Search results for the GEO ID: GSE28724  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM711694 | GPL570 |
|
A1847
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: A1847
|
|
| Sample_geo_accession | GSM711694
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711694/suppl/GSM711694_AFG1127-1.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711695 | GPL570 |
|
JHOS-2
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: JHOS-2
|
|
| Sample_geo_accession | GSM711695
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711695/suppl/GSM711695_AFG1127-15.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711696 | GPL570 |
|
OAW28
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OAW28
|
|
| Sample_geo_accession | GSM711696
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711696/suppl/GSM711696_AFG1127-22.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711697 | GPL570 |
|
OAW42
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OAW42
|
|
| Sample_geo_accession | GSM711697
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711697/suppl/GSM711697_AFG1127-23.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711698 | GPL570 |
|
OV-7
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OV-7
|
|
| Sample_geo_accession | GSM711698
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711698/suppl/GSM711698_AFG1127-25.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711699 | GPL570 |
|
OV-17R
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OV-17R
|
|
| Sample_geo_accession | GSM711699
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711699/suppl/GSM711699_AFG1127-26.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711700 | GPL570 |
|
OV-56
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OV-56
|
|
| Sample_geo_accession | GSM711700
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711700/suppl/GSM711700_AFG1127-28.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711701 | GPL570 |
|
Caov-2
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: Caov-2
|
|
| Sample_geo_accession | GSM711701
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711701/suppl/GSM711701_AFG1127-3.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711702 | GPL570 |
|
OV-90
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OV-90
|
|
| Sample_geo_accession | GSM711702
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711702/suppl/GSM711702_AFG1127-30.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711703 | GPL570 |
|
OVCA420
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OVCA420
|
|
| Sample_geo_accession | GSM711703
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711703/suppl/GSM711703_AFG1127-33.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711704 | GPL570 |
|
OVCA429
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OVCA429
|
|
| Sample_geo_accession | GSM711704
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711704/suppl/GSM711704_AFG1127-34.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711705 | GPL570 |
|
OVCA432
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OVCA432
|
|
| Sample_geo_accession | GSM711705
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711705/suppl/GSM711705_AFG1127-36.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711706 | GPL570 |
|
OVCA433
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OVCA433
|
|
| Sample_geo_accession | GSM711706
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711706/suppl/GSM711706_AFG1127-38.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711707 | GPL570 |
|
OVCAR-2
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OVCAR-2
|
|
| Sample_geo_accession | GSM711707
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711707/suppl/GSM711707_AFG1127-40.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711708 | GPL570 |
|
OVCAR-3
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OVCAR-3
|
|
| Sample_geo_accession | GSM711708
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711708/suppl/GSM711708_AFG1127-42.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711709 | GPL570 |
|
OVCAR-5
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OVCAR-5
|
|
| Sample_geo_accession | GSM711709
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711709/suppl/GSM711709_AFG1127-44.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711710 | GPL570 |
|
OVCAR-8
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OVCAR-8
|
|
| Sample_geo_accession | GSM711710
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711710/suppl/GSM711710_AFG1127-46.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711711 | GPL570 |
|
OVCAR-10
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OVCAR-10
|
|
| Sample_geo_accession | GSM711711
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711711/suppl/GSM711711_AFG1127-48.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711712 | GPL570 |
|
Caov-3
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: Caov-3
|
|
| Sample_geo_accession | GSM711712
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711712/suppl/GSM711712_AFG1127-5.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711713 | GPL570 |
|
SKOV-3
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: SKOV-3
|
|
| Sample_geo_accession | GSM711713
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711713/suppl/GSM711713_AFG1127-50.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711714 | GPL570 |
|
UWB1.289
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: UWB1.289
|
|
| Sample_geo_accession | GSM711714
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711714/suppl/GSM711714_AFG1127-52.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711715 | GPL570 |
|
A2008
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: A2008
|
|
| Sample_geo_accession | GSM711715
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711715/suppl/GSM711715_AFG1127-54.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711716 | GPL570 |
|
EFO-21
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: EFO-21
|
|
| Sample_geo_accession | GSM711716
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711716/suppl/GSM711716_AFG1127-7.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711717 | GPL570 |
|
C13
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: C13
|
|
| Sample_geo_accession | GSM711717
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711717/suppl/GSM711717_AFG1127-57.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711718 | GPL570 |
|
OV2008
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: OV2008
|
|
| Sample_geo_accession | GSM711718
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711718/suppl/GSM711718_AFG1127-58.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711719 | GPL570 |
|
FUOV-1
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: FUOV-1
|
|
| Sample_geo_accession | GSM711719
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711719/suppl/GSM711719_AFG1127-60.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711721 | GPL570 |
|
TOV112D
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: TOV112D
|
|
| Sample_geo_accession | GSM711721
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711721/suppl/GSM711721_AFG1127-66.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711722 | GPL570 |
|
A2780
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: A2780
|
|
| Sample_geo_accession | GSM711722
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711722/suppl/GSM711722_AFG1127-68.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711723 | GPL570 |
|
CH1
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: CH1
|
|
| Sample_geo_accession | GSM711723
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711723/suppl/GSM711723_AFG1127-72.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711724 | GPL570 |
|
DOV13
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: DOV13
|
|
| Sample_geo_accession | GSM711724
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711724/suppl/GSM711724_AFG1127-74.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711725 | GPL570 |
|
Tyk-nu
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: Tyk-nu
|
|
| Sample_geo_accession | GSM711725
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711725/suppl/GSM711725_AFG1127-76.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711726 | GPL570 |
|
PEO1
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: PEO1
|
|
| Sample_geo_accession | GSM711726
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711726/suppl/GSM711726_AFG1127-78.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
GSM711727 | GPL570 |
|
COLO720E
|
Cultured ovarian cancer cell line
|
cell type: cultured ovarian carcinoma
cell line: COLO720E
|
|
| Sample_geo_accession | GSM711727
| | Sample_status | Public on May 21 2013
| | Sample_submission_date | Apr 19 2011
| | Sample_last_update_date | May 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNEasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized by Robust Multichip Average (RMA) using R with Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tuan Zea,,Tan
| | Sample_contact_email | csittz@nus.edu.sg
| | Sample_contact_department | Cancer Science Institute Singapore
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 14 Medical Drive, #11-01, Singapore
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117599
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711727/suppl/GSM711727_AFG1127-82.CEL.gz
| | Sample_series_id | GSE28724
| | Sample_data_row_count | 54675
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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