Result

Search results for the GEO ID: GSE28317

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GSM ID

GPL ID

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Title

Source name

Description

Characteristics

GSM700450

GPL570

AML1-ETO CD34+ cells rep1

CD34+ cells infected with MIGR1-AML1-ETO

cell type: CD34+ cord blood cells infection: MIGR1-AML1-ETO

Sample_geo_accession	GSM700450
Sample_status	Public on Jul 19 2011
Sample_submission_date	Apr 01 2011
Sample_last_update_date	Jul 19 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Human CD34+ cord blood cells were infected with retrovirus expressing MIGR1, AML1-ETO and AML1-ETO∆NHR1. CD34+GFP+ cells were isolated by FACS.
Sample_growth_protocol_ch1	20% BIT IMEM media with human SCF, TPO, Flt3L and IL6, 37 degree 5% CO2 incubator
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA extraction plus kit was used to isolate RNA.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	200 ng total RNA converted to cRNA using Affymetrix GeneChip®3' IVT Kit and in vitro transcription resulting into biotin-labeled cRNA, fragmented prior to hybridization (Affymetrix Expression Analysis Technical Manual, as described).
Sample_hyb_protocol	10 ug of cDNA was hybridized for 16 hr to the Affymetrix array as described in the Expression Analysis Technical Manual. GeneChips were washed and stained in the Affymetrix Fluidics Station FS450.
Sample_scan_protocol	Affymetrix GeneArray scanner 7G
Sample_data_processing	Feature intensity was extracted by Affymetrix GeneChip Command Console as CEL files. Chp fies are generated with Affymetrix expression console using MAS5.0.
Sample_platform_id	GPL570
Sample_contact_name	Jeffrey,,Zhao
Sample_contact_email	zhaoy@mskcc.org
Sample_contact_department	Genomics Core
Sample_contact_institute	Memorial Sloan Kettering Cancer Center
Sample_contact_address	1275 York Avenue
Sample_contact_city	New York
Sample_contact_state	RRL417A
Sample_contact_zip/postal_code	10065
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700450/suppl/GSM700450_LW1_AML1-ETO-1_HG-U133_Plus_2.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700450/suppl/GSM700450_LW1_AML1-ETO-1_HG-U133_Plus_2.mas5.CHP.gz
Sample_series_id	GSE28317
Sample_data_row_count	54675

GSM700451

GPL570

AML1-ETO CD34+ cells rep2

CD34+ cells infected with MIGR1-AML1-ETO

cell type: CD34+ cord blood cells infection: MIGR1-AML1-ETO

Sample_geo_accession	GSM700451
Sample_status	Public on Jul 19 2011
Sample_submission_date	Apr 01 2011
Sample_last_update_date	Jul 19 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Human CD34+ cord blood cells were infected with retrovirus expressing MIGR1, AML1-ETO and AML1-ETO∆NHR1. CD34+GFP+ cells were isolated by FACS.
Sample_growth_protocol_ch1	20% BIT IMEM media with human SCF, TPO, Flt3L and IL6, 37 degree 5% CO2 incubator
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA extraction plus kit was used to isolate RNA.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	200 ng total RNA converted to cRNA using Affymetrix GeneChip®3' IVT Kit and in vitro transcription resulting into biotin-labeled cRNA, fragmented prior to hybridization (Affymetrix Expression Analysis Technical Manual, as described).
Sample_hyb_protocol	10 ug of cDNA was hybridized for 16 hr to the Affymetrix array as described in the Expression Analysis Technical Manual. GeneChips were washed and stained in the Affymetrix Fluidics Station FS450.
Sample_scan_protocol	Affymetrix GeneArray scanner 7G
Sample_data_processing	Feature intensity was extracted by Affymetrix GeneChip Command Console as CEL files. Chp fies are generated with Affymetrix expression console using MAS5.0.
Sample_platform_id	GPL570
Sample_contact_name	Jeffrey,,Zhao
Sample_contact_email	zhaoy@mskcc.org
Sample_contact_department	Genomics Core
Sample_contact_institute	Memorial Sloan Kettering Cancer Center
Sample_contact_address	1275 York Avenue
Sample_contact_city	New York
Sample_contact_state	RRL417A
Sample_contact_zip/postal_code	10065
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700451/suppl/GSM700451_LW2_AML1-ETO-2_HG-U133_Plus_2.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700451/suppl/GSM700451_LW2_AML1-ETO-2_HG-U133_Plus_2.mas5.CHP.gz
Sample_series_id	GSE28317
Sample_data_row_count	54675

