Search results for the GEO ID: GSE28305  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM700327 | GPL570 |
|
vehicle, biological rep1
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MDA-MB-453 cells treated with vehicle
|
agent: vehicle
cell line: MDA-MB-453
disease state: breast cancer
|
Gene expression data from vehicle treated MDA-MB-453 cells
|
| Sample_geo_accession | GSM700327
| | Sample_status | Public on Jul 11 2011
| | Sample_submission_date | Apr 01 2011
| | Sample_last_update_date | Jul 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The MDA-MB-453 cells were grown in the phenol red-free medium supplemented with 5% charcoal/dextran-treated fetal bovine serum for 3 days, followed by treatment of vehicle or 10 nM DHT for time course.
| | Sample_growth_protocol_ch1 | The MDA-MB-453 cells were maintained in DMEM supplemented with 10% fetal bovinw serum at 37oC incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Raw gene expression values were obtained using Affymetrix GeneChip software and further analyzed using the Robust Multichip Average (RMA) algorithm and the MultiExperiment Viewer (MeV) software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yiwen,,Chen
| | Sample_contact_email | ywchen@jimmy.harvard.edu
| | Sample_contact_phone | 617-582-7768
| | Sample_contact_laboratory | Xiaole Shirley Liu
| | Sample_contact_department | Biostatistics and Computational Biology
| | Sample_contact_institute | Dana Farber Cancer Institute and Harvard School of Public Health
| | Sample_contact_address | 44 Binney Street, CLSB 11007
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700327/suppl/GSM700327_M453_Veh_1.CEL.gz
| | Sample_series_id | GSE28305
| | Sample_series_id | GSE28789
| | Sample_data_row_count | 54675
| | |
|
GSM700328 | GPL570 |
|
vehicle, biological rep2
|
MDA-MB-453 cells treated with vehicle
|
agent: vehicle
cell line: MDA-MB-453
disease state: breast cancer
|
Gene expression data from vehicle treated MDA-MB-453 cells
|
| Sample_geo_accession | GSM700328
| | Sample_status | Public on Jul 11 2011
| | Sample_submission_date | Apr 01 2011
| | Sample_last_update_date | Jul 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The MDA-MB-453 cells were grown in the phenol red-free medium supplemented with 5% charcoal/dextran-treated fetal bovine serum for 3 days, followed by treatment of vehicle or 10 nM DHT for time course.
| | Sample_growth_protocol_ch1 | The MDA-MB-453 cells were maintained in DMEM supplemented with 10% fetal bovinw serum at 37oC incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Raw gene expression values were obtained using Affymetrix GeneChip software and further analyzed using the Robust Multichip Average (RMA) algorithm and the MultiExperiment Viewer (MeV) software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yiwen,,Chen
| | Sample_contact_email | ywchen@jimmy.harvard.edu
| | Sample_contact_phone | 617-582-7768
| | Sample_contact_laboratory | Xiaole Shirley Liu
| | Sample_contact_department | Biostatistics and Computational Biology
| | Sample_contact_institute | Dana Farber Cancer Institute and Harvard School of Public Health
| | Sample_contact_address | 44 Binney Street, CLSB 11007
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700328/suppl/GSM700328_M453_Veh_2.CEL.gz
| | Sample_series_id | GSE28305
| | Sample_series_id | GSE28789
| | Sample_data_row_count | 54675
| | |
|
GSM700329 | GPL570 |
|
DHT for 4h, biological rep1
|
MDA-MB-453 cells treated with 10nM DHT for 4h
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agent: 5a-dihydrotestosterone
time point: 4h
cell line: MDA-MB-453
disease state: breast cancer
|
Gene expression data from 4h DHT treated MDA-MB-453 cells
|
| Sample_geo_accession | GSM700329
| | Sample_status | Public on Jul 11 2011
| | Sample_submission_date | Apr 01 2011
| | Sample_last_update_date | Jul 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The MDA-MB-453 cells were grown in the phenol red-free medium supplemented with 5% charcoal/dextran-treated fetal bovine serum for 3 days, followed by treatment of vehicle or 10 nM DHT for time course.
