Search results for the GEO ID: GSE28417  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM702256 | GPL1261 |
|
Heart_WT
|
Heart Wild type
|
age: 2 months old
strain: Sv/129
tissue: heart
genotype: Wild type
|
pool of RNA (4 mice)
|
| Sample_geo_accession | GSM702256
| | Sample_status | Public on Apr 02 2012
| | Sample_submission_date | Apr 06 2011
| | Sample_last_update_date | Apr 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Total RNA was extracted from freshly isolated thymus, liver, heart and lung of two months old mice (pool of four mice for each genotype)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to Affymetrix OneCycle amplification protocol from 3000 ng total RNA, and labeled using the IVT Labeling Kit
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430 2.0 array. GeneChip arrays were washed and stained in the Affymetrix Fluidic Station 450.
| | Sample_scan_protocol | GeneChip array images were scanned using the Affymetrix GeneChip Scanner 30007G instrument.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite v 6.5 using RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Simone ,Paolo,Minardi
| | Sample_contact_email | simone.minardi@ifom-ieo-campus.it
| | Sample_contact_phone | +39 02 574303703
| | Sample_contact_department | Microarray and NGS Unit
| | Sample_contact_institute | Cogentech
| | Sample_contact_address | Via Adamello
| | Sample_contact_city | Milano
| | Sample_contact_state | Italy
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702256/suppl/GSM702256.CEL.gz
| | Sample_series_id | GSE28417
| | Sample_series_id | GSE28418
| | Sample_data_row_count | 45101
| | |
|
GSM702257 | GPL1261 |
|
Liver_WT
|
Liver Wild type
|
age: 2 months old
strain: Sv/129
tissue: liver
genotype: Wild type
|
pool of RNA (4 mice)
|
| Sample_geo_accession | GSM702257
| | Sample_status | Public on Apr 02 2012
| | Sample_submission_date | Apr 06 2011
| | Sample_last_update_date | Apr 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Total RNA was extracted from freshly isolated thymus, liver, heart and lung of two months old mice (pool of four mice for each genotype)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to Affymetrix OneCycle amplification protocol from 3000 ng total RNA, and labeled using the IVT Labeling Kit
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430 2.0 array. GeneChip arrays were washed and stained in the Affymetrix Fluidic Station 450.
| | Sample_scan_protocol | GeneChip array images were scanned using the Affymetrix GeneChip Scanner 30007G instrument.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite v 6.5 using RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Simone ,Paolo,Minardi
| | Sample_contact_email | simone.minardi@ifom-ieo-campus.it
| | Sample_contact_phone | +39 02 574303703
| | Sample_contact_department | Microarray and NGS Unit
| | Sample_contact_institute | Cogentech
| | Sample_contact_address | Via Adamello
| | Sample_contact_city | Milano
| | Sample_contact_state | Italy
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702257/suppl/GSM702257.CEL.gz
| | Sample_series_id | GSE28417
| | Sample_series_id | GSE28418
| | Sample_data_row_count | 45101
| | |
|
GSM702258 | GPL1261 |
|
Lung_WT
|
Lung Wild type
|
age: 2 months old
strain: Sv/129
tissue: lung
genotype: Wild type
|
pool of RNA (4 mice)
|
| Sample_geo_accession | GSM702258
| | Sample_status | Public on Apr 02 2012
| | Sample_submission_date | Apr 06 2011
| | Sample_last_update_date | Apr 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Total RNA was extracted from freshly isolated thymus, liver, heart and lung of two months old mice (pool of four mice for each genotype)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to Affymetrix OneCycle amplification protocol from 3000 ng total RNA, and labeled using the IVT Labeling Kit
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430 2.0 array. GeneChip arrays were washed and stained in the Affymetrix Fluidic Station 450.
| | Sample_scan_protocol | GeneChip array images were scanned using the Affymetrix GeneChip Scanner 30007G instrument.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite v 6.5 using RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Simone ,Paolo,Minardi
| | Sample_contact_email | simone.minardi@ifom-ieo-campus.it
| | Sample_contact_phone | +39 02 574303703
| | Sample_contact_department | Microarray and NGS Unit
| | Sample_contact_institute | Cogentech
| | Sample_contact_address | Via Adamello
| | Sample_contact_city | Milano
| | Sample_contact_state | Italy
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702258/suppl/GSM702258.CEL.gz
| | Sample_series_id | GSE28417
| | Sample_series_id | GSE28418
| | Sample_data_row_count | 45101
| | |
|
GSM702259 | GPL1261 |
|
Thymus_WT
|
Thymus Wild type
|
age: 2 months old
strain: Sv/129
tissue: thymus
genotype: Wild type
|
pool of RNA (4 mice)
|
| Sample_geo_accession | GSM702259
| | Sample_status | Public on Apr 02 2012
| | Sample_submission_date | Apr 06 2011
| | Sample_last_update_date | Apr 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Total RNA was extracted from freshly isolated thymus, liver, heart and lung of two months old mice (pool of four mice for each genotype)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to Affymetrix OneCycle amplification protocol from 3000 ng total RNA, and labeled using the IVT Labeling Kit
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430 2.0 array. GeneChip arrays were washed and stained in the Affymetrix Fluidic Station 450.
