Search results for the GEO ID: GSE28750  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM712478 | GPL570 |
|
Experiment_Sepsis_1
|
Whole blood
|
tissue: whole blood
health status: SEPSIS
|
Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Culture
|
| Sample_geo_accession | GSM712478
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712478/suppl/GSM712478_af1c1302-1-zm-1-tubea-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712478/suppl/GSM712478_af1c1302-1-zm-1-tubea-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712479 | GPL570 |
|
Experiment_Sepsis_2
|
Whole blood
|
tissue: whole blood
health status: SEPSIS
|
Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Culture
|
| Sample_geo_accession | GSM712479
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712479/suppl/GSM712479_af1c1302-10-pd-1-tubea-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712479/suppl/GSM712479_af1c1302-10-pd-1-tubea-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712480 | GPL570 |
|
Experiment_Sepsis_3
|
Whole blood
|
tissue: whole blood
health status: SEPSIS
|
Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Culture
|
| Sample_geo_accession | GSM712480
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712480/suppl/GSM712480_af1c1302-11-br-1-tubea-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712480/suppl/GSM712480_af1c1302-11-br-1-tubea-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712481 | GPL570 |
|
Experiment_Sepsis_4
|
Whole blood
|
tissue: whole blood
health status: SEPSIS
|
Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Culture
|
| Sample_geo_accession | GSM712481
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712481/suppl/GSM712481_af1c1302-2-tw-1-tubeb-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712481/suppl/GSM712481_af1c1302-2-tw-1-tubeb-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712482 | GPL570 |
|
Experiment_Sepsis_5
|
Whole blood
|
tissue: whole blood
health status: SEPSIS
|
Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Culture
|
| Sample_geo_accession | GSM712482
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712482/suppl/GSM712482_af1c1302-3-kc-1-replacement-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712482/suppl/GSM712482_af1c1302-3-kc-1-replacement-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712483 | GPL570 |
|
Experiment_Sepsis_6
|
Whole blood
|
tissue: whole blood
health status: SEPSIS
|
Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Culture
|
| Sample_geo_accession | GSM712483
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712483/suppl/GSM712483_af1c1302-5-jb-1-replacement-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712483/suppl/GSM712483_af1c1302-5-jb-1-replacement-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712484 | GPL570 |
|
Experiment_Sepsis_7
|
Whole blood
|
tissue: whole blood
health status: SEPSIS
|
Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Culture
|
| Sample_geo_accession | GSM712484
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712484/suppl/GSM712484_af1c1302-6-tw-2-tubeb-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712484/suppl/GSM712484_af1c1302-6-tw-2-tubeb-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712485 | GPL570 |
|
Experiment_Sepsis_8
|
Whole blood
|
tissue: whole blood
health status: SEPSIS
|
Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Culture
|
| Sample_geo_accession | GSM712485
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712485/suppl/GSM712485_af1c1302-7-pg-1-tubea_b-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712485/suppl/GSM712485_af1c1302-7-pg-1-tubea_b-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712486 | GPL570 |
|
Experiment_Sepsis_9
|
Whole blood
|
tissue: whole blood
health status: SEPSIS
|
Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Culture
|
| Sample_geo_accession | GSM712486
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712486/suppl/GSM712486_af1c1302-8-ed-1-replacement-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712486/suppl/GSM712486_af1c1302-8-ed-1-replacement-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712487 | GPL570 |
|
Experiment_Sepsis_10
|
Whole blood
|
tissue: whole blood
health status: SEPSIS
|
Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Culture
|
| Sample_geo_accession | GSM712487
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712487/suppl/GSM712487_af1c1302-9-ds-1-tubea-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712487/suppl/GSM712487_af1c1302-9-ds-1-tubea-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712488 | GPL570 |
|
Control_Healthy_1
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712488
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712488/suppl/GSM712488_af1c1302-13-female-1-tubea-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712488/suppl/GSM712488_af1c1302-13-female-1-tubea-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712489 | GPL570 |
|
Control_Healthy_2
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712489
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712489/suppl/GSM712489_af1c1302-14-female-2-tubea-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712489/suppl/GSM712489_af1c1302-14-female-2-tubea-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712490 | GPL570 |
|
Control_Healthy_3
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712490
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712490/suppl/GSM712490_af1c1302-15-female-3-tubea-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712490/suppl/GSM712490_af1c1302-15-female-3-tubea-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712491 | GPL570 |
|
Control_Healthy_4
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712491
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712491/suppl/GSM712491_af1c1302-16-female-4-tubea-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712491/suppl/GSM712491_af1c1302-16-female-4-tubea-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712492 | GPL570 |
|
Control_Healthy_5
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712492