| | Sample_growth_protocol_ch1 | The MDA-MB-453 cells were maintained in DMEM supplemented with 10% fetal bovinw serum at 37oC incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Raw gene expression values were obtained using Affymetrix GeneChip software and further analyzed using the Robust Multichip Average (RMA) algorithm and the MultiExperiment Viewer (MeV) software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yiwen,,Chen
| | Sample_contact_email | ywchen@jimmy.harvard.edu
| | Sample_contact_phone | 617-582-7768
| | Sample_contact_laboratory | Xiaole Shirley Liu
| | Sample_contact_department | Biostatistics and Computational Biology
| | Sample_contact_institute | Dana Farber Cancer Institute and Harvard School of Public Health
| | Sample_contact_address | 44 Binney Street, CLSB 11007
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700329/suppl/GSM700329_M453_DHT_4h_1.CEL.gz
| | Sample_series_id | GSE28305
| | Sample_series_id | GSE28789
| | Sample_data_row_count | 54675
| | |
|
GSM700330 | GPL570 |
|
DHT for 4h, biological rep2
|
MDA-MB-453 cells treated with 10nM DHT for 4h
|
agent: 5a-dihydrotestosterone
time point: 4h
cell line: MDA-MB-453
disease state: breast cancer
|
Gene expression data from 4h DHT treated MDA-MB-453 cells
|
| Sample_geo_accession | GSM700330
| | Sample_status | Public on Jul 11 2011
| | Sample_submission_date | Apr 01 2011
| | Sample_last_update_date | Jul 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The MDA-MB-453 cells were grown in the phenol red-free medium supplemented with 5% charcoal/dextran-treated fetal bovine serum for 3 days, followed by treatment of vehicle or 10 nM DHT for time course.
| | Sample_growth_protocol_ch1 | The MDA-MB-453 cells were maintained in DMEM supplemented with 10% fetal bovinw serum at 37oC incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Raw gene expression values were obtained using Affymetrix GeneChip software and further analyzed using the Robust Multichip Average (RMA) algorithm and the MultiExperiment Viewer (MeV) software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yiwen,,Chen
| | Sample_contact_email | ywchen@jimmy.harvard.edu
| | Sample_contact_phone | 617-582-7768
| | Sample_contact_laboratory | Xiaole Shirley Liu
| | Sample_contact_department | Biostatistics and Computational Biology
| | Sample_contact_institute | Dana Farber Cancer Institute and Harvard School of Public Health
| | Sample_contact_address | 44 Binney Street, CLSB 11007
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700330/suppl/GSM700330_M453_DHT_4h_2.CEL.gz
| | Sample_series_id | GSE28305
| | Sample_series_id | GSE28789
| | Sample_data_row_count | 54675
| | |
|
GSM700331 | GPL570 |
|
DHT for 16h, biological rep1
|
MDA-MB-453 cells treated with 10nM DHT for 16h
|
agent: 5a-dihydrotestosterone
time point: 16h
cell line: MDA-MB-453
disease state: breast cancer
|
Gene expression data from 16h DHT treated MDA-MB-453 cells
|
| Sample_geo_accession | GSM700331
| | Sample_status | Public on Jul 11 2011
| | Sample_submission_date | Apr 01 2011
| | Sample_last_update_date | Jul 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The MDA-MB-453 cells were grown in the phenol red-free medium supplemented with 5% charcoal/dextran-treated fetal bovine serum for 3 days, followed by treatment of vehicle or 10 nM DHT for time course.
| | Sample_growth_protocol_ch1 | The MDA-MB-453 cells were maintained in DMEM supplemented with 10% fetal bovinw serum at 37oC incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Raw gene expression values were obtained using Affymetrix GeneChip software and further analyzed using the Robust Multichip Average (RMA) algorithm and the MultiExperiment Viewer (MeV) software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yiwen,,Chen
| | Sample_contact_email | ywchen@jimmy.harvard.edu
| | Sample_contact_phone | 617-582-7768
| | Sample_contact_laboratory | Xiaole Shirley Liu
| | Sample_contact_department | Biostatistics and Computational Biology
| | Sample_contact_institute | Dana Farber Cancer Institute and Harvard School of Public Health
| | Sample_contact_address | 44 Binney Street, CLSB 11007
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700331/suppl/GSM700331_M453_DHT_16h_1.CEL.gz
| | Sample_series_id | GSE28305
| | Sample_series_id | GSE28789
| | Sample_data_row_count | 54675
| | |
|
GSM700332 | GPL570 |
|
DHT for 16h, biological rep2
|
MDA-MB-453 cells treated with 10nM DHT for 16h
|
agent: 5a-dihydrotestosterone
time point: 16h
cell line: MDA-MB-453
disease state: breast cancer
|
Gene expression data from 16h DHT treated MDA-MB-453 cells
|
| Sample_geo_accession | GSM700332
| | Sample_status | Public on Jul 11 2011
| | Sample_submission_date | Apr 01 2011
| | Sample_last_update_date | Jul 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The MDA-MB-453 cells were grown in the phenol red-free medium supplemented with 5% charcoal/dextran-treated fetal bovine serum for 3 days, followed by treatment of vehicle or 10 nM DHT for time course.