| | Sample_scan_protocol | GeneChip array images were scanned using the Affymetrix GeneChip Scanner 30007G instrument.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite v 6.5 using RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Simone ,Paolo,Minardi
| | Sample_contact_email | simone.minardi@ifom-ieo-campus.it
| | Sample_contact_phone | +39 02 574303703
| | Sample_contact_department | Microarray and NGS Unit
| | Sample_contact_institute | Cogentech
| | Sample_contact_address | Via Adamello
| | Sample_contact_city | Milano
| | Sample_contact_state | Italy
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702259/suppl/GSM702259.CEL.gz
| | Sample_series_id | GSE28417
| | Sample_series_id | GSE28418
| | Sample_data_row_count | 45101
| | |
|
GSM702260 | GPL1261 |
|
Heart_p66KO
|
Heart p66 knock-out (p66-/-)
|
age: 2 months old
strain: Sv/129
tissue: heart
genotype: p66 knock-out (p66-/-)
|
pool of RNA (4 mice)
|
| Sample_geo_accession | GSM702260
| | Sample_status | Public on Apr 02 2012
| | Sample_submission_date | Apr 06 2011
| | Sample_last_update_date | Apr 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Total RNA was extracted from freshly isolated thymus, liver, heart and lung of two months old mice (pool of four mice for each genotype)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to Affymetrix OneCycle amplification protocol from 3000 ng total RNA, and labeled using the IVT Labeling Kit
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430 2.0 array. GeneChip arrays were washed and stained in the Affymetrix Fluidic Station 450.
| | Sample_scan_protocol | GeneChip array images were scanned using the Affymetrix GeneChip Scanner 30007G instrument.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite v 6.5 using RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Simone ,Paolo,Minardi
| | Sample_contact_email | simone.minardi@ifom-ieo-campus.it
| | Sample_contact_phone | +39 02 574303703
| | Sample_contact_department | Microarray and NGS Unit
| | Sample_contact_institute | Cogentech
| | Sample_contact_address | Via Adamello
| | Sample_contact_city | Milano
| | Sample_contact_state | Italy
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702260/suppl/GSM702260.CEL.gz
| | Sample_series_id | GSE28417
| | Sample_series_id | GSE28418
| | Sample_data_row_count | 45101
| | |
|
GSM702261 | GPL1261 |
|
Liver_p66KO
|
Liver p66 knock-out (p66-/-)
|
age: 2 months old
strain: Sv/129
tissue: liver
genotype: p66 knock-out (p66-/-)
|
pool of RNA (4 mice)
|
| Sample_geo_accession | GSM702261
| | Sample_status | Public on Apr 02 2012
| | Sample_submission_date | Apr 06 2011
| | Sample_last_update_date | Apr 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Total RNA was extracted from freshly isolated thymus, liver, heart and lung of two months old mice (pool of four mice for each genotype)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to Affymetrix OneCycle amplification protocol from 3000 ng total RNA, and labeled using the IVT Labeling Kit
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430 2.0 array. GeneChip arrays were washed and stained in the Affymetrix Fluidic Station 450.
| | Sample_scan_protocol | GeneChip array images were scanned using the Affymetrix GeneChip Scanner 30007G instrument.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite v 6.5 using RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Simone ,Paolo,Minardi
| | Sample_contact_email | simone.minardi@ifom-ieo-campus.it
| | Sample_contact_phone | +39 02 574303703
| | Sample_contact_department | Microarray and NGS Unit
| | Sample_contact_institute | Cogentech
| | Sample_contact_address | Via Adamello
| | Sample_contact_city | Milano
| | Sample_contact_state | Italy
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702261/suppl/GSM702261.CEL.gz
| | Sample_series_id | GSE28417
| | Sample_series_id | GSE28418
| | Sample_data_row_count | 45101
| | |
|
GSM702262 | GPL1261 |
|
Lung_p66KO
|
Lung p66 knock-out (p66-/-)
|
age: 2 months old
strain: Sv/129
tissue: lung
genotype: p66 knock-out (p66-/-)
|
pool of RNA (4 mice)
|
| Sample_geo_accession | GSM702262
| | Sample_status | Public on Apr 02 2012
| | Sample_submission_date | Apr 06 2011
| | Sample_last_update_date | Apr 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Total RNA was extracted from freshly isolated thymus, liver, heart and lung of two months old mice (pool of four mice for each genotype)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to Affymetrix OneCycle amplification protocol from 3000 ng total RNA, and labeled using the IVT Labeling Kit
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430 2.0 array. GeneChip arrays were washed and stained in the Affymetrix Fluidic Station 450.