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712492/suppl/GSM712492_af1c1302-17-female-5-tubeb-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712492/suppl/GSM712492_af1c1302-17-female-5-tubeb-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712493 | GPL570 |
|
Control_Healthy_6
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712493
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712493/suppl/GSM712493_af1c1302-18-female-6-replacement-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712493/suppl/GSM712493_af1c1302-18-female-6-replacement-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712494 | GPL570 |
|
Control_Healthy_7
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712494
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712494/suppl/GSM712494_af1c1302-19-female-7-tubea-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712494/suppl/GSM712494_af1c1302-19-female-7-tubea-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712495 | GPL570 |
|
Control_Healthy_8
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712495
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712495/suppl/GSM712495_af1c1302-20-female-8-replacement-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712495/suppl/GSM712495_af1c1302-20-female-8-replacement-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712496 | GPL570 |
|
Control_Healthy_9
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712496
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712496/suppl/GSM712496_af1c1302-21-female-9-tubeb-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712496/suppl/GSM712496_af1c1302-21-female-9-tubeb-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712497 | GPL570 |
|
Control_Healthy_10
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712497
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712497/suppl/GSM712497_af1c1302-22-female-10-replacement-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712497/suppl/GSM712497_af1c1302-22-female-10-replacement-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712498 | GPL570 |
|
Control_Healthy_11
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712498
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712498/suppl/GSM712498_af1c1302-23-male-1-tubea-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712498/suppl/GSM712498_af1c1302-23-male-1-tubea-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712499 | GPL570 |
|
Control_Healthy_12
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712499
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712499/suppl/GSM712499_af1c1302-24-male-2-tubeb-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712499/suppl/GSM712499_af1c1302-24-male-2-tubeb-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712500 | GPL570 |
|
Control_Healthy_13
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712500
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712500/suppl/GSM712500_af1c1302-25-male-3-tubea-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712500/suppl/GSM712500_af1c1302-25-male-3-tubea-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712501 | GPL570 |
|
Control_Healthy_14
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712501
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712501/suppl/GSM712501_af1c1302-26-male-4-tubeb-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712501/suppl/GSM712501_af1c1302-26-male-4-tubeb-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712502 | GPL570 |
|
Control_Healthy_15
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712502
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712502/suppl/GSM712502_af1c1302-27-male-5-tubea-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712502/suppl/GSM712502_af1c1302-27-male-5-tubea-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712503 | GPL570 |
|
Control_Healthy_16
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712503
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712503/suppl/GSM712503_af1c1302-28-male-6-tubeb-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712503/suppl/GSM712503_af1c1302-28-male-6-tubeb-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712504 | GPL570 |
|
Control_Healthy_17
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712504
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712504/suppl/GSM712504_af1c1302-29-male-7-tubea-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712504/suppl/GSM712504_af1c1302-29-male-7-tubea-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712505 | GPL570 |
|
Control_Healthy_18
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712505
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712505/suppl/GSM712505_af1c1302-30-male-8-tubea-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712505/suppl/GSM712505_af1c1302-30-male-8-tubea-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712506 | GPL570 |
|
Control_Healthy_19
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712506
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712506/suppl/GSM712506_af1c1302-31-male-9-tubeb-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712506/suppl/GSM712506_af1c1302-31-male-9-tubeb-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712507 | GPL570 |
|
Control_Healthy_20
|
Whole blood
|
tissue: whole blood
health status: HEALTHY
|
No concurrent illnesses, No past history of immunological dysfunction
|
| Sample_geo_accession | GSM712507
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712507/suppl/GSM712507_af1c1302-32-male-10-replacement-181207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712507/suppl/GSM712507_af1c1302-32-male-10-replacement-181207.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712508 | GPL570 |
|
Experiment_Post_Surgical_1
|
Whole blood
|
tissue: whole blood
health status: POST_SURGICAL
|
Collected within 24 hours post surgery, major open chest surgery
|
| Sample_geo_accession | GSM712508
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712508/suppl/GSM712508_Control_009_DHC.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712508/suppl/GSM712508_Control_009_DHC.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712509 | GPL570 |