| | Sample_growth_protocol_ch1 | The MDA-MB-453 cells were maintained in DMEM supplemented with 10% fetal bovinw serum at 37oC incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Raw gene expression values were obtained using Affymetrix GeneChip software and further analyzed using the Robust Multichip Average (RMA) algorithm and the MultiExperiment Viewer (MeV) software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yiwen,,Chen
| | Sample_contact_email | ywchen@jimmy.harvard.edu
| | Sample_contact_phone | 617-582-7768
| | Sample_contact_laboratory | Xiaole Shirley Liu
| | Sample_contact_department | Biostatistics and Computational Biology
| | Sample_contact_institute | Dana Farber Cancer Institute and Harvard School of Public Health
| | Sample_contact_address | 44 Binney Street, CLSB 11007
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700332/suppl/GSM700332_M453_DHT_16h_2.CEL.gz
| | Sample_series_id | GSE28305
| | Sample_series_id | GSE28789
| | Sample_data_row_count | 54675
| | |
|
GSM700333 | GPL570 |
|
DHT for 48h, biological rep1
|
MDA-MB-453 cells treated with 10nM DHT for 48h
|
agent: 5a-dihydrotestosterone
time point: 48h
cell line: MDA-MB-453
disease state: breast cancer
|
Gene expression data from 48h DHT treated MDA-MB-453 cells
|
| Sample_geo_accession | GSM700333
| | Sample_status | Public on Jul 11 2011
| | Sample_submission_date | Apr 01 2011
| | Sample_last_update_date | Jul 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The MDA-MB-453 cells were grown in the phenol red-free medium supplemented with 5% charcoal/dextran-treated fetal bovine serum for 3 days, followed by treatment of vehicle or 10 nM DHT for time course.
| | Sample_growth_protocol_ch1 | The MDA-MB-453 cells were maintained in DMEM supplemented with 10% fetal bovinw serum at 37oC incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Raw gene expression values were obtained using Affymetrix GeneChip software and further analyzed using the Robust Multichip Average (RMA) algorithm and the MultiExperiment Viewer (MeV) software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yiwen,,Chen
| | Sample_contact_email | ywchen@jimmy.harvard.edu
| | Sample_contact_phone | 617-582-7768
| | Sample_contact_laboratory | Xiaole Shirley Liu
| | Sample_contact_department | Biostatistics and Computational Biology
| | Sample_contact_institute | Dana Farber Cancer Institute and Harvard School of Public Health
| | Sample_contact_address | 44 Binney Street, CLSB 11007
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700333/suppl/GSM700333_M453_DHT_48h_1.CEL.gz
| | Sample_series_id | GSE28305
| | Sample_series_id | GSE28789
| | Sample_data_row_count | 54675
| | |
|
GSM700334 | GPL570 |
|
DHT for 48h, biological rep2
|
MDA-MB-453 cells treated with 10nM DHT for 48h
|
agent: 5a-dihydrotestosterone
time point: 48h
cell line: MDA-MB-453
disease state: breast cancer
|
Gene expression data from 48h DHT treated MDA-MB-453 cells
|
| Sample_geo_accession | GSM700334
| | Sample_status | Public on Jul 11 2011
| | Sample_submission_date | Apr 01 2011
| | Sample_last_update_date | Jul 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The MDA-MB-453 cells were grown in the phenol red-free medium supplemented with 5% charcoal/dextran-treated fetal bovine serum for 3 days, followed by treatment of vehicle or 10 nM DHT for time course.
| | Sample_growth_protocol_ch1 | The MDA-MB-453 cells were maintained in DMEM supplemented with 10% fetal bovinw serum at 37oC incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Raw gene expression values were obtained using Affymetrix GeneChip software and further analyzed using the Robust Multichip Average (RMA) algorithm and the MultiExperiment Viewer (MeV) software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yiwen,,Chen
| | Sample_contact_email | ywchen@jimmy.harvard.edu
| | Sample_contact_phone | 617-582-7768
| | Sample_contact_laboratory | Xiaole Shirley Liu
| | Sample_contact_department | Biostatistics and Computational Biology
| | Sample_contact_institute | Dana Farber Cancer Institute and Harvard School of Public Health
| | Sample_contact_address | 44 Binney Street, CLSB 11007
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700334/suppl/GSM700334_M453_DHT_48h_2.CEL.gz
| | Sample_series_id | GSE28305
| | Sample_series_id | GSE28789
| | Sample_data_row_count | 54675
| | |
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