Search results for the GEO ID: GSE28442  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM703095 | GPL570 |
|
15_D
|
lymph node
|
status: metastatic
Sex: female
|
|
| Sample_geo_accession | GSM703095
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Apr 07 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the RNeasy Plus Mini Kit (cat. 74134) according to Qiagen's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard one-cycle Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual With Specific Protocols for Using the GeneChip® Hybridization, Wash, and Stain Kit, 2005-2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed (Fluidics Scripts FS450_001) and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner.
| | Sample_data_processing | Cell intensity files were generated using GCOS (Affymetrix). The probe set data was generated using R/BioConductor (version 2.12.0) packages affy (version 1.28.0), gcrma (version 2.22.0).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Krzysztof,,Goryca
| | Sample_contact_institute | Centrum Onkologii Instytut im. Marii Skłodowskiej Curie
| | Sample_contact_address | Roentgena 5
| | Sample_contact_city | Warszawa
| | Sample_contact_zip/postal_code | 02-781
| | Sample_contact_country | Poland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM703nnn/GSM703095/suppl/GSM703095.CEL.gz
| | Sample_series_id | GSE28442
| | Sample_data_row_count | 54675
| | |
|
GSM703096 | GPL570 |
|
15_E
|
lymph node
|
status: negative
Sex: female
|
|
| Sample_geo_accession | GSM703096
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Apr 07 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the RNeasy Plus Mini Kit (cat. 74134) according to Qiagen's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard one-cycle Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual With Specific Protocols for Using the GeneChip® Hybridization, Wash, and Stain Kit, 2005-2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed (Fluidics Scripts FS450_001) and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner.
| | Sample_data_processing | Cell intensity files were generated using GCOS (Affymetrix). The probe set data was generated using R/BioConductor (version 2.12.0) packages affy (version 1.28.0), gcrma (version 2.22.0).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Krzysztof,,Goryca
| | Sample_contact_institute | Centrum Onkologii Instytut im. Marii Skłodowskiej Curie
| | Sample_contact_address | Roentgena 5
| | Sample_contact_city | Warszawa
| | Sample_contact_zip/postal_code | 02-781
| | Sample_contact_country | Poland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM703nnn/GSM703096/suppl/GSM703096.CEL.gz
| | Sample_series_id | GSE28442
| | Sample_data_row_count | 54675
| | |
|
GSM703097 | GPL570 |
|
21_D
|
lymph node
|
status: negative
Sex: female
|
|
| Sample_geo_accession | GSM703097
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Apr 07 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the RNeasy Plus Mini Kit (cat. 74134) according to Qiagen's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard one-cycle Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual With Specific Protocols for Using the GeneChip® Hybridization, Wash, and Stain Kit, 2005-2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed (Fluidics Scripts FS450_001) and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner.
| | Sample_data_processing | Cell intensity files were generated using GCOS (Affymetrix). The probe set data was generated using R/BioConductor (version 2.12.0) packages affy (version 1.28.0), gcrma (version 2.22.0).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Krzysztof,,Goryca
| | Sample_contact_institute | Centrum Onkologii Instytut im. Marii Skłodowskiej Curie
| | Sample_contact_address | Roentgena 5
| | Sample_contact_city | Warszawa
| | Sample_contact_zip/postal_code | 02-781
| | Sample_contact_country | Poland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM703nnn/GSM703097/suppl/GSM703097.CEL.gz
| | Sample_series_id | GSE28442
| | Sample_data_row_count | 54675
| | |
|
GSM703098 | GPL570 |
|
21_E
|
lymph node
|
status: metastatic
Sex: female
|
|
| Sample_geo_accession | GSM703098
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Apr 07 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the RNeasy Plus Mini Kit (cat. 74134) according to Qiagen's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard one-cycle Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual With Specific Protocols for Using the GeneChip® Hybridization, Wash, and Stain Kit, 2005-2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed (Fluidics Scripts FS450_001) and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner.
| | Sample_data_processing | Cell intensity files were generated using GCOS (Affymetrix). The probe set data was generated using R/BioConductor (version 2.12.0) packages affy (version 1.28.0), gcrma (version 2.22.0).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Krzysztof,,Goryca
| | Sample_contact_institute | Centrum Onkologii Instytut im. Marii Skłodowskiej Curie
| | Sample_contact_address | Roentgena 5
| | Sample_contact_city | Warszawa
| | Sample_contact_zip/postal_code | 02-781
| | Sample_contact_country | Poland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM703nnn/GSM703098/suppl/GSM703098.CEL.gz
| | Sample_series_id | GSE28442
| | Sample_data_row_count | 54675
| | |
|
GSM703099 | GPL570 |
|
46_B
|
lymph node
|
status: metastatic
Sex: female
|
|
| Sample_geo_accession | GSM703099
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Apr 07 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the RNeasy Plus Mini Kit (cat. 74134) according to Qiagen's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard one-cycle Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual With Specific Protocols for Using the GeneChip® Hybridization, Wash, and Stain Kit, 2005-2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed (Fluidics Scripts FS450_001) and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner.
