Search results for the GEO ID: GSE28339  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM700769 | GPL570 |
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MM control shRNA- biological replicate 1
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HeLa cells
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cell line: HeLa
treatment: mismatch MM control
|
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| Sample_geo_accession | GSM700769
| | Sample_status | Public on Aug 03 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Aug 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HeLa cells were transduced with shRNA virus against Cyclin T2 or Cyclin T1 or MM control for five days.
| | Sample_growth_protocol_ch1 | HeLa cells were maintained in DMEM (Invitrogen) supplemented with 10% fetal bovine serum (Invitrogen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen Rneasy kit according to the manufacturer's protocol and RNA quality was determined using an Aligent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100
| | Sample_data_processing | CEL files for each array were uploaded into GeneSifter and the data normalized and log transformed using the GC-RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Rice
| | Sample_contact_email | arice@bcm.edu
| | Sample_contact_phone | 713-798-5774
| | Sample_contact_fax | 713-798-3490
| | Sample_contact_department | Molecular Virology & Microbiology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | MS BCM385,One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700769/suppl/GSM700769_Expt_1-MM.CEL.gz
| | Sample_series_id | GSE28339
| | Sample_data_row_count | 54675
| | |
|
GSM700770 | GPL570 |
|
Cyclin T1 shRNA-biological replicate 1
|
HeLa cells
|
cell line: HeLa
treatment: Cyclin T1 knockdown
|
|
| Sample_geo_accession | GSM700770
| | Sample_status | Public on Aug 03 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Aug 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HeLa cells were transduced with shRNA virus against Cyclin T2 or Cyclin T1 or MM control for five days.
| | Sample_growth_protocol_ch1 | HeLa cells were maintained in DMEM (Invitrogen) supplemented with 10% fetal bovine serum (Invitrogen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen Rneasy kit according to the manufacturer's protocol and RNA quality was determined using an Aligent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100
| | Sample_data_processing | CEL files for each array were uploaded into GeneSifter and the data normalized and log transformed using the GC-RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Rice
| | Sample_contact_email | arice@bcm.edu
| | Sample_contact_phone | 713-798-5774
| | Sample_contact_fax | 713-798-3490
| | Sample_contact_department | Molecular Virology & Microbiology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | MS BCM385,One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700770/suppl/GSM700770_Expt_1-T1.CEL.gz
| | Sample_series_id | GSE28339
| | Sample_data_row_count | 54675
| | |
|
GSM700771 | GPL570 |
|
Cyclin T2 shRNA-biological replicate 1
|
HeLa cells
|
cell line: HeLa
treatment: Cyclin T2 knockdown
|
|
| Sample_geo_accession | GSM700771
| | Sample_status | Public on Aug 03 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Aug 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HeLa cells were transduced with shRNA virus against Cyclin T2 or Cyclin T1 or MM control for five days.
| | Sample_growth_protocol_ch1 | HeLa cells were maintained in DMEM (Invitrogen) supplemented with 10% fetal bovine serum (Invitrogen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen Rneasy kit according to the manufacturer's protocol and RNA quality was determined using an Aligent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100
| | Sample_data_processing | CEL files for each array were uploaded into GeneSifter and the data normalized and log transformed using the GC-RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Rice
| | Sample_contact_email | arice@bcm.edu
| | Sample_contact_phone | 713-798-5774
| | Sample_contact_fax | 713-798-3490
| | Sample_contact_department | Molecular Virology & Microbiology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | MS BCM385,One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700771/suppl/GSM700771_Expt_1-T2.CEL.gz
| | Sample_series_id | GSE28339
| | Sample_data_row_count | 54675
| | |
|
GSM700772 | GPL570 |
|
MM control shRNA- biological replicate 2
|
HeLa cells
|
cell line: HeLa
treatment: mismatch MM control
|
|
| Sample_geo_accession | GSM700772
| | Sample_status | Public on Aug 03 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Aug 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HeLa cells were transduced with shRNA virus against Cyclin T2 or Cyclin T1 or MM control for five days.
| | Sample_growth_protocol_ch1 | HeLa cells were maintained in DMEM (Invitrogen) supplemented with 10% fetal bovine serum (Invitrogen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen Rneasy kit according to the manufacturer's protocol and RNA quality was determined using an Aligent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100
| | Sample_data_processing | CEL files for each array were uploaded into GeneSifter and the data normalized and log transformed using the GC-RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Rice
| | Sample_contact_email | arice@bcm.edu
| | Sample_contact_phone | 713-798-5774
| | Sample_contact_fax | 713-798-3490
| | Sample_contact_department | Molecular Virology & Microbiology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | MS BCM385,One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700772/suppl/GSM700772_Expt_2-MM.CEL.gz
| | Sample_series_id | GSE28339
| | Sample_data_row_count | 54675
| | |
|
GSM700773 | GPL570 |
|
Cyclin T1 shRNA-biological replicate 2
|
HeLa cells
|
cell line: HeLa
treatment: Cyclin T1 knockdown
|
|
| Sample_geo_accession | GSM700773
| | Sample_status | Public on Aug 03 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Aug 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HeLa cells were transduced with shRNA virus against Cyclin T2 or Cyclin T1 or MM control for five days.
| | Sample_growth_protocol_ch1 | HeLa cells were maintained in DMEM (Invitrogen) supplemented with 10% fetal bovine serum (Invitrogen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen Rneasy kit according to the manufacturer's protocol and RNA quality was determined using an Aligent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100
| | Sample_data_processing | CEL files for each array were uploaded into GeneSifter and the data normalized and log transformed using the GC-RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Rice
| | Sample_contact_email | arice@bcm.edu
| | Sample_contact_phone | 713-798-5774
| | Sample_contact_fax | 713-798-3490
| | Sample_contact_department | Molecular Virology & Microbiology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | MS BCM385,One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700773/suppl/GSM700773_Expt2-T1.CEL.gz
| | Sample_series_id | GSE28339
| | Sample_data_row_count | 54675
| | |
|
GSM700774 | GPL570 |
|
Cyclin T2 shRNA-biological replicate 2
|
HeLa cells
|
cell line: HeLa
treatment: Cyclin T2 knockdown
|
|
| Sample_geo_accession | GSM700774
| | Sample_status | Public on Aug 03 2011
| | Sample_submission_date | Apr 02 2011
| | Sample_last_update_date | Aug 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HeLa cells were transduced with shRNA virus against Cyclin T2 or Cyclin T1 or MM control for five days.
| | Sample_growth_protocol_ch1 | HeLa cells were maintained in DMEM (Invitrogen) supplemented with 10% fetal bovine serum (Invitrogen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen Rneasy kit according to the manufacturer's protocol and RNA quality was determined using an Aligent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100
| | Sample_data_processing | CEL files for each array were uploaded into GeneSifter and the data normalized and log transformed using the GC-RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Rice
| | Sample_contact_email | arice@bcm.edu
| | Sample_contact_phone | 713-798-5774
| | Sample_contact_fax | 713-798-3490
| | Sample_contact_department | Molecular Virology & Microbiology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | MS BCM385,One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM700nnn/GSM700774/suppl/GSM700774_Expt_2-T2.CEL.gz
| | Sample_series_id | GSE28339
| | Sample_data_row_count | 54675
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