Search results for the GEO ID: GSE28796  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM713198 | GPL570 |
|
breast biopsy, sample 1 rep 1
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 1
replicate: 1
|
6807-A- 589JP35
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713198
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713198/suppl/GSM713198.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713199 | GPL570 |
|
breast biopsy, sample 1 rep 2
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 1
replicate: 2
|
6807-B- 589JP53
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713199
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713199/suppl/GSM713199.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713200 | GPL570 |
|
breast biopsy, sample 2 rep 1
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 2
replicate: 1
|
6811-A- 589JP40
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713200
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713200/suppl/GSM713200.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713201 | GPL570 |
|
breast biopsy, sample 2 rep 2
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 2
replicate: 2
|
6811-B- 589JP41
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713201
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713201/suppl/GSM713201.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713202 | GPL570 |
|
breast biopsy, sample 3 rep 1
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 3
replicate: 1
|
6812-A- 589JP42
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713202
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713202/suppl/GSM713202.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713203 | GPL570 |
|
breast biopsy, sample 3 rep 2
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 3
replicate: 2
|
6812-B- 589JP43
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713203
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713203/suppl/GSM713203.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713204 | GPL570 |
|
breast biopsy, sample 4 rep 1
|
breast needle biopsy, pretreatment, pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: yes
sample: 4
replicate: 1
|
6813-A- 589JP32
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713204
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713204/suppl/GSM713204.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713205 | GPL570 |
|
breast biopsy, sample 4 rep 2
|
breast needle biopsy, pretreