Search results for the GEO ID: GSE2825  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM61807 | GPL341 |
|
Seguin_IDR_BrownNorway_Liver_control1
|
Brown Norway Control Liver
|
Organism: Rattus norvegicus
Strain: Brown Norway
Weight: 150-170 grams
Tissue: liver
Gender: male
Sacrifice Time: 6 hours
|
Control sample #1
|
| Sample_geo_accession | GSM61807
| | Sample_status | Public on Jun 21 2005
| | Sample_submission_date | Jun 18 2005
| | Sample_last_update_date | Jun 20 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 = Rats were given water (vehicle, n | 4) or 1 mL of D-penicillamine
| | Sample_treatment_protocol_ch1 | dissolved in tap water in a single dose of 150 mg/kg by oral
| | Sample_treatment_protocol_ch1 = gavage (n | 8).
| | Sample_growth_protocol_ch1 | Male Brown Norway (BN) rats weighing 150-
| | Sample_growth_protocol_ch1 | 170 g were purchased from Charles River (Montreal, QC). All
| | Sample_growth_protocol_ch1 | animals were housed in plastic cages (two/cage) with wooden
| | Sample_growth_protocol_ch1 | chips as bedding in a 12:12 h light:dark cycle at 22 °C. Rats
| | Sample_growth_protocol_ch1 | were given access to standard rat chow (Agribrands, Purina
| | Sample_growth_protocol_ch1 | Canada, Strathroy, ON) and ad libitum access to tap water for
| | Sample_growth_protocol_ch1 | 1 week (acclimatization period) before starting experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver
| | Sample_extract_protocol_ch1 | tissues of individual rats using Qiagen RNeasy mini kits as
| | Sample_extract_protocol_ch1 | described by the manufacturer. RNA concentrations and purity
| | Sample_extract_protocol_ch1 | were determined spectrophotometrically. RNA quality was
| | Sample_extract_protocol_ch1 | further assessed by capillary electrophoresis using the Agilent
| | Sample_extract_protocol_ch1 | Bioanalyzer. We used 10 íg of total RNA from each individual
| | Sample_extract_protocol_ch1 | animal for microarray analysis
| | Sample_label_ch1 | Affymetrix
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61807/suppl/GSM61807.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61807/suppl/GSM61807.DAT.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61807/suppl/GSM61807.EXP.gz
| | Sample_series_id | GSE2825
| | Sample_data_row_count | 15923
| | |
|
GSM61808 | GPL341 |
|
Seguin_IDR_BrownNorway_Liver_control2
|
Brown Norway Control Liver
|
Characteristics:
Organism: Rattus norvegicus
Strain: Brown Norway
Weight: 150-170 grams
Tissue: liver
Gender: male
Sacrifice Time: 6 hours
|
Control sample #2
|
| Sample_geo_accession | GSM61808
| | Sample_status | Public on Jun 21 2005
| | Sample_submission_date | Jun 18 2005
| | Sample_last_update_date | Jun 24 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 = Rats were given water (vehicle, n | 4) or 1 mL of D-penicillamine
| | Sample_treatment_protocol_ch1 | dissolved in tap water in a single dose of 150 mg/kg by oral
| | Sample_treatment_protocol_ch1 = gavage (n | 8). Animals were sacrificed 6 hours after initial dosing.
| | Sample_growth_protocol_ch1 | Male Brown Norway (BN) rats weighing 150-
| | Sample_growth_protocol_ch1 | 170 g were purchased from Charles River (Montreal, QC). All
| | Sample_growth_protocol_ch1 | animals were housed in plastic cages (two/cage) with wooden
| | Sample_growth_protocol_ch1 | chips as bedding in a 12:12 h light:dark cycle at 22 °C. Rats
| | Sample_growth_protocol_ch1 | were given access to standard rat chow (Agribrands, Purina
| | Sample_growth_protocol_ch1 | Canada, Strathroy, ON) and ad libitum access to tap water for
| | Sample_growth_protocol_ch1 | 1 week (acclimatization period) before starting experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver
| | Sample_extract_protocol_ch1 | tissues of individual rats using Qiagen RNeasy mini kits as
| | Sample_extract_protocol_ch1 | described by the manufacturer. RNA concentrations and purity
| | Sample_extract_protocol_ch1 | were determined spectrophotometrically. RNA quality was
| | Sample_extract_protocol_ch1 | further assessed by capillary electrophoresis using the Agilent
| | Sample_extract_protocol_ch1 | Bioanalyzer. We used 10 micrograms of total RNA from each individual
| | Sample_extract_protocol_ch1 | animal for microarray analysis
| | Sample_label_ch1 | Affymetrix
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61808/suppl/GSM61808.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61808/suppl/GSM61808.DAT.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61808/suppl/GSM61808.EXP.gz
| | Sample_series_id | GSE2825
| | Sample_data_row_count | 15923
| | |
|
GSM61809 | GPL341 |
|
Seguin_IDR_BrownNorway_Liver_control3
|
Brown Norway Control Liver
|
Organism: Rattus norvegicus
Strain: Brown Norway
Weight: 150-170 grams
Tissue: liver
Gender: male
Sacrifice Time: 6 hours
|
Control sample #3
|
| Sample_geo_accession | GSM61809
| | Sample_status | Public on Jun 21 2005
| | Sample_submission_date | Jun 18 2005
| | Sample_last_update_date | Jun 20 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 = Rats were given water (vehicle, n | 4) or 1 mL of D-penicillamine
| | Sample_treatment_protocol_ch1 | dissolved in tap water in a single dose of 150 mg/kg by oral
| | Sample_treatment_protocol_ch1 = gavage (n | 8). Animals were sacrificed 6 hours after initial dosing.
| | Sample_growth_protocol_ch1 | Male Brown Norway (BN) rats weighing 150-
| | Sample_growth_protocol_ch1 | 170 g were purchased from Charles River (Montreal, QC). All
| | Sample_growth_protocol_ch1 | animals were housed in plastic cages (two/cage) with wooden
| | Sample_growth_protocol_ch1 | chips as bedding in a 12:12 h light:dark cycle at 22 °C. Rats
| | Sample_growth_protocol_ch1 | were given access to standard rat chow (Agribrands, Purina
| | Sample_growth_protocol_ch1 | Canada, Strathroy, ON) and ad libitum access to tap water for
| | Sample_growth_protocol_ch1 | 1 week (acclimatization period) before starting experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver
| | Sample_extract_protocol_ch1 | tissues of individual rats using Qiagen RNeasy mini kits as
| | Sample_extract_protocol_ch1 | described by the manufacturer. RNA concentrations and purity
| | Sample_extract_protocol_ch1 | were determined spectrophotometrically. RNA quality was
| | Sample_extract_protocol_ch1 | further assessed by capillary electrophoresis using the Agilent
| | Sample_extract_protocol_ch1 | Bioanalyzer. We used 10 micrograms of total RNA from each individual
| | Sample_extract_protocol_ch1 | animal for microarray analysis.
| | Sample_label_ch1 | Affymetrix
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61809/suppl/GSM61809.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61809/suppl/GSM61809.DAT.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61809/suppl/GSM61809.EXP.gz
| | Sample_series_id | GSE2825
| | Sample_data_row_count | 15923
| | |
|
GSM61810 | GPL341 |
|
Seguin_IDR_BrownNorway_Liver_control4
|
Brown Norway Control Liver
|
Organism: Rattus norvegicus
Strain: Brown Norway
Weight: 150-170 grams
Tissue: liver
Gender: male
Sacrifice Time: 6 hours
|
Control sample #4
|
| Sample_geo_accession | GSM61810
| | Sample_status | Public on Jun 21 2005
| | Sample_submission_date | Jun 18 2005
| | Sample_last_update_date | Jun 20 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 = Rats were given water (vehicle, n | 4) or 1 mL of D-penicillamine
| | Sample_treatment_protocol_ch1 | dissolved in tap water in a single dose of 150 mg/kg by oral
| | Sample_treatment_protocol_ch1 = gavage (n | 8). Animals were sacrificed 6 hours after initial dosing.
