Search results for the GEO ID: GSE28619  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM709348 | GPL570 |
|
Liver sample from Control group (N52)
|
liver biopsy sample
|
liver sample group: : Control
|
Liver sample from Control group
|
| Sample_geo_accession | GSM709348
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709348/suppl/GSM709348.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709349 | GPL570 |
|
Liver sample from Control group (C9)
|
liver biopsy sample
|
liver sample group: : Control
|
Liver sample from Control group
|
| Sample_geo_accession | GSM709349
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709349/suppl/GSM709349.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709350 | GPL570 |
|
Liver sample from Control group (C7)
|
liver biopsy sample
|
liver sample group: : Control
|
Liver sample from Control group
|
| Sample_geo_accession | GSM709350
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709350/suppl/GSM709350.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709351 | GPL570 |
|
Liver sample from Control group (C12)
|
liver biopsy sample
|
liver sample group: : Control
|
Liver sample from Control group
|
| Sample_geo_accession | GSM709351
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709351/suppl/GSM709351.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709352 | GPL570 |
|
Liver sample from Control group (N54)
|
liver biopsy sample
|
liver sample group: : Control
|
Liver sample from Control group
|
| Sample_geo_accession | GSM709352
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709352/suppl/GSM709352.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709353 | GPL570 |
|
Liver sample from Control group (N17)
|
liver biopsy sample
|
liver sample group: : Control
|
Liver sample from Control group
|
| Sample_geo_accession | GSM709353
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709353/suppl/GSM709353.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709354 | GPL570 |
|
Liver sample from Control group (N53)
|
liver biopsy sample
|
liver sample group: : Control
|
Liver sample from Control group
|
| Sample_geo_accession | GSM709354
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709354/suppl/GSM709354.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709355 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA64)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709355
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709355/suppl/GSM709355.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709356 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA45)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709356
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709356/suppl/GSM709356.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709357 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA62)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709357
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709357/suppl/GSM709357.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709358 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA51)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709358
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709358/suppl/GSM709358.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709359 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA79)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709359
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709359/suppl/GSM709359.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709360 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA92)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709360
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709360/suppl/GSM709360.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709361 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA47)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709361
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709361/suppl/GSM709361.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709362 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA20)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709362
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709362/suppl/GSM709362.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709363 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA22)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709363
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709363/suppl/GSM709363.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709364 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA82)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709364
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709364/suppl/GSM709364.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709365 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA39)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709365
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709365/suppl/GSM709365.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709366 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA80)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709366
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709366/suppl/GSM709366.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709367 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA28)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709367
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709367/suppl/GSM709367.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709368 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA77)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709368
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709368/suppl/GSM709368.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
GSM709369 | GPL570 |
|
Liver sample from Alcoholic hepatitis group (CA5)
|
liver biopsy sample
|
liver sample group: : Alcoholic hepatitis
|
Liver sample from Alcoholic hepatitis group
|
| Sample_geo_accession | GSM709369
| | Sample_status | Public on Jun 15 2012
| | Sample_submission_date | Apr 14 2011
| | Sample_last_update_date | Jun 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM709nnn/GSM709369/suppl/GSM709369.CEL.gz
| | Sample_series_id | GSE28619
| | Sample_data_row_count | 54675
| | |
|
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| |
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