| | Sample_scan_protocol | GeneChip array images were scanned using the Affymetrix GeneChip Scanner 30007G instrument.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite v 6.5 using RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Simone ,Paolo,Minardi
| | Sample_contact_email | simone.minardi@ifom-ieo-campus.it
| | Sample_contact_phone | +39 02 574303703
| | Sample_contact_department | Microarray and NGS Unit
| | Sample_contact_institute | Cogentech
| | Sample_contact_address | Via Adamello
| | Sample_contact_city | Milano
| | Sample_contact_state | Italy
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702262/suppl/GSM702262.CEL.gz
| | Sample_series_id | GSE28417
| | Sample_series_id | GSE28418
| | Sample_data_row_count | 45101
| | |
|
GSM702263 | GPL1261 |
|
Thymus_p66KO
|
Thymus p66 knock-out (p66-/-)
|
age: 2 months old
strain: Sv/129
tissue: thymus
genotype: p66 knock-out (p66-/-)
|
pool of RNA (4 mice)
|
| Sample_geo_accession | GSM702263
| | Sample_status | Public on Apr 02 2012
| | Sample_submission_date | Apr 06 2011
| | Sample_last_update_date | Apr 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Total RNA was extracted from freshly isolated thymus, liver, heart and lung of two months old mice (pool of four mice for each genotype)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to Affymetrix OneCycle amplification protocol from 3000 ng total RNA, and labeled using the IVT Labeling Kit
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430 2.0 array. GeneChip arrays were washed and stained in the Affymetrix Fluidic Station 450.
| | Sample_scan_protocol | GeneChip array images were scanned using the Affymetrix GeneChip Scanner 30007G instrument.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite v 6.5 using RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Simone ,Paolo,Minardi
| | Sample_contact_email | simone.minardi@ifom-ieo-campus.it
| | Sample_contact_phone | +39 02 574303703
| | Sample_contact_department | Microarray and NGS Unit
| | Sample_contact_institute | Cogentech
| | Sample_contact_address | Via Adamello
| | Sample_contact_city | Milano
| | Sample_contact_state | Italy
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702263/suppl/GSM702263.CEL.gz
| | Sample_series_id | GSE28417
| | Sample_series_id | GSE28418
| | Sample_data_row_count | 45101
| | |
|
GSM702264 | GPL1261 |
|
Heart_p53KO
|
Heart p53 knock-out (p53-/-)
|
age: 2 months old
strain: Sv/129
tissue: heart
genotype: p53 knock-out (p53-/-)
|
pool of RNA (4 mice)
|
| Sample_geo_accession | GSM702264
| | Sample_status | Public on Apr 02 2012
| | Sample_submission_date | Apr 06 2011
| | Sample_last_update_date | Apr 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Total RNA was extracted from freshly isolated thymus, liver, heart and lung of two months old mice (pool of four mice for each genotype)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to Affymetrix OneCycle amplification protocol from 3000 ng total RNA, and labeled using the IVT Labeling Kit
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430 2.0 array. GeneChip arrays were washed and stained in the Affymetrix Fluidic Station 450.
| | Sample_scan_protocol | GeneChip array images were scanned using the Affymetrix GeneChip Scanner 30007G instrument.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite v 6.5 using RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Simone ,Paolo,Minardi
| | Sample_contact_email | simone.minardi@ifom-ieo-campus.it
| | Sample_contact_phone | +39 02 574303703
| | Sample_contact_department | Microarray and NGS Unit
| | Sample_contact_institute | Cogentech
| | Sample_contact_address | Via Adamello
| | Sample_contact_city | Milano
| | Sample_contact_state | Italy
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702264/suppl/GSM702264.CEL.gz
| | Sample_series_id | GSE28417
| | Sample_series_id | GSE28418
| | Sample_data_row_count | 45101
| | |
|
GSM702265 | GPL1261 |
|
Liver_p53KO
|
Liver p53 knock-out (p53-/-)
|
age: 2 months old
strain: Sv/129
tissue: liver
genotype: p53 knock-out (p53-/-)
|
pool of RNA (4 mice)
|
| Sample_geo_accession | GSM702265
| | Sample_status | Public on Apr 02 2012
| | Sample_submission_date | Apr 06 2011
| | Sample_last_update_date | Apr 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Total RNA was extracted from freshly isolated thymus, liver, heart and lung of two months old mice (pool of four mice for each genotype)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to Affymetrix OneCycle amplification protocol from 3000 ng total RNA, and labeled using the IVT Labeling Kit
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430 2.0 array. GeneChip arrays were washed and stained in the Affymetrix Fluidic Station 450.