| | Sample_growth_protocol_ch1 | Male Brown Norway (BN) rats weighing 150-
| | Sample_growth_protocol_ch1 | 170 g were purchased from Charles River (Montreal, QC). All
| | Sample_growth_protocol_ch1 | animals were housed in plastic cages (two/cage) with wooden
| | Sample_growth_protocol_ch1 | chips as bedding in a 12:12 h light:dark cycle at 22 °C. Rats
| | Sample_growth_protocol_ch1 | were given access to standard rat chow (Agribrands, Purina
| | Sample_growth_protocol_ch1 | Canada, Strathroy, ON) and ad libitum access to tap water for
| | Sample_growth_protocol_ch1 | 1 week (acclimatization period) before starting experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver
| | Sample_extract_protocol_ch1 | tissues of individual rats using Qiagen RNeasy mini kits as
| | Sample_extract_protocol_ch1 | described by the manufacturer. RNA concentrations and purity
| | Sample_extract_protocol_ch1 | were determined spectrophotometrically. RNA quality was
| | Sample_extract_protocol_ch1 | further assessed by capillary electrophoresis using the Agilent
| | Sample_extract_protocol_ch1 | Bioanalyzer. We used 10 micrograms of total RNA from each individual
| | Sample_extract_protocol_ch1 | animal for microarray analysis.
| | Sample_label_ch1 | Affymetrix
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61810/suppl/GSM61810.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61810/suppl/GSM61810.DAT.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61810/suppl/GSM61810.EXP.gz
| | Sample_series_id | GSE2825
| | Sample_data_row_count | 15923
| | |
|
GSM61811 | GPL341 |
|
Seguin_IDR_BrownNorway_Liver_treated1
|
Brown Norway DPA-Treated Liver
|
Organism: Rattus norvegicus
Strain: Brown Norway
Weight: 150-170 grams
Tissue: liver
Gender: male
Sacrifice Time: 6 hours
Treatment: D-penicillamine 150 mg/kg by oral gavage
|
D-PA sample #1
|
| Sample_geo_accession | GSM61811
| | Sample_status | Public on Jun 21 2005
| | Sample_submission_date | Jun 18 2005
| | Sample_last_update_date | Jun 20 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 = Rats were given water (vehicle, n | 4) or 1 mL of D-penicillamine
| | Sample_treatment_protocol_ch1 | dissolved in tap water in a single dose of 150 mg/kg by oral
| | Sample_treatment_protocol_ch1 = gavage (n | 8). Animals were sacrificed 6 hours after initial dosing.
| | Sample_growth_protocol_ch1 | Male Brown Norway (BN) rats weighing 150-
| | Sample_growth_protocol_ch1 | 170 g were purchased from Charles River (Montreal, QC). All
| | Sample_growth_protocol_ch1 | animals were housed in plastic cages (two/cage) with wooden
| | Sample_growth_protocol_ch1 | chips as bedding in a 12:12 h light:dark cycle at 22 °C. Rats
| | Sample_growth_protocol_ch1 | were given access to standard rat chow (Agribrands, Purina
| | Sample_growth_protocol_ch1 | Canada, Strathroy, ON) and ad libitum access to tap water for
| | Sample_growth_protocol_ch1 | 1 week (acclimatization period) before starting experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver
| | Sample_extract_protocol_ch1 | tissues of individual rats using Qiagen RNeasy mini kits as
| | Sample_extract_protocol_ch1 | described by the manufacturer. RNA concentrations and purity
| | Sample_extract_protocol_ch1 | were determined spectrophotometrically. RNA quality was
| | Sample_extract_protocol_ch1 | further assessed by capillary electrophoresis using the Agilent
| | Sample_extract_protocol_ch1 | Bioanalyzer. We used 10 micrograms of total RNA from each individual
| | Sample_extract_protocol_ch1 | animal for microarray analysis.
| | Sample_label_ch1 | Affymetrix
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61811/suppl/GSM61811.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61811/suppl/GSM61811.DAT.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61811/suppl/GSM61811.EXP.gz
| | Sample_series_id | GSE2825
| | Sample_data_row_count | 15923
| | |
|
GSM61812 | GPL341 |
|
Seguin_IDR_BrownNorway_Liver_treated2
|
Brown Norway DPA-Treated Liver
|
Organism: Rattus norvegicus
Strain: Brown Norway
Weight: 150-170 grams
Tissue: liver
Gender: male
Sacrifice Time: 6 hours
Treatment: D-penicillamine 150 mg/kg by oral gavage
|
D-PA sample #2
|
| Sample_geo_accession | GSM61812
| | Sample_status | Public on Jun 21 2005
| | Sample_submission_date | Jun 18 2005
| | Sample_last_update_date | Jun 20 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 = Rats were given water (vehicle, n | 4) or 1 mL of D-penicillamine
| | Sample_treatment_protocol_ch1 | dissolved in tap water in a single dose of 150 mg/kg by oral
| | Sample_treatment_protocol_ch1 = gavage (n | 8). Animals were sacrificed 6 hours after initial dosing.
| | Sample_growth_protocol_ch1 | Male Brown Norway (BN) rats weighing 150-
| | Sample_growth_protocol_ch1 | 170 g were purchased from Charles River (Montreal, QC). All
| | Sample_growth_protocol_ch1 | animals were housed in plastic cages (two/cage) with wooden
| | Sample_growth_protocol_ch1 | chips as bedding in a 12:12 h light:dark cycle at 22 °C. Rats
| | Sample_growth_protocol_ch1 | were given access to standard rat chow (Agribrands, Purina
| | Sample_growth_protocol_ch1 | Canada, Strathroy, ON) and ad libitum access to tap water for
| | Sample_growth_protocol_ch1 | 1 week (acclimatization period) before starting experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver
| | Sample_extract_protocol_ch1 | tissues of individual rats using Qiagen RNeasy mini kits as
| | Sample_extract_protocol_ch1 | described by the manufacturer. RNA concentrations and purity
| | Sample_extract_protocol_ch1 | were determined spectrophotometrically. RNA quality was
| | Sample_extract_protocol_ch1 | further assessed by capillary electrophoresis using the Agilent
| | Sample_extract_protocol_ch1 | Bioanalyzer. We used 10 micrograms of total RNA from each individual
| | Sample_extract_protocol_ch1 | animal for microarray analysis.
| | Sample_label_ch1 | Affymetrix
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61812/suppl/GSM61812.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61812/suppl/GSM61812.DAT.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61812/suppl/GSM61812.EXP.gz
| | Sample_series_id | GSE2825
| | Sample_data_row_count | 15923
| | |
|
GSM61813 | GPL341 |
|
Seguin_IDR_BrownNorway_Liver_treated3
|
Brown Norway DPA-Treated Liver
|
Organism: Rattus norvegicus
Strain: Brown Norway
Weight: 150-170 grams
Tissue: liver
Gender: male
Sacrifice Time: 6 hours
Treatment: D-penicillamine 150 mg/kg by oral gavage
|
D-PA sample #3
|
| Sample_geo_accession | GSM61813
| | Sample_status | Public on Jun 21 2005
| | Sample_submission_date | Jun 18 2005
| | Sample_last_update_date | Jun 20 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 = Rats were given water (vehicle, n = 4) or 1 mL of D-penicillamine dissolved in tap water in a single dose of 150 mg/kg by oral gavage (n | 8). Animals were sacrificed 6 hours after initial dosing.
| | Sample_growth_protocol_ch1 | Male Brown Norway (BN) rats weighing 150-170 g were purchased from Charles River (Montreal, QC). All animals were housed in plastic cages (two/cage) with wooden chips as bedding in a 12:12 h light:dark cycle at 22 °C. Rats were given access to standard rat chow (Agribrands, Purina Canada, Strathroy, ON) and ad libitum access to tap water for 1 week (acclimatization period) before starting experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues of individual rats using Qiagen RNeasy mini kits as described by the manufacturer. RNA concentrations and purity were determined spectrophotometrically. RNA quality was further assessed by capillary electrophoresis using the Agilent Bioanalyzer. We used 10 micrograms of total RNA from each individual animal for microarray analysis.
| | Sample_label_ch1 | Affymetrix
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61813/suppl/GSM61813.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61813/suppl/GSM61813.DAT.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61813/suppl/GSM61813.EXP.gz
| | Sample_series_id | GSE2825
| | Sample_data_row_count | 15923
| | |
|
GSM61814 | GPL341 |
|
Seguin_IDR_BrownNorway_Liver_treated4
|
Brown Norway DPA-Treated Liver
|
Organism: Rattus norvegicus
Strain: Brown Norway
Weight: 150-170 grams
Tissue: liver
Gender: male
Sacrifice Time: 6 hours
Treatment: D-penicillamine 150 mg/kg by oral gavage
|
D-PA sample #4
|
| Sample_geo_accession | GSM61814
| | Sample_status | Public on Jun 21 2005
| | Sample_submission_date | Jun 18 2005
| | Sample_last_update_date | Jun 20 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 = Rats were given water (vehicle, n = 4) or 1 mL of D-penicillamine dissolved in tap water in a single dose of 150 mg/kg by oral gavage (n | 8). Animals were sacrificed 6 hours after initial dosing.
