_2 GeneChip following the recommended procedures.
| Sample_scan_protocol | The arrays were scanned using an Affymetrix Gene Chip Scanner 2500
| Sample_data_processing | The signal was quantified with Affymetrix Microarray Suite 5.0 and analyzed following the model-based expression method implemented by dChip after normalization using the invariant set method
| Sample_platform_id | GPL1261
| Sample_contact_name | Carlos,,Caulin
| Sample_contact_email | ccaulin@mdanderson.org
| Sample_contact_phone | 713-7945603
| Sample_contact_institute | MD Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe Blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698405/suppl/GSM698405.cel.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698405/suppl/GSM698405.dcp.gz
| Sample_series_id | GSE28203
| Sample_data_row_count | 45101
| |
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GSM698406 | GPL1261 |
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Tumor #1 with p53R172H/- mutation
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Mouse oral tumor from K-p53R172H/- mice
|
tissue: Oral tumor
genotype/variation: p53R172H/-
age: 1 year
|
Gene expression data from oral tumors from K-p53R172H/- mice
|
Sample_geo_accession | GSM698406
| Sample_status | Public on Mar 31 2012
| Sample_submission_date | Mar 28 2011
| Sample_last_update_date | Mar 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was purified using RNeasy Mini Kit according to the manufacturer’s instructions (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Mouse430_2 GeneChip following the recommended procedures.
| Sample_scan_protocol | The arrays were scanned using an Affymetrix Gene Chip Scanner 2500
| Sample_data_processing | The signal was quantified with Affymetrix Microarray Suite 5.0 and analyzed following the model-based expression method implemented by dChip after normalization using the invariant set method
| Sample_platform_id | GPL1261
| Sample_contact_name | Carlos,,Caulin
| Sample_contact_email | ccaulin@mdanderson.org
| Sample_contact_phone | 713-7945603
| Sample_contact_institute | MD Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe Blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698406/suppl/GSM698406.cel.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698406/suppl/GSM698406.dcp.gz
| Sample_series_id | GSE28203
| Sample_data_row_count | 45101
| |
|
GSM698407 | GPL1261 |
|
Tumor #2 with p53R172H/- mutation
|
Mouse oral tumor from K-p53R172H/- mice
|
tissue: Oral tumor
genotype/variation: p53R172H/-
age: 1 year
|
Gene expression data from oral tumors from K-p53R172H/- mice
|
Sample_geo_accession | GSM698407
| Sample_status | Public on Mar 31 2012
| Sample_submission_date | Mar 28 2011
| Sample_last_update_date | Mar 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was purified using RNeasy Mini Kit according to the manufacturer’s instructions (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Mouse430_2 GeneChip following the recommended procedures.
| Sample_scan_protocol | The arrays were scanned using an Affymetrix Gene Chip Scanner 2500
| Sample_data_processing | The signal was quantified with Affymetrix Microarray Suite 5.0 and analyzed following the model-based expression method implemented by dChip after normalization using the invariant set method
| Sample_platform_id | GPL1261
| Sample_contact_name | Carlos,,Caulin
| Sample_contact_email | ccaulin@mdanderson.org
| Sample_contact_phone | 713-7945603
| Sample_contact_institute | MD Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe Blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698407/suppl/GSM698407.cel.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698407/suppl/GSM698407.dcp.gz
| Sample_series_id | GSE28203
| Sample_data_row_count | 45101
| |
|
GSM698408 | GPL1261 |
|
Tumor #3 with p53R172H/- mutation
|
Mouse oral tumor from K-p53R172H/- mice
|
tissue: Oral tumor
genotype/variation: p53R172H/-
age: 1 year
|
Gene expression data from oral tumors from K-p53R172H/- mice
|
Sample_geo_accession | GSM698408
| Sample_status | Public on Mar 31 2012
| Sample_submission_date | Mar 28 2011
| Sample_last_update_date | Mar 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was purified using RNeasy Mini Kit according to the manufacturer’s instructions (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Mouse430_2 GeneChip following the recommended procedures.
