Search results for the GEO ID: GSE28736 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM711994 | GPL1261 |
|
batf KO B cells unacivated
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mRNA from B cells
|
cell type: B cell
|
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Sample_geo_accession | GSM711994
| Sample_status | Public on May 15 2011
| Sample_submission_date | Apr 20 2011
| Sample_last_update_date | May 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | treatment with or without LPS
| Sample_growth_protocol_ch1 | standard tissue culture Iscoves media plus LPS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard affymetrix
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard affymetrix protocol
| Sample_hyb_protocol | standard affymetrix protocol
| Sample_scan_protocol | standard affymetrix protocol
| Sample_data_processing | standard affymetrix protocol
| Sample_platform_id | GPL1261
| Sample_contact_name | Kenneth,M,Murphy
| Sample_contact_email | kmurphy@wustl.edu
| Sample_contact_institute | HHMI
| Sample_contact_address | 660 S. Euclid
| Sample_contact_city | St. Louis
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711994/suppl/GSM711994.CEL.gz
| Sample_series_id | GSE28736
| Sample_data_row_count | 0
| |
|
GSM711995 | GPL1261 |
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batf KO B cells treated with LPS for 1 day
|
mRNA from B cells
|
cell type: B cell
|
|
Sample_geo_accession | GSM711995
| Sample_status | Public on May 15 2011
| Sample_submission_date | Apr 20 2011
| Sample_last_update_date | May 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | treatment with or without LPS
| Sample_growth_protocol_ch1 | standard tissue culture Iscoves media plus LPS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard affymetrix
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard affymetrix protocol
| Sample_hyb_protocol | standard affymetrix protocol
| Sample_scan_protocol | standard affymetrix protocol
| Sample_data_processing | standard affymetrix protocol
| Sample_platform_id | GPL1261
| Sample_contact_name | Kenneth,M,Murphy
| Sample_contact_email | kmurphy@wustl.edu
| Sample_contact_institute | HHMI
| Sample_contact_address | 660 S. Euclid
| Sample_contact_city | St. Louis
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711995/suppl/GSM711995.CEL.gz
| Sample_series_id | GSE28736
| Sample_data_row_count | 0
| |
|
GSM711996 | GPL1261 |
|
batf KO B cells treated with LPS for 2 days
|
mRNA from B cells
|
cell type: B cell
|
|
Sample_geo_accession | GSM711996
| Sample_status | Public on May 15 2011
| Sample_submission_date | Apr 20 2011
| Sample_last_update_date | May 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | treatment with or without LPS
| Sample_growth_protocol_ch1 | standard tissue culture Iscoves media plus LPS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard affymetrix
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard affymetrix protocol
| Sample_hyb_protocol | standard affymetrix protocol
| Sample_scan_protocol | standard affymetrix protocol
| Sample_data_processing | standard affymetrix protocol
| Sample_platform_id | GPL1261
| Sample_contact_name | Kenneth,M,Murphy
| Sample_contact_email | kmurphy@wustl.edu
| Sample_contact_institute | HHMI
| Sample_contact_address | 660 S. Euclid
| Sample_contact_city | St. Louis
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711996/suppl/GSM711996.CEL.gz
| Sample_series_id | GSE28736
| Sample_data_row_count | 0
| |
|
GSM711997 | GPL1261 |
|
wild type B cells unactivated
|
mRNA from B cells
|
cell type: B cell
|
|
Sample_geo_accession | GSM711997
| Sample_status | Public on May 15 2011
| Sample_submission_date | Apr 20 2011
| Sample_last_update_date | May 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | treatment with or without LPS
| Sample_growth_protocol_ch1 | standard tissue culture Iscoves media plus LPS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard affymetrix
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard affymetrix protocol
| Sample_hyb_protocol | standard affymetrix protocol
| Sample_scan_protocol | standard affymetrix protocol
| Sample_data_processing | standard affymetrix protocol
| Sample_platform_id | GPL1261
| Sample_contact_name | Kenneth,M,Murphy
| Sample_contact_email | kmurphy@wustl.edu
| Sample_contact_institute | HHMI
| Sample_contact_address | 660 S. Euclid
| Sample_contact_city | St. Louis
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711997/suppl/GSM711997.CEL.gz
| Sample_series_id | GSE28736
| Sample_data_row_count | 0
| |
|
GSM711998 | GPL1261 |
|
wild type B cells treated with LPS for 1 day
|
mRNA from B cells
|
cell type: B cell
|
|
Sample_geo_accession | GSM711998
| Sample_status | Public on May 15 2011
| Sample_submission_date | Apr 20 2011
| Sample_last_update_date | May 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | treatment with or without LPS
| Sample_growth_protocol_ch1 | standard tissue culture Iscoves media plus LPS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard affymetrix
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard affymetrix protocol
| Sample_hyb_protocol | standard affymetrix protocol
| Sample_scan_protocol | standard affymetrix protocol
| Sample_data_processing | standard affymetrix protocol
| Sample_platform_id | GPL1261
| Sample_contact_name | Kenneth,M,Murphy
| Sample_contact_email | kmurphy@wustl.edu
| Sample_contact_institute | HHMI
| Sample_contact_address | 660 S. Euclid
| Sample_contact_city | St. Louis
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711998/suppl/GSM711998.CEL.gz
| Sample_series_id | GSE28736
| Sample_data_row_count | 0
| |
|
GSM711999 | GPL1261 |
|
wild type B cells treated with LPS for 2 days
|
mRNA from B cells
|
cell type: B cell
|
|
Sample_geo_accession | GSM711999
| Sample_status | Public on May 15 2011
| Sample_submission_date | Apr 20 2011
| Sample_last_update_date | May 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | treatment with or without LPS
| Sample_growth_protocol_ch1 | standard tissue culture Iscoves media plus LPS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard affymetrix
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard affymetrix protocol
| Sample_hyb_protocol | standard affymetrix protocol
| Sample_scan_protocol | standard affymetrix protocol
| Sample_data_processing | standard affymetrix protocol
| Sample_platform_id | GPL1261
| Sample_contact_name | Kenneth,M,Murphy
| Sample_contact_email | kmurphy@wustl.edu
| Sample_contact_institute | HHMI
| Sample_contact_address | 660 S. Euclid
| Sample_contact_city | St. Louis
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM711nnn/GSM711999/suppl/GSM711999.CEL.gz
| Sample_series_id | GSE28736
| Sample_data_row_count | 0
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Select expression type |
Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
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Regulation type |
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Fold change |
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p-value |
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B. Absolute calls (Transcribed/Not-detected) |
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Derive calls within/across groups |
Within groups |
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Detection status |
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Percentage detection |
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Across groups |
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Detection status |
First group: |
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Second group:
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Percentage detection |
First group: |
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Second group:
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Filter results by number of probes |
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