Search results for the GEO ID: GSE28335  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM700742 | GPL570 |
|
Melanoma culture M980513
|
Lymph node metastasis iliacal
|
tumor stage: T2aN3M1c
braf: V600E
nras: wt
hras: Q61K
cell culture phenotype: proliferative
cell origin: Lymph node metastasis iliacal
cell line: M980513
|
|
| Sample_geo_accession | GSM700742
| | Sample_status | Public on Apr 05 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Apr 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 5 mM glutamine, 1 mM sodium pyruvate, 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The biotin-labelled RNA was hybridized to Affymetrix HG-U133 plus 2.0 oligonucleotide microarrays
| | Sample_hyb_protocol | Hybridisation was done with a GeneChip Hybridisation oven 640
| | Sample_scan_protocol | Washing and scanning was done on the GeneChip Fluidics Station 450, the scanner we used was the Affymetrix GeneChip scanner 7G
| | Sample_data_processing | The data was analyzed with GeneSpring GX7.3 (RMA)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,Simon,Widmer
| | Sample_contact_email | daniel.widmer@usz.ch
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University Hospital Zürich
| | Sample_contact_address | Gloriastrasse 31
| | Sample_contact_city | Zürich
| | Sample_contact_zip/postal_code | 8091
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700742/suppl/GSM700742_M980513.CEL.gz
| | Sample_series_id | GSE28335
| | Sample_series_id | GSE33728
| | Sample_data_row_count | 54675
| | |
|
GSM700743 | GPL570 |
|
Melanoma culture M010817
|
Skin metastasis left upper arm
|
tumor stage: TxN1bM1c
braf: wt
nras: Q61R
cell culture phenotype: proliferative
cell origin: Skin metastasis left upper arm
cell line: M010817
|
|
| Sample_geo_accession | GSM700743
| | Sample_status | Public on Apr 05 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Apr 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 5 mM glutamine, 1 mM sodium pyruvate, 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The biotin-labelled RNA was hybridized to Affymetrix HG-U133 plus 2.0 oligonucleotide microarrays
| | Sample_hyb_protocol | Hybridisation was done with a GeneChip Hybridisation oven 640
| | Sample_scan_protocol | Washing and scanning was done on the GeneChip Fluidics Station 450, the scanner we used was the Affymetrix GeneChip scanner 7G
| | Sample_data_processing | The data was analyzed with GeneSpring GX7.3 (RMA)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,Simon,Widmer
| | Sample_contact_email | daniel.widmer@usz.ch
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University Hospital Zürich
| | Sample_contact_address | Gloriastrasse 31
| | Sample_contact_city | Zürich
| | Sample_contact_zip/postal_code | 8091
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700743/suppl/GSM700743_M010817.CEL.gz
| | Sample_series_id | GSE28335
| | Sample_series_id | GSE33728
| | Sample_data_row_count | 54675
| | |
|
GSM700744 | GPL570 |
|
Melanoma culture M050829
|
Skin metastasis retrauricular right
|
tumor stage: T3aN3M0
braf: wt
nras: Q61L
cell culture phenotype: proliferative
cell origin: Skin metastasis retrauricular right
cell line: M050829
|
|
| Sample_geo_accession | GSM700744
| | Sample_status | Public on Apr 05 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Apr 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 5 mM glutamine, 1 mM sodium pyruvate, 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The biotin-labelled RNA was hybridized to Affymetrix HG-U133 plus 2.0 oligonucleotide microarrays
| | Sample_hyb_protocol | Hybridisation was done with a GeneChip Hybridisation oven 640
| | Sample_scan_protocol | Washing and scanning was done on the GeneChip Fluidics Station 450, the scanner we used was the Affymetrix GeneChip scanner 7G
| | Sample_data_processing | The data was analyzed with GeneSpring GX7.3 (RMA)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,Simon,Widmer
| | Sample_contact_email | daniel.widmer@usz.ch
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University Hospital Zürich
| | Sample_contact_address | Gloriastrasse 31
| | Sample_contact_city | Zürich
| | Sample_contact_zip/postal_code | 8091
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700744/suppl/GSM700744_M050829.CEL.gz