|
Experiment_Post_Surgical_2
|
Whole blood
|
tissue: whole blood
health status: POST_SURGICAL
|
Collected within 24 hours post surgery, major open chest surgery
|
| Sample_geo_accession | GSM712509
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712509/suppl/GSM712509_Control_010_SEN.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712509/suppl/GSM712509_Control_010_SEN.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712510 | GPL570 |
|
Experiment_Post_Surgical_3
|
Whole blood
|
tissue: whole blood
health status: POST_SURGICAL
|
Collected within 24 hours post surgery, major open chest surgery
|
| Sample_geo_accession | GSM712510
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712510/suppl/GSM712510_Control_012_RAW.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712510/suppl/GSM712510_Control_012_RAW.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712511 | GPL570 |
|
Experiment_Post_Surgical_4
|
Whole blood
|
tissue: whole blood
health status: POST_SURGICAL
|
Collected within 24 hours post surgery, major open chest surgery
|
| Sample_geo_accession | GSM712511
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712511/suppl/GSM712511_Control_014_MXM.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712511/suppl/GSM712511_Control_014_MXM.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712512 | GPL570 |
|
Experiment_Post_Surgical_5
|
Whole blood
|
tissue: whole blood
health status: POST_SURGICAL
|
Collected within 24 hours post surgery, major open chest surgery
|
| Sample_geo_accession | GSM712512
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712512/suppl/GSM712512_Control_015_JMW.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712512/suppl/GSM712512_Control_015_JMW.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712513 | GPL570 |
|
Experiment_Post_Surgical_6
|
Whole blood
|
tissue: whole blood
health status: POST_SURGICAL
|
Collected within 24 hours post surgery, major open chest surgery
|
| Sample_geo_accession | GSM712513
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712513/suppl/GSM712513_Control_016_KJC.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712513/suppl/GSM712513_Control_016_KJC.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712514 | GPL570 |
|
Experiment_Post_Surgical_7
|
Whole blood
|
tissue: whole blood
health status: POST_SURGICAL
|
Collected within 24 hours post surgery, major open chest surgery
|
| Sample_geo_accession | GSM712514
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712514/suppl/GSM712514_Control_018_JLB.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712514/suppl/GSM712514_Control_018_JLB.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712515 | GPL570 |
|
Experiment_Post_Surgical_8
|
Whole blood
|
tissue: whole blood
health status: POST_SURGICAL
|
Collected within 24 hours post surgery, major open chest surgery
|
| Sample_geo_accession | GSM712515
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712515/suppl/GSM712515_Control_019_R_F.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712515/suppl/GSM712515_Control_019_R_F.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712516 | GPL570 |
|
Experiment_Post_Surgical_9
|
Whole blood
|
tissue: whole blood
health status: POST_SURGICAL
|
Collected within 24 hours post surgery, major open chest surgery
|
| Sample_geo_accession | GSM712516
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712516/suppl/GSM712516_Control_020_JER.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712516/suppl/GSM712516_Control_020_JER.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712517 | GPL570 |
|
Experiment_Post_Surgical_10
|
Whole blood
|
tissue: whole blood
health status: POST_SURGICAL
|
Collected within 24 hours post surgery, major open chest surgery
|
| Sample_geo_accession | GSM712517
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712517/suppl/GSM712517_Control_021_MEF.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712517/suppl/GSM712517_Control_021_MEF.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
|
GSM712518 | GPL570 |
|
Experiment_Post_Surgical_11
|
Whole blood
|
tissue: whole blood
health status: POST_SURGICAL
|
Collected within 24 hours post surgery, major open chest surgery
|
| Sample_geo_accession | GSM712518
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Apr 20 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using PAXgene Blood RNA kits (PreAnalytix, a Qiagen/BD Company, Feldbachstrasse, Switzerland), according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the One-Cycle Target Labelling and Control Reagents Kit, according to manufacturers protocol from 10ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 10ug of fragmented biotinylated cRNA was hybridised for 16hrs at 45oC on a HGU133 Plus 2.0 GeneChip. After 16hrs GeneChips were washed on a FS_450 Fluidics Station using the EukGE-Ws2v5 script.
| | Sample_scan_protocol | Data was acquired on a 7G GeneChip Scanner 3000 and data extraction performed in GCOS v1.2.
| | Sample_data_processing | CHP files were generated using a combination of Affymetrix Power Tools, R and Perl scripts to filter background noise and normalise data based on a detection metric used to identify perfect match probes relative to other background probes. Differentially expressed genes were compared if the signal was >100 and the fold change was >2.0.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gareth,,Price
| | Sample_contact_email | gareth.price@mater.org.au
| | Sample_contact_phone | 61413289611
| | Sample_contact_laboratory | OMICS
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Mater Health Services
| | Sample_contact_address | Raymond Terrace
| | Sample_contact_city | Brisbane
| | Sample_contact_state | Queensland
| | Sample_contact_zip/postal_code | 4101
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712518/suppl/GSM712518_Control_022_ACB.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM712nnn/GSM712518/suppl/GSM712518_Control_022_ACB.mas5-bg.pm-mm.mas5-signal.chp.gz
| | Sample_series_id | GSE28750
| | Sample_data_row_count | 54675
| | |
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