GSM700452

GPL570

AML1-ETO CD34+ cells rep3

CD34+ cells infected with MIGR1-AML1-ETO

cell type: CD34+ cord blood cells infection: MIGR1-AML1-ETO

Sample_geo_accession	GSM700452
Sample_status	Public on Jul 19 2011
Sample_submission_date	Apr 01 2011
Sample_last_update_date	Jul 19 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Human CD34+ cord blood cells were infected with retrovirus expressing MIGR1, AML1-ETO and AML1-ETO∆NHR1. CD34+GFP+ cells were isolated by FACS.
Sample_growth_protocol_ch1	20% BIT IMEM media with human SCF, TPO, Flt3L and IL6, 37 degree 5% CO2 incubator
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA extraction plus kit was used to isolate RNA.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	200 ng total RNA converted to cRNA using Affymetrix GeneChip®3' IVT Kit and in vitro transcription resulting into biotin-labeled cRNA, fragmented prior to hybridization (Affymetrix Expression Analysis Technical Manual, as described).
Sample_hyb_protocol	10 ug of cDNA was hybridized for 16 hr to the Affymetrix array as described in the Expression Analysis Technical Manual. GeneChips were washed and stained in the Affymetrix Fluidics Station FS450.
Sample_scan_protocol	Affymetrix GeneArray scanner 7G
Sample_data_processing	Feature intensity was extracted by Affymetrix GeneChip Command Console as CEL files. Chp fies are generated with Affymetrix expression console using MAS5.0.
Sample_platform_id	GPL570
Sample_contact_name	Jeffrey,,Zhao
Sample_contact_email	zhaoy@mskcc.org
Sample_contact_department	Genomics Core
Sample_contact_institute	Memorial Sloan Kettering Cancer Center
Sample_contact_address	1275 York Avenue
Sample_contact_city	New York
Sample_contact_state	RRL417A
Sample_contact_zip/postal_code	10065
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700452/suppl/GSM700452_LW3_AML1-ETO-3_HG-U133_Plus_2.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700452/suppl/GSM700452_LW3_AML1-ETO-3_HG-U133_Plus_2.mas5.CHP.gz
Sample_series_id	GSE28317
Sample_data_row_count	54675

GSM700453

GPL570

AML1-ETO∆NHR1 CD34+ cells rep1

CD34+ cells infected with MIGR1-AML1-ETO∆NHR1

cell type: CD34+ cord blood cells infection: MIGR1-AML1-ETO∆NHR1

Sample_geo_accession	GSM700453
Sample_status	Public on Jul 19 2011
Sample_submission_date	Apr 01 2011
Sample_last_update_date	Jul 19 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Human CD34+ cord blood cells were infected with retrovirus expressing MIGR1, AML1-ETO and AML1-ETO∆NHR1. CD34+GFP+ cells were isolated by FACS.
Sample_growth_protocol_ch1	20% BIT IMEM media with human SCF, TPO, Flt3L and IL6, 37 degree 5% CO2 incubator
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA extraction plus kit was used to isolate RNA.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	200 ng total RNA converted to cRNA using Affymetrix GeneChip®3' IVT Kit and in vitro transcription resulting into biotin-labeled cRNA, fragmented prior to hybridization (Affymetrix Expression Analysis Technical Manual, as described).
Sample_hyb_protocol	10 ug of cDNA was hybridized for 16 hr to the Affymetrix array as described in the Expression Analysis Technical Manual. GeneChips were washed and stained in the Affymetrix Fluidics Station FS450.
Sample_scan_protocol	Affymetrix GeneArray scanner 7G
Sample_data_processing	Feature intensity was extracted by Affymetrix GeneChip Command Console as CEL files. Chp fies are generated with Affymetrix expression console using MAS5.0.
Sample_platform_id	GPL570
Sample_contact_name	Jeffrey,,Zhao
Sample_contact_email	zhaoy@mskcc.org
Sample_contact_department	Genomics Core
Sample_contact_institute	Memorial Sloan Kettering Cancer Center
Sample_contact_address	1275 York Avenue
Sample_contact_city	New York
Sample_contact_state	RRL417A
Sample_contact_zip/postal_code	10065
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700453/suppl/GSM700453_LW4_AML1-ETOdelNHR1-1_HG-U133_Plus_2.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700453/suppl/GSM700453_LW4_AML1-ETOdelNHR1-1_HG-U133_Plus_2.mas5.CHP.gz
Sample_series_id	GSE28317
Sample_data_row_count	54675