| | Sample_series_id | GSE28335
| | Sample_series_id | GSE33728
| | Sample_data_row_count | 54675
| | |
|
GSM700745 | GPL570 |
|
Melanoma culture M000921
|
Epigastric metastasis
|
tumor stage: TxNxM1c
braf: V600E
nras: wt
cell culture phenotype: proliferative
cell origin: Epigastric metastasis
cell line: M000921
|
|
| Sample_geo_accession | GSM700745
| | Sample_status | Public on Apr 05 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Apr 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 5 mM glutamine, 1 mM sodium pyruvate, 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The biotin-labelled RNA was hybridized to Affymetrix HG-U133 plus 2.0 oligonucleotide microarrays
| | Sample_hyb_protocol | Hybridisation was done with a GeneChip Hybridisation oven 640
| | Sample_scan_protocol | Washing and scanning was done on the GeneChip Fluidics Station 450, the scanner we used was the Affymetrix GeneChip scanner 7G
| | Sample_data_processing | The data was analyzed with GeneSpring GX7.3 (RMA)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,Simon,Widmer
| | Sample_contact_email | daniel.widmer@usz.ch
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University Hospital Zürich
| | Sample_contact_address | Gloriastrasse 31
| | Sample_contact_city | Zürich
| | Sample_contact_zip/postal_code | 8091
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700745/suppl/GSM700745_M000921.CEL.gz
| | Sample_series_id | GSE28335
| | Sample_series_id | GSE33728
| | Sample_data_row_count | 54675
| | |
|
GSM700746 | GPL570 |
|
Melanoma culture M080423
|
Lymph node metastasis hepatoduodenal
|
tumor stage: T3bN1aM1a
braf: wt
nras: G12D
cell culture phenotype: proliferative
cell origin: Lymph node metastasis hepatoduodenal
cell line: M080423
|
|
| Sample_geo_accession | GSM700746
| | Sample_status | Public on Apr 05 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Apr 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 5 mM glutamine, 1 mM sodium pyruvate, 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The biotin-labelled RNA was hybridized to Affymetrix HG-U133 plus 2.0 oligonucleotide microarrays
| | Sample_hyb_protocol | Hybridisation was done with a GeneChip Hybridisation oven 640
| | Sample_scan_protocol | Washing and scanning was done on the GeneChip Fluidics Station 450, the scanner we used was the Affymetrix GeneChip scanner 7G
| | Sample_data_processing | The data was analyzed with GeneSpring GX7.3 (RMA)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,Simon,Widmer
| | Sample_contact_email | daniel.widmer@usz.ch
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University Hospital Zürich
| | Sample_contact_address | Gloriastrasse 31
| | Sample_contact_city | Zürich
| | Sample_contact_zip/postal_code | 8091
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700746/suppl/GSM700746_M080423.CEL.gz
| | Sample_series_id | GSE28335
| | Sample_series_id | GSE33728
| | Sample_data_row_count | 54675
| | |
|
GSM700747 | GPL570 |
|
Melanoma culture M080326
|
Primary plantar
|
tumor stage: T4bN2aM0
braf: V600E
nras: wt
cell culture phenotype: proliferative
cell origin: Primary plantar
cell line: M080326
|
|
| Sample_geo_accession | GSM700747
| | Sample_status | Public on Apr 05 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Apr 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 5 mM glutamine, 1 mM sodium pyruvate, 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The biotin-labelled RNA was hybridized to Affymetrix HG-U133 plus 2.0 oligonucleotide microarrays
| | Sample_hyb_protocol | Hybridisation was done with a GeneChip Hybridisation oven 640
| | Sample_scan_protocol | Washing and scanning was done on the GeneChip Fluidics Station 450, the scanner we used was the Affymetrix GeneChip scanner 7G
| | Sample_data_processing | The data was analyzed with GeneSpring GX7.3 (RMA)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,Simon,Widmer
| | Sample_contact_email | daniel.widmer@usz.ch
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University Hospital Zürich
| | Sample_contact_address | Gloriastrasse 31
| | Sample_contact_city | Zürich
| | Sample_contact_zip/postal_code | 8091
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700747/suppl/GSM700747_M080326.CEL.gz
| | Sample_series_id | GSE28335
| | Sample_series_id | GSE33728
