Search results for the GEO ID: GSE28406  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM702125 | GPL570 |
|
primary dermal papilla cells, biological repeat 1
|
adult male dermal papilla cells
|
cell type: primary dermal papilla cells
gender: male
developmental stage: adult
|
DPC1
Gene expression data from DPC.
|
| Sample_geo_accession | GSM702125
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702125/suppl/GSM702125.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702125/suppl/GSM702125.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702126 | GPL570 |
|
primary dermal papilla cells, biological repeat 2
|
adult male dermal papilla cells
|
cell type: primary dermal papilla cells
gender: male
developmental stage: adult
|
DPC2
Gene expression data from DPC.
|
| Sample_geo_accession | GSM702126
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702126/suppl/GSM702126.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702126/suppl/GSM702126.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702127 | GPL570 |
|
iDPC subclone 3, biological repeat 1
|
induced pluripotency cells from DPC, subclone 3
|
cell type: induced pluripotency cells from DPC
subclone: 3
gender: male
|
iDPC3-1
Gene expression data from iDPC.
|
| Sample_geo_accession | GSM702127
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702127/suppl/GSM702127.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702127/suppl/GSM702127.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702128 | GPL570 |
|
iDPC subclone 3, biological repeat 2
|
induced pluripotency cells from DPC, subclone 3
|
cell type: induced pluripotency cells from DPC
subclone: 3
gender: male
|
iDPC3-2
Gene expression data from iDPC.
|
| Sample_geo_accession | GSM702128
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702128/suppl/GSM702128.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702128/suppl/GSM702128.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702129 | GPL570 |
|
primary granulosa cells, biological repeat 1
|
granulosa cells
|
cell type: primary granulosa cells
gender: female
|
Gra1
Gene expression data from granulosa cells.
|
| Sample_geo_accession | GSM702129
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702129/suppl/GSM702129.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702129/suppl/GSM702129.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702130 | GPL570 |
|
primary granulosa cells, biological repeat 2
|
granulosa cells
|
cell type: primary granulosa cells
gender: female
|
Gra2
Gene expression data from granulosa cells.
|
| Sample_geo_accession | GSM702130
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702130/suppl/GSM702130.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702130/suppl/GSM702130.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702131 | GPL570 |
|
igra subclone 1, biological repeat 1
|
induced pluripotency cells from granulosa cells, subclone 1
|
cell type: induced pluripotency cells from granulosa cells
subclone: 1
gender: female
|
iGra1-1
Gene expression data from iGra cells.
|
| Sample_geo_accession | GSM702131
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702131/suppl/GSM702131.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702131/suppl/GSM702131.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702132 | GPL570 |
|
igra subclone 1, biological repeat 2
|
induced pluripotency cells from granulosa cells, subclone 1
|
cell type: induced pluripotency cells from granulosa cells
subclone: 1
gender: female
|
iGra1-2
Gene expression data from iGra cells.
|
| Sample_geo_accession | GSM702132
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702132/suppl/GSM702132.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702132/suppl/GSM702132.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702133 | GPL570 |
|
igra subclone 2, biological repeat 1
|
induced pluripotency cells from granulosa cells, subclone 2
|
cell type: induced pluripotency cells from granulosa cells
subclone: 2
gender: female
|
iGra2-1
Gene expression data from iGra cells.
|
| Sample_geo_accession | GSM702133
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702133/suppl/GSM702133.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702133/suppl/GSM702133.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702134 | GPL570 |
|
igra subclone 2, biological repeat 2
|
induced pluripotency cells from granulosa cells, subclone 2
|
cell type: induced pluripotency cells from granulosa cells
subclone: 2
gender: female
|
iGra2-2
Gene expression data from iGra cells.
|
| Sample_geo_accession | GSM702134
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702134/suppl/GSM702134.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702134/suppl/GSM702134.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702135 | GPL570 |
|
primary foreskin cells, biological repeat 1
|
adult foreskin cells
|
cell type: primary foreskin cells
gender: male
developmental stage: adult
|
foreskin1
Gene expression data from foreskin cells.
|
| Sample_geo_accession | GSM702135
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702135/suppl/GSM702135.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702135/suppl/GSM702135.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702136 | GPL570 |
|
primary foreskin cells, biological repeat 2
|
adult foreskin cells
|
cell type: primary foreskin cells
gender: male
developmental stage: adult
|
foreskin2
Gene expression data from foreskin cells.
|
| Sample_geo_accession | GSM702136
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702136/suppl/GSM702136.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702136/suppl/GSM702136.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702137 | GPL570 |
|
iCFB subclone 46, biological repeat 1
|
induced pluripotency cells from foreskin cells, subclone 46
|
cell type: induced pluripotency cells from foreskin cells
subclone: 46
gender: male
|
iCFB46-1
Gene expression data from iCFB cells.
|
| Sample_geo_accession | GSM702137
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702137/suppl/GSM702137.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702137/suppl/GSM702137.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702138 | GPL570 |
|
iCFB subclone 46, biological repeat 2
|
induced pluripotency cells from foreskin cells, subclone 46
|
cell type: induced pluripotency cells from foreskin cells
subclone: 46
gender: male
|
iCFB46-2
Gene expression data from iCFB cells.
|
| Sample_geo_accession | GSM702138
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702138/suppl/GSM702138.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702138/suppl/GSM702138.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702139 | GPL570 |
|
iCFB subclone 50, biological repeat 1
|
induced pluripotency cells from foreskin cells, subclone 50
|
cell type: induced pluripotency cells from foreskin cells
subclone: 50
gender: male
|
iCFB50-1
Gene expression data from iCFB cells.
|
| Sample_geo_accession | GSM702139
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702139/suppl/GSM702139.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702139/suppl/GSM702139.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
GSM702140 | GPL570 |
|
iCFB subclone 50, biological repeat 2
|
induced pluripotency cells from foreskin cells, subclone 50
|
cell type: induced pluripotency cells from foreskin cells
subclone: 50
gender: male
|
iCFB50-2
Gene expression data from iCFB cells.
|
| Sample_geo_accession | GSM702140
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Apr 05 2011
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Pluripotent cells were grown on MEF feeders in DMEM/F12 medium plus 20% Knockout Serum Replacement and bFGF. The parental cells were grown in DMDM plus 10% FBS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Global scaling was used as the normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chun,Ying,Yu
| | Sample_contact_email | harrisman@gmail.com
| | Sample_contact_laboratory | stem cell
| | Sample_contact_department | Genomic Research center
| | Sample_contact_institute | Academia sinica
| | Sample_contact_address | 128 Academia Road, Section 2
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702140/suppl/GSM702140.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702140/suppl/GSM702140.CHP.gz
| | Sample_series_id | GSE28406
| | Sample_data_row_count | 54675
| | |
|
| |
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