GSM700454

GPL570

AML1-ETO∆NHR1 CD34+ cells rep2

CD34+ cells infected with MIGR1-AML1-ETO∆NHR1

cell type: CD34+ cord blood cells infection: MIGR1-AML1-ETO∆NHR1

Sample_geo_accession	GSM700454
Sample_status	Public on Jul 19 2011
Sample_submission_date	Apr 01 2011
Sample_last_update_date	Jul 19 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Human CD34+ cord blood cells were infected with retrovirus expressing MIGR1, AML1-ETO and AML1-ETO∆NHR1. CD34+GFP+ cells were isolated by FACS.
Sample_growth_protocol_ch1	20% BIT IMEM media with human SCF, TPO, Flt3L and IL6, 37 degree 5% CO2 incubator
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA extraction plus kit was used to isolate RNA.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	200 ng total RNA converted to cRNA using Affymetrix GeneChip®3' IVT Kit and in vitro transcription resulting into biotin-labeled cRNA, fragmented prior to hybridization (Affymetrix Expression Analysis Technical Manual, as described).
Sample_hyb_protocol	10 ug of cDNA was hybridized for 16 hr to the Affymetrix array as described in the Expression Analysis Technical Manual. GeneChips were washed and stained in the Affymetrix Fluidics Station FS450.
Sample_scan_protocol	Affymetrix GeneArray scanner 7G
Sample_data_processing	Feature intensity was extracted by Affymetrix GeneChip Command Console as CEL files. Chp fies are generated with Affymetrix expression console using MAS5.0.
Sample_platform_id	GPL570
Sample_contact_name	Jeffrey,,Zhao
Sample_contact_email	zhaoy@mskcc.org
Sample_contact_department	Genomics Core
Sample_contact_institute	Memorial Sloan Kettering Cancer Center
Sample_contact_address	1275 York Avenue
Sample_contact_city	New York
Sample_contact_state	RRL417A
Sample_contact_zip/postal_code	10065
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700454/suppl/GSM700454_LW5_AML1-ETOdelNHR1-2_HG-U133_Plus_2.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700454/suppl/GSM700454_LW5_AML1-ETOdelNHR1-2_HG-U133_Plus_2.mas5.CHP.gz
Sample_series_id	GSE28317
Sample_data_row_count	54675

