Search results for the GEO ID: GSE28504  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM706168 | GPL570 |
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trophectoderm TE_D2E2
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Human mural trophectoderm_D2E2
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tissue: mural trophectoderm
|
Human mural trophectoderm was mechanically separated from 5 days blastocyst and lysed for RNA extraction.
|
| Sample_geo_accession | GSM706168
| | Sample_status | Public on Jul 15 2011
| | Sample_submission_date | Apr 09 2011
| | Sample_last_update_date | Oct 18 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol ‘small sample protocol II’, starting from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Qiang,,BAI
| | Sample_contact_email | qiang.bai@inserm.fr
| | Sample_contact_phone | +33 467330688
| | Sample_contact_institute | INSERM U1040
| | Sample_contact_address | 80, av. Augustin Fliche
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34295
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM706nnn/GSM706168/suppl/GSM706168_2009D2E2__HG_U133_Plus_2__2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM706nnn/GSM706168/suppl/GSM706168_2009D2E2__HG_U133_Plus_2__2.mas5.CHP.gz
| | Sample_relation | Reanalyzed by: GSE33025
| | Sample_series_id | GSE28504
| | Sample_data_row_count | 54675
| | |
|
GSM706169 | GPL570 |
|
trophectoderm TE_D2E5
|
Human mural trophectoderm_D2E5
|
tissue: mural trophectoderm
|
Human mural trophectoderm was mechanically separated from 5 days blastocyst and lysed for RNA extraction.
|
| Sample_geo_accession | GSM706169
| | Sample_status | Public on Jul 15 2011
| | Sample_submission_date | Apr 09 2011
| | Sample_last_update_date | Oct 18 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol ‘small sample protocol II’, starting from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Qiang,,BAI
| | Sample_contact_email | qiang.bai@inserm.fr
| | Sample_contact_phone | +33 467330688
| | Sample_contact_institute | INSERM U1040
| | Sample_contact_address | 80, av. Augustin Fliche
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34295
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM706nnn/GSM706169/suppl/GSM706169_2009D2E5__HG_U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM706nnn/GSM706169/suppl/GSM706169_2009D2E5__HG_U133_Plus_2_.mas5.CHP.gz
| | Sample_relation | Reanalyzed by: GSE33025
| | Sample_series_id | GSE28504
| | Sample_data_row_count | 54675
| | |
|
GSM706170 | GPL570 |
|
trophectoderm TE_D2E6
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Human mural trophectoderm_D2E6
|
tissue: mural trophectoderm
|
Human mural trophectoderm was mechanically separated from 5 days blastocyst and lysed for RNA extraction.
|
| Sample_geo_accession | GSM706170
| | Sample_status | Public on Jul 15 2011
| | Sample_submission_date | Apr 09 2011
| | Sample_last_update_date | Oct 18 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol ‘small sample protocol II’, starting from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Qiang,,BAI
| | Sample_contact_email | qiang.bai@inserm.fr
| | Sample_contact_phone | +33 467330688
| | Sample_contact_institute | INSERM U1040
| | Sample_contact_address | 80, av. Augustin Fliche
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34295
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM706nnn/GSM706170/suppl/GSM706170_2009D2E6__HG_U133_Plus_2__2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM706nnn/GSM706170/suppl/GSM706170_2009D2E6__HG_U133_Plus_2__2.mas5.CHP.gz
| | Sample_relation | Reanalyzed by: GSE33025
| | Sample_series_id | GSE28504
| | Sample_data_row_count | 54675
| | |
|
GSM706171 | GPL570 |
|
trophectoderm TE_5
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Human mural trophectoderm_tropho_5
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tissue: mural trophectoderm
|
Human mural trophectoderm was mechanically separated from 5 days blastocyst and lysed for RNA extraction.
|
| Sample_geo_accession | GSM706171
| | Sample_status | Public on Jul 15 2011
| | Sample_submission_date | Apr 09 2011
| | Sample_last_update_date | Oct 18 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol ‘small sample protocol II’, starting from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Qiang,,BAI
| | Sample_contact_email | qiang.bai@inserm.fr
| | Sample_contact_phone | +33 467330688
| | Sample_contact_institute | INSERM U1040
| | Sample_contact_address | 80, av. Augustin Fliche
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34295
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM706nnn/GSM706171/suppl/GSM706171_20091113_Tropho_5__HG_U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM706nnn/GSM706171/suppl/GSM706171_20091113_Tropho_5__HG_U133_Plus_2_.mas5.CHP.gz
| | Sample_relation | Reanalyzed by: GSE33025
| | Sample_series_id | GSE28504
| | Sample_data_row_count | 54675
| | |
|
GSM706172 | GPL570 |
|
trophectoderm TE_7
|
Human mural trophectoderm_tropho_7
|
tissue: mural trophectoderm
|
Human mural trophectoderm was mechanically separated from 5 days blastocyst and lysed for RNA extraction.
|
| Sample_geo_accession | GSM706172
| | Sample_status | Public on Jul 15 2011
| | Sample_submission_date | Apr 09 2011
| | Sample_last_update_date | Oct 18 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol ‘small sample protocol II’, starting from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Qiang,,BAI
| | Sample_contact_email | qiang.bai@inserm.fr
| | Sample_contact_phone | +33 467330688
| | Sample_contact_institute | INSERM U1040
| | Sample_contact_address | 80, av. Augustin Fliche
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34295
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM706nnn/GSM706172/suppl/GSM706172_20091113_Tropho_7__HG_U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM706nnn/GSM706172/suppl/GSM706172_20091113_Tropho_7__HG_U133_Plus_2_.mas5.CHP.gz
| | Sample_relation | Reanalyzed by: GSE33025
| | Sample_series_id | GSE28504
| | Sample_data_row_count | 54675
| | |
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