| Sample_scan_protocol | The arrays were scanned using an Affymetrix Gene Chip Scanner 2500
| Sample_data_processing | The signal was quantified with Affymetrix Microarray Suite 5.0 and analyzed following the model-based expression method implemented by dChip after normalization using the invariant set method
| Sample_platform_id | GPL1261
| Sample_contact_name | Carlos,,Caulin
| Sample_contact_email | ccaulin@mdanderson.org
| Sample_contact_phone | 713-7945603
| Sample_contact_institute | MD Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe Blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698408/suppl/GSM698408.cel.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698408/suppl/GSM698408.dcp.gz
| Sample_series_id | GSE28203
| Sample_data_row_count | 45101
| |
|
GSM698409 | GPL1261 |
|
Tumor #1 with p53R172H/+ mutation
|
Mouse oral tumor from K-p53R172H/+ mice
|
tissue: Oral tumor
genotype/variation: p53R172H/+
age: 1 year
|
Gene expression data from oral tumors from K-p53R172H/+ mice
|
Sample_geo_accession | GSM698409
| Sample_status | Public on Mar 31 2012
| Sample_submission_date | Mar 28 2011
| Sample_last_update_date | Mar 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was purified using RNeasy Mini Kit according to the manufacturer’s instructions (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Mouse430_2 GeneChip following the recommended procedures.
| Sample_scan_protocol | The arrays were scanned using an Affymetrix Gene Chip Scanner 2500
| Sample_data_processing | The signal was quantified with Affymetrix Microarray Suite 5.0 and analyzed following the model-based expression method implemented by dChip after normalization using the invariant set method
| Sample_platform_id | GPL1261
| Sample_contact_name | Carlos,,Caulin
| Sample_contact_email | ccaulin@mdanderson.org
| Sample_contact_phone | 713-7945603
| Sample_contact_institute | MD Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe Blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698409/suppl/GSM698409.cel.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698409/suppl/GSM698409.dcp.gz
| Sample_series_id | GSE28203
| Sample_data_row_count | 45101
| |
|
GSM698410 | GPL1261 |
|
Tumor #2 with p53R172H/+ mutation
|
Mouse oral tumor from K-p53R172H/+ mice
|
tissue: Oral tumor
genotype/variation: p53R172H/+
age: 1 year
|
Gene expression data from oral tumors from K-p53R172H/+ mice
|
Sample_geo_accession | GSM698410
| Sample_status | Public on Mar 31 2012
| Sample_submission_date | Mar 28 2011
| Sample_last_update_date | Mar 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was purified using RNeasy Mini Kit according to the manufacturer’s instructions (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Mouse430_2 GeneChip following the recommended procedures.
| Sample_scan_protocol | The arrays were scanned using an Affymetrix Gene Chip Scanner 2500
| Sample_data_processing | The signal was quantified with Affymetrix Microarray Suite 5.0 and analyzed following the model-based expression method implemented by dChip after normalization using the invariant set method
| Sample_platform_id | GPL1261
| Sample_contact_name | Carlos,,Caulin
| Sample_contact_email | ccaulin@mdanderson.org
| Sample_contact_phone | 713-7945603
| Sample_contact_institute | MD Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe Blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698410/suppl/GSM698410.cel.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698410/suppl/GSM698410.dcp.gz
| Sample_series_id | GSE28203
| Sample_data_row_count | 45101
| |
|
GSM698411 | GPL1261 |
|
Tumor #3 with p53R172H/+ mutation
|
Mouse oral tumor from K-p53R172H/+ mice
|
tissue: Oral tumor
genotype/variation: p53R172H/+
age: 1 year
|
Gene expression data from oral tumors from K-p53R172H/+ mice
|
Sample_geo_accession | GSM698411
| Sample_status | Public on Mar 31 2012
| Sample_submission_date | Mar 28 2011
| Sample_last_update_date | Mar 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was purified using RNeasy Mini Kit according to the manufacturer’s instructions (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Mouse430_2 GeneChip following the recommended procedures.
| Sample_scan_protocol | The arrays were scanned using an Affymetrix Gene Chip Scanner 2500
| Sample_data_processing | The signal was quantified with Affymetrix Microarray Suite 5.0 and analyzed following the model-based expression method implemented by dChip after normalization using the invariant set method
| Sample_platform_id | GPL1261
| Sample_contact_name | Carlos,,Caulin
| Sample_contact_email | ccaulin@mdanderson.org
| Sample_contact_phone | 713-7945603
| Sample_contact_institute | MD Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe Blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698411/suppl/GSM698411.cel.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM698nnn/GSM698411/suppl/GSM698411.dcp.gz
| Sample_series_id | GSE28203
| Sample_data_row_count | 45101
| |
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