| | Sample_data_processing | Cell intensity files were generated using GCOS (Affymetrix). The probe set data was generated using R/BioConductor (version 2.12.0) packages affy (version 1.28.0), gcrma (version 2.22.0).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Krzysztof,,Goryca
| | Sample_contact_institute | Centrum Onkologii Instytut im. Marii Skłodowskiej Curie
| | Sample_contact_address | Roentgena 5
| | Sample_contact_city | Warszawa
| | Sample_contact_zip/postal_code | 02-781
| | Sample_contact_country | Poland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM703nnn/GSM703099/suppl/GSM703099.CEL.gz
| | Sample_series_id | GSE28442
| | Sample_data_row_count | 54675
| | |
|
GSM703100 | GPL570 |
|
46_D
|
lymph node
|
status: negative
Sex: female
|
|
| Sample_geo_accession | GSM703100
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Apr 07 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the RNeasy Plus Mini Kit (cat. 74134) according to Qiagen's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard one-cycle Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual With Specific Protocols for Using the GeneChip® Hybridization, Wash, and Stain Kit, 2005-2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed (Fluidics Scripts FS450_001) and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner.
| | Sample_data_processing | Cell intensity files were generated using GCOS (Affymetrix). The probe set data was generated using R/BioConductor (version 2.12.0) packages affy (version 1.28.0), gcrma (version 2.22.0).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Krzysztof,,Goryca
| | Sample_contact_institute | Centrum Onkologii Instytut im. Marii Skłodowskiej Curie
| | Sample_contact_address | Roentgena 5
| | Sample_contact_city | Warszawa
| | Sample_contact_zip/postal_code | 02-781
| | Sample_contact_country | Poland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM703nnn/GSM703100/suppl/GSM703100.CEL.gz
| | Sample_series_id | GSE28442
| | Sample_data_row_count | 54675
| | |
|
GSM703101 | GPL570 |
|
61_B
|
lymph node
|
status: metastatic
Sex: female
|
|
| Sample_geo_accession | GSM703101
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Apr 07 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the RNeasy Plus Mini Kit (cat. 74134) according to Qiagen's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard one-cycle Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual With Specific Protocols for Using the GeneChip® Hybridization, Wash, and Stain Kit, 2005-2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed (Fluidics Scripts FS450_001) and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner.
| | Sample_data_processing | Cell intensity files were generated using GCOS (Affymetrix). The probe set data was generated using R/BioConductor (version 2.12.0) packages affy (version 1.28.0), gcrma (version 2.22.0).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Krzysztof,,Goryca
| | Sample_contact_institute | Centrum Onkologii Instytut im. Marii Skłodowskiej Curie
| | Sample_contact_address | Roentgena 5
| | Sample_contact_city | Warszawa
| | Sample_contact_zip/postal_code | 02-781
| | Sample_contact_country | Poland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM703nnn/GSM703101/suppl/GSM703101.CEL.gz
| | Sample_series_id | GSE28442
| | Sample_data_row_count | 54675
| | |
|
GSM703102 | GPL570 |
|
61_D
|
lymph node
|
status: negative
Sex: female
|
|
| Sample_geo_accession | GSM703102
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Apr 07 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the RNeasy Plus Mini Kit (cat. 74134) according to Qiagen's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard one-cycle Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual With Specific Protocols for Using the GeneChip® Hybridization, Wash, and Stain Kit, 2005-2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed (Fluidics Scripts FS450_001) and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner.
| | Sample_data_processing | Cell intensity files were generated using GCOS (Affymetrix). The probe set data was generated using R/BioConductor (version 2.12.0) packages affy (version 1.28.0), gcrma (version 2.22.0).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Krzysztof,,Goryca
| | Sample_contact_institute | Centrum Onkologii Instytut im. Marii Skłodowskiej Curie
| | Sample_contact_address | Roentgena 5
| | Sample_contact_city | Warszawa
| | Sample_contact_zip/postal_code | 02-781
| | Sample_contact_country | Poland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM703nnn/GSM703102/suppl/GSM703102.CEL.gz
| | Sample_series_id | GSE28442
| | Sample_data_row_count | 54675
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