| | Sample_growth_protocol_ch1 | Male Brown Norway (BN) rats weighing 150-170 g were purchased from Charles River (Montreal, QC). All animals were housed in plastic cages (two/cage) with wooden chips as bedding in a 12:12 h light:dark cycle at 22 °C. Rats were given access to standard rat chow (Agribrands, Purina Canada, Strathroy, ON) and ad libitum access to tap water for 1 week (acclimatization period) before starting experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues of individual rats using Qiagen RNeasy mini kits as described by the manufacturer. RNA concentrations and purity were determined spectrophotometrically. RNA quality was further assessed by capillary electrophoresis using the Agilent Bioanalyzer. We used 10 micrograms of total RNA from each individual animal for microarray analysis.
| | Sample_label_ch1 | Affymetrix
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61814/suppl/GSM61814.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61814/suppl/GSM61814.DAT.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61814/suppl/GSM61814.EXP.gz
| | Sample_series_id | GSE2825
| | Sample_data_row_count | 15923
| | |
|
GSM61815 | GPL341 |
|
Seguin_IDR_BrownNorway_Liver_treated5
|
Brown Norway DPA-Treated Liver
|
Organism: Rattus norvegicus
Strain: Brown Norway
Weight: 150-170 grams
Tissue: liver
Gender: male
Sacrifice Time: 6 hours
Treatment: D-penicillamine 150 mg/kg by oral gavage
|
D-PA sample #5
|
| Sample_geo_accession | GSM61815
| | Sample_status | Public on Jun 21 2005
| | Sample_submission_date | Jun 18 2005
| | Sample_last_update_date | Jun 20 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 = Rats were given water (vehicle, n = 4) or 1 mL of D-penicillamine dissolved in tap water in a single dose of 150 mg/kg by oral gavage (n | 8). Animals were sacrificed 6 hours after initial dosing.
| | Sample_growth_protocol_ch1 | Male Brown Norway (BN) rats weighing 150-170 g were purchased from Charles River (Montreal, QC). All animals were housed in plastic cages (two/cage) with wooden chips as bedding in a 12:12 h light:dark cycle at 22 °C. Rats were given access to standard rat chow (Agribrands, Purina Canada, Strathroy, ON) and ad libitum access to tap water for 1 week (acclimatization period) before starting experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues of individual rats using Qiagen RNeasy mini kits as described by the manufacturer. RNA concentrations and purity were determined spectrophotometrically. RNA quality was further assessed by capillary electrophoresis using the Agilent Bioanalyzer. We used 10 micrograms of total RNA from each individual animal for microarray analysis.
| | Sample_label_ch1 | Affymetrix
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61815/suppl/GSM61815.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61815/suppl/GSM61815.DAT.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61815/suppl/GSM61815.EXP.gz
| | Sample_series_id | GSE2825
| | Sample_data_row_count | 15923
| | |
|
GSM61816 | GPL341 |
|
Seguin_IDR_BrownNorway_Liver_treated6
|
Brown Norway DPA-Treated Liver
|
Organism: Rattus norvegicus
Strain: Brown Norway
Weight: 150-170 grams
Tissue: liver
Gender: male
Sacrifice Time: 6 hours
Treatment: D-penicillamine 150 mg/kg by oral gavage
|
D-PA sample #6
|
| Sample_geo_accession | GSM61816
| | Sample_status | Public on Jun 21 2005
| | Sample_submission_date | Jun 18 2005
| | Sample_last_update_date | Jun 20 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 = Rats were given water (vehicle, n = 4) or 1 mL of D-penicillamine dissolved in tap water in a single dose of 150 mg/kg by oral gavage (n | 8). Animals were sacrificed 6 hours after initial dosing.
| | Sample_growth_protocol_ch1 | Male Brown Norway (BN) rats weighing 150-170 g were purchased from Charles River (Montreal, QC). All animals were housed in plastic cages (two/cage) with wooden chips as bedding in a 12:12 h light:dark cycle at 22 °C. Rats were given access to standard rat chow (Agribrands, Purina Canada, Strathroy, ON) and ad libitum access to tap water for 1 week (acclimatization period) before starting experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues of individual rats using Qiagen RNeasy mini kits as described by the manufacturer. RNA concentrations and purity were determined spectrophotometrically. RNA quality was further assessed by capillary electrophoresis using the Agilent Bioanalyzer. We used 10 micrograms of total RNA from each individual animal for microarray analysis.