| | Sample_scan_protocol | GeneChip array images were scanned using the Affymetrix GeneChip Scanner 30007G instrument.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite v 6.5 using RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Simone ,Paolo,Minardi
| | Sample_contact_email | simone.minardi@ifom-ieo-campus.it
| | Sample_contact_phone | +39 02 574303703
| | Sample_contact_department | Microarray and NGS Unit
| | Sample_contact_institute | Cogentech
| | Sample_contact_address | Via Adamello
| | Sample_contact_city | Milano
| | Sample_contact_state | Italy
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702265/suppl/GSM702265.CEL.gz
| | Sample_series_id | GSE28417
| | Sample_series_id | GSE28418
| | Sample_data_row_count | 45101
| | |
|
GSM702266 | GPL1261 |
|
Lung_p53KO
|
Lung p53 knock-out (p53-/-)
|
age: 2 months old
strain: Sv/129
tissue: lung
genotype: p53 knock-out (p53-/-)
|
pool of RNA (4 mice)
|
| Sample_geo_accession | GSM702266
| | Sample_status | Public on Apr 02 2012
| | Sample_submission_date | Apr 06 2011
| | Sample_last_update_date | Apr 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Total RNA was extracted from freshly isolated thymus, liver, heart and lung of two months old mice (pool of four mice for each genotype)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to Affymetrix OneCycle amplification protocol from 3000 ng total RNA, and labeled using the IVT Labeling Kit
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430 2.0 array. GeneChip arrays were washed and stained in the Affymetrix Fluidic Station 450.
| | Sample_scan_protocol | GeneChip array images were scanned using the Affymetrix GeneChip Scanner 30007G instrument.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite v 6.5 using RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Simone ,Paolo,Minardi
| | Sample_contact_email | simone.minardi@ifom-ieo-campus.it
| | Sample_contact_phone | +39 02 574303703
| | Sample_contact_department | Microarray and NGS Unit
| | Sample_contact_institute | Cogentech
| | Sample_contact_address | Via Adamello
| | Sample_contact_city | Milano
| | Sample_contact_state | Italy
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702266/suppl/GSM702266.CEL.gz
| | Sample_series_id | GSE28417
| | Sample_series_id | GSE28418
| | Sample_data_row_count | 45101
| | |
|
GSM702267 | GPL1261 |
|
Thymus_p53KO
|
Thymus p53 knock-out (p53-/-)
|
age: 2 months old
strain: Sv/129
tissue: thymus
genotype: p53 knock-out (p53-/-)
|
pool of RNA (4 mice)
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| Sample_geo_accession | GSM702267
| | Sample_status | Public on Apr 02 2012
| | Sample_submission_date | Apr 06 2011
| | Sample_last_update_date | Apr 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Total RNA was extracted from freshly isolated thymus, liver, heart and lung of two months old mice (pool of four mice for each genotype)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to Affymetrix OneCycle amplification protocol from 3000 ng total RNA, and labeled using the IVT Labeling Kit
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430 2.0 array. GeneChip arrays were washed and stained in the Affymetrix Fluidic Station 450.
| | Sample_scan_protocol | GeneChip array images were scanned using the Affymetrix GeneChip Scanner 30007G instrument.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite v 6.5 using RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Simone ,Paolo,Minardi
| | Sample_contact_email | simone.minardi@ifom-ieo-campus.it
| | Sample_contact_phone | +39 02 574303703
| | Sample_contact_department | Microarray and NGS Unit
| | Sample_contact_institute | Cogentech
| | Sample_contact_address | Via Adamello
| | Sample_contact_city | Milano
| | Sample_contact_state | Italy
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM702nnn/GSM702267/suppl/GSM702267.CEL.gz
| | Sample_series_id | GSE28417
| | Sample_series_id | GSE28418
| | Sample_data_row_count | 45101
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