| | Sample_data_row_count | 54675
| | |
|
GSM700748 | GPL570 |
|
Melanoma culture M080306
|
Primary capillitium
|
tumor stage: T2N1bM0
braf: wt
nras: wt
cell culture phenotype: invasive
cell origin: Primary capillitium
cell line: M080306
|
|
| Sample_geo_accession | GSM700748
| | Sample_status | Public on Apr 05 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Apr 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 5 mM glutamine, 1 mM sodium pyruvate, 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The biotin-labelled RNA was hybridized to Affymetrix HG-U133 plus 2.0 oligonucleotide microarrays
| | Sample_hyb_protocol | Hybridisation was done with a GeneChip Hybridisation oven 640
| | Sample_scan_protocol | Washing and scanning was done on the GeneChip Fluidics Station 450, the scanner we used was the Affymetrix GeneChip scanner 7G
| | Sample_data_processing | The data was analyzed with GeneSpring GX7.3 (RMA)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,Simon,Widmer
| | Sample_contact_email | daniel.widmer@usz.ch
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University Hospital Zürich
| | Sample_contact_address | Gloriastrasse 31
| | Sample_contact_city | Zürich
| | Sample_contact_zip/postal_code | 8091
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700748/suppl/GSM700748_M080306.CEL.gz
| | Sample_series_id | GSE28335
| | Sample_series_id | GSE33728
| | Sample_data_row_count | 54675
| | |
|
GSM700749 | GPL570 |
|
Melanoma culture M061103
|
Skin metastasis capillitium
|
tumor stage: T4N1bM0
braf: wt
nras: wt
hras: Q61K
cell culture phenotype: invasive
cell origin: Skin metastasis capillitium
cell line: M061103
|
|
| Sample_geo_accession | GSM700749
| | Sample_status | Public on Apr 05 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Apr 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 5 mM glutamine, 1 mM sodium pyruvate, 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The biotin-labelled RNA was hybridized to Affymetrix HG-U133 plus 2.0 oligonucleotide microarrays
| | Sample_hyb_protocol | Hybridisation was done with a GeneChip Hybridisation oven 640
| | Sample_scan_protocol | Washing and scanning was done on the GeneChip Fluidics Station 450, the scanner we used was the Affymetrix GeneChip scanner 7G
| | Sample_data_processing | The data was analyzed with GeneSpring GX7.3 (RMA)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,Simon,Widmer
| | Sample_contact_email | daniel.widmer@usz.ch
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University Hospital Zürich
| | Sample_contact_address | Gloriastrasse 31
| | Sample_contact_city | Zürich
| | Sample_contact_zip/postal_code | 8091
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700749/suppl/GSM700749_M061103.CEL.gz
| | Sample_series_id | GSE28335
| | Sample_series_id | GSE33728
| | Sample_data_row_count | 54675
| | |
|
GSM700750 | GPL570 |
|
Melanoma culture M060125
|
Skin metastasis scapula
|
tumor stage: TxNxM1c
braf: V600E
nras: wt
hras: Q61K
cell culture phenotype: invasive
cell origin: Skin metastasis scapula
cell line: M060125
|
|
| Sample_geo_accession | GSM700750
| | Sample_status | Public on Apr 05 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Apr 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 5 mM glutamine, 1 mM sodium pyruvate, 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The biotin-labelled RNA was hybridized to Affymetrix HG-U133 plus 2.0 oligonucleotide microarrays
| | Sample_hyb_protocol | Hybridisation was done with a GeneChip Hybridisation oven 640
| | Sample_scan_protocol | Washing and scanning was done on the GeneChip Fluidics Station 450, the scanner we used was the Affymetrix GeneChip scanner 7G
| | Sample_data_processing | The data was analyzed with GeneSpring GX7.3 (RMA)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,Simon,Widmer
| | Sample_contact_email | daniel.widmer@usz.ch
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University Hospital Zürich
| | Sample_contact_address | Gloriastrasse 31
| | Sample_contact_city | Zürich
| | Sample_contact_zip/postal_code | 8091
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700750/suppl/GSM700750_M060125.CEL.gz
| | Sample_series_id | GSE28335
| | Sample_series_id | GSE33728
| | Sample_data_row_count | 54675
| | |
|
GSM700751 | GPL570 |
|