GSM700455

GPL570

AML1-ETO∆NHR1 CD34+ cells rep3

CD34+ cells infected with MIGR1-AML1-ETO∆NHR1

cell type: CD34+ cord blood cells infection: MIGR1-AML1-ETO∆NHR1

Sample_geo_accession	GSM700455
Sample_status	Public on Jul 19 2011
Sample_submission_date	Apr 01 2011
Sample_last_update_date	Jul 19 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Human CD34+ cord blood cells were infected with retrovirus expressing MIGR1, AML1-ETO and AML1-ETO∆NHR1. CD34+GFP+ cells were isolated by FACS.
Sample_growth_protocol_ch1	20% BIT IMEM media with human SCF, TPO, Flt3L and IL6, 37 degree 5% CO2 incubator
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA extraction plus kit was used to isolate RNA.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	200 ng total RNA converted to cRNA using Affymetrix GeneChip®3' IVT Kit and in vitro transcription resulting into biotin-labeled cRNA, fragmented prior to hybridization (Affymetrix Expression Analysis Technical Manual, as described).
Sample_hyb_protocol	10 ug of cDNA was hybridized for 16 hr to the Affymetrix array as described in the Expression Analysis Technical Manual. GeneChips were washed and stained in the Affymetrix Fluidics Station FS450.
Sample_scan_protocol	Affymetrix GeneArray scanner 7G
Sample_data_processing	Feature intensity was extracted by Affymetrix GeneChip Command Console as CEL files. Chp fies are generated with Affymetrix expression console using MAS5.0.
Sample_platform_id	GPL570
Sample_contact_name	Jeffrey,,Zhao
Sample_contact_email	zhaoy@mskcc.org
Sample_contact_department	Genomics Core
Sample_contact_institute	Memorial Sloan Kettering Cancer Center
Sample_contact_address	1275 York Avenue
Sample_contact_city	New York
Sample_contact_state	RRL417A
Sample_contact_zip/postal_code	10065
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700455/suppl/GSM700455_LW6_AML1-ETOdelNHR1-3_HG-U133_Plus_2.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700455/suppl/GSM700455_LW6_AML1-ETOdelNHR1-3_HG-U133_Plus_2.mas5.CHP.gz
Sample_series_id	GSE28317
Sample_data_row_count	54675

GSM700456

GPL570

MIGR1 CD34+ cells rep1

CD34+ cells infected with MIGR1

cell type: CD34+ cord blood cells infection: MIGR1

Sample_geo_accession	GSM700456
Sample_status	Public on Jul 19 2011
Sample_submission_date	Apr 01 2011
Sample_last_update_date	Jul 19 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Human CD34+ cord blood cells were infected with retrovirus expressing MIGR1, AML1-ETO and AML1-ETO∆NHR1. CD34+GFP+ cells were isolated by FACS.
Sample_growth_protocol_ch1	20% BIT IMEM media with human SCF, TPO, Flt3L and IL6, 37 degree 5% CO2 incubator
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA extraction plus kit was used to isolate RNA.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	200 ng total RNA converted to cRNA using Affymetrix GeneChip®3' IVT Kit and in vitro transcription resulting into biotin-labeled cRNA, fragmented prior to hybridization (Affymetrix Expression Analysis Technical Manual, as described).
Sample_hyb_protocol	10 ug of cDNA was hybridized for 16 hr to the Affymetrix array as described in the Expression Analysis Technical Manual. GeneChips were washed and stained in the Affymetrix Fluidics Station FS450.
Sample_scan_protocol	Affymetrix GeneArray scanner 7G
Sample_data_processing	Feature intensity was extracted by Affymetrix GeneChip Command Console as CEL files. Chp fies are generated with Affymetrix expression console using MAS5.0.
Sample_platform_id	GPL570
Sample_contact_name	Jeffrey,,Zhao
Sample_contact_email	zhaoy@mskcc.org
Sample_contact_department	Genomics Core
Sample_contact_institute	Memorial Sloan Kettering Cancer Center
Sample_contact_address	1275 York Avenue
Sample_contact_city	New York
Sample_contact_state	RRL417A
Sample_contact_zip/postal_code	10065
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700456/suppl/GSM700456_LW7_MIGR1-1_HG-U133_Plus_2.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700456/suppl/GSM700456_LW7_MIGR1-1_HG-U133_Plus_2.mas5.CHP.gz
Sample_series_id	GSE28317
Sample_data_row_count	54675