| | Sample_label_ch1 | Affymetrix
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61816/suppl/GSM61816.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61816/suppl/GSM61816.DAT.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61816/suppl/GSM61816.EXP.gz
| | Sample_series_id | GSE2825
| | Sample_data_row_count | 15923
| | |
|
GSM61817 | GPL341 |
|
Seguin_IDR_BrownNorway_Liver_treated7
|
Brown Norway DPA-Treated Liver
|
Organism: Rattus norvegicus
Strain: Brown Norway
Weight: 150-170 grams
Tissue: liver
Gender: male
Sacrifice Time: 6 hours
Treatment: D-penicillamine 150 mg/kg by oral gavage
|
D-PA sample #7
|
| Sample_geo_accession | GSM61817
| | Sample_status | Public on Jun 21 2005
| | Sample_submission_date | Jun 18 2005
| | Sample_last_update_date | Jun 20 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 = Rats were given water (vehicle, n = 4) or 1 mL of D-penicillamine dissolved in tap water in a single dose of 150 mg/kg by oral gavage (n | 8). Animals were sacrificed 6 hours after initial dosing.
| | Sample_growth_protocol_ch1 | Male Brown Norway (BN) rats weighing 150-170 g were purchased from Charles River (Montreal, QC). All animals were housed in plastic cages (two/cage) with wooden chips as bedding in a 12:12 h light:dark cycle at 22 °C. Rats were given access to standard rat chow (Agribrands, Purina Canada, Strathroy, ON) and ad libitum access to tap water for 1 week (acclimatization period) before starting experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues of individual rats using Qiagen RNeasy mini kits as described by the manufacturer. RNA concentrations and purity were determined spectrophotometrically. RNA quality was further assessed by capillary electrophoresis using the Agilent Bioanalyzer. We used 10 micrograms of total RNA from each individual animal for microarray analysis.
| | Sample_label_ch1 | Affymetrix
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61817/suppl/GSM61817.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61817/suppl/GSM61817.DAT.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61817/suppl/GSM61817.EXP.gz
| | Sample_series_id | GSE2825
| | Sample_data_row_count | 15923
| | |
|
GSM61818 | GPL341 |
|
Seguin_IDR_BrownNorway_Liver_treated8
|
Brown Norway DPA-Treated Liver
|
Organism: Rattus norvegicus
Strain: Brown Norway
Weight: 150-170 grams
Tissue: liver
Gender: male
Sacrifice Time: 6 hours
Treatment: D-penicillamine 150 mg/kg by oral gavage
|
D-PA sample #8
|
| Sample_geo_accession | GSM61818
| | Sample_status | Public on Jun 21 2005
| | Sample_submission_date | Jun 18 2005
| | Sample_last_update_date | Jun 20 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 = Rats were given water (vehicle, n = 4) or 1 mL of D-penicillamine dissolved in tap water in a single dose of 150 mg/kg by oral gavage (n | 8). Animals were sacrificed 6 hours after initial dosing.
| | Sample_growth_protocol_ch1 | Male Brown Norway (BN) rats weighing 150-170 g were purchased from Charles River (Montreal, QC). All animals were housed in plastic cages (two/cage) with wooden chips as bedding in a 12:12 h light:dark cycle at 22 °C. Rats were given access to standard rat chow (Agribrands, Purina Canada, Strathroy, ON) and ad libitum access to tap water for 1 week (acclimatization period) before starting experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues of individual rats using Qiagen RNeasy mini kits as described by the manufacturer. RNA concentrations and purity were determined spectrophotometrically. RNA quality was further assessed by capillary electrophoresis using the Agilent Bioanalyzer. We used 10 micrograms of total RNA from each individual animal for microarray analysis.
| | Sample_label_ch1 | Affymetrix
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61818/suppl/GSM61818.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61818/suppl/GSM61818.DAT.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM61nnn/GSM61818/suppl/GSM61818.EXP.gz
| | Sample_series_id | GSE2825
| | Sample_data_row_count | 15923
| | |
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