Melanoma culture M010119
|
Skin metastasis shoulder
|
tumor stage: T2bN3M0
braf: L597S
nras: wt
cell culture phenotype: invasive
cell origin: Skin metastasis shoulder
cell line: M010119
|
|
| Sample_geo_accession | GSM700751
| | Sample_status | Public on Apr 05 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Apr 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 5 mM glutamine, 1 mM sodium pyruvate, 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The biotin-labelled RNA was hybridized to Affymetrix HG-U133 plus 2.0 oligonucleotide microarrays
| | Sample_hyb_protocol | Hybridisation was done with a GeneChip Hybridisation oven 640
| | Sample_scan_protocol | Washing and scanning was done on the GeneChip Fluidics Station 450, the scanner we used was the Affymetrix GeneChip scanner 7G
| | Sample_data_processing | The data was analyzed with GeneSpring GX7.3 (RMA)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,Simon,Widmer
| | Sample_contact_email | daniel.widmer@usz.ch
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University Hospital Zürich
| | Sample_contact_address | Gloriastrasse 31
| | Sample_contact_city | Zürich
| | Sample_contact_zip/postal_code | 8091
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700751/suppl/GSM700751_M010119.CEL.gz
| | Sample_series_id | GSE28335
| | Sample_series_id | GSE33728
| | Sample_data_row_count | 54675
| | |
|
GSM700752 | GPL570 |
|
Melanoma culture M081008
|
Primary face
|
tumor stage: T1aN0M0
braf: wt
nras: wt
cell culture phenotype: invasive
cell origin: Primary face
cell line: M081008
|
|
| Sample_geo_accession | GSM700752
| | Sample_status | Public on Apr 05 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Apr 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 5 mM glutamine, 1 mM sodium pyruvate, 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The biotin-labelled RNA was hybridized to Affymetrix HG-U133 plus 2.0 oligonucleotide microarrays
| | Sample_hyb_protocol | Hybridisation was done with a GeneChip Hybridisation oven 640
| | Sample_scan_protocol | Washing and scanning was done on the GeneChip Fluidics Station 450, the scanner we used was the Affymetrix GeneChip scanner 7G
| | Sample_data_processing | The data was analyzed with GeneSpring GX7.3 (RMA)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,Simon,Widmer
| | Sample_contact_email | daniel.widmer@usz.ch
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University Hospital Zürich
| | Sample_contact_address | Gloriastrasse 31
| | Sample_contact_city | Zürich
| | Sample_contact_zip/postal_code | 8091
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700752/suppl/GSM700752_M081008.CEL.gz
| | Sample_series_id | GSE28335
| | Sample_series_id | GSE33728
| | Sample_data_row_count | 54675
| | |
|
GSM700753 | GPL570 |
|
Melanoma culture M080307
|
Soft tissue metastasis axilla
|
tumor stage: T4N2M1c
braf: wt
nras: wt
hras: Q61K
cell culture phenotype: invasive
cell origin: Soft tissue metastasis axilla
cell line: M080307
|
|
| Sample_geo_accession | GSM700753
| | Sample_status | Public on Apr 05 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Apr 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 5 mM glutamine, 1 mM sodium pyruvate, 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The biotin-labelled RNA was hybridized to Affymetrix HG-U133 plus 2.0 oligonucleotide microarrays
| | Sample_hyb_protocol | Hybridisation was done with a GeneChip Hybridisation oven 640
| | Sample_scan_protocol | Washing and scanning was done on the GeneChip Fluidics Station 450, the scanner we used was the Affymetrix GeneChip scanner 7G
| | Sample_data_processing | The data was analyzed with GeneSpring GX7.3 (RMA)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,Simon,Widmer
| | Sample_contact_email | daniel.widmer@usz.ch
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University Hospital Zürich
| | Sample_contact_address | Gloriastrasse 31
| | Sample_contact_city | Zürich
| | Sample_contact_zip/postal_code | 8091
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700753/suppl/GSM700753_M080307.CEL.gz
| | Sample_series_id | GSE28335
| | Sample_series_id | GSE33728
| | Sample_data_row_count | 54675
| | |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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