GSM700457

GPL570

MIGR1 CD34+ cells rep2

CD34+ cells infected with MIGR1

cell type: CD34+ cord blood cells infection: MIGR1

Sample_geo_accession	GSM700457
Sample_status	Public on Jul 19 2011
Sample_submission_date	Apr 01 2011
Sample_last_update_date	Jul 19 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Human CD34+ cord blood cells were infected with retrovirus expressing MIGR1, AML1-ETO and AML1-ETO∆NHR1. CD34+GFP+ cells were isolated by FACS.
Sample_growth_protocol_ch1	20% BIT IMEM media with human SCF, TPO, Flt3L and IL6, 37 degree 5% CO2 incubator
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA extraction plus kit was used to isolate RNA.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	200 ng total RNA converted to cRNA using Affymetrix GeneChip®3' IVT Kit and in vitro transcription resulting into biotin-labeled cRNA, fragmented prior to hybridization (Affymetrix Expression Analysis Technical Manual, as described).
Sample_hyb_protocol	10 ug of cDNA was hybridized for 16 hr to the Affymetrix array as described in the Expression Analysis Technical Manual. GeneChips were washed and stained in the Affymetrix Fluidics Station FS450.
Sample_scan_protocol	Affymetrix GeneArray scanner 7G
Sample_data_processing	Feature intensity was extracted by Affymetrix GeneChip Command Console as CEL files. Chp fies are generated with Affymetrix expression console using MAS5.0.
Sample_platform_id	GPL570
Sample_contact_name	Jeffrey,,Zhao
Sample_contact_email	zhaoy@mskcc.org
Sample_contact_department	Genomics Core
Sample_contact_institute	Memorial Sloan Kettering Cancer Center
Sample_contact_address	1275 York Avenue
Sample_contact_city	New York
Sample_contact_state	RRL417A
Sample_contact_zip/postal_code	10065
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700457/suppl/GSM700457_LW8_MIGR1-2_HG-U133_Plus_2.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700457/suppl/GSM700457_LW8_MIGR1-2_HG-U133_Plus_2.mas5.CHP.gz
Sample_series_id	GSE28317
Sample_data_row_count	54675

GSM700458

GPL570

MIGR1 CD34+ cells rep3

CD34+ cells infected with MIGR1

cell type: CD34+ cord blood cells infection: MIGR1

Sample_geo_accession	GSM700458
Sample_status	Public on Jul 19 2011
Sample_submission_date	Apr 01 2011
Sample_last_update_date	Jul 19 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Human CD34+ cord blood cells were infected with retrovirus expressing MIGR1, AML1-ETO and AML1-ETO∆NHR1. CD34+GFP+ cells were isolated by FACS.
Sample_growth_protocol_ch1	20% BIT IMEM media with human SCF, TPO, Flt3L and IL6, 37 degree 5% CO2 incubator
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA extraction plus kit was used to isolate RNA.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	200 ng total RNA converted to cRNA using Affymetrix GeneChip®3' IVT Kit and in vitro transcription resulting into biotin-labeled cRNA, fragmented prior to hybridization (Affymetrix Expression Analysis Technical Manual, as described).
Sample_hyb_protocol	10 ug of cDNA was hybridized for 16 hr to the Affymetrix array as described in the Expression Analysis Technical Manual. GeneChips were washed and stained in the Affymetrix Fluidics Station FS450.
Sample_scan_protocol	Affymetrix GeneArray scanner 7G
Sample_data_processing	Feature intensity was extracted by Affymetrix GeneChip Command Console as CEL files. Chp fies are generated with Affymetrix expression console using MAS5.0.
Sample_platform_id	GPL570
Sample_contact_name	Jeffrey,,Zhao
Sample_contact_email	zhaoy@mskcc.org
Sample_contact_department	Genomics Core
Sample_contact_institute	Memorial Sloan Kettering Cancer Center
Sample_contact_address	1275 York Avenue
Sample_contact_city	New York
Sample_contact_state	RRL417A
Sample_contact_zip/postal_code	10065
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700458/suppl/GSM700458_LW9_MIGR1-3_HG-U133_Plus_2.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700458/suppl/GSM700458_LW9_MIGR1-3_HG-U133_Plus_2.mas5.CHP.gz
Sample_series_id	GSE28317
Sample_data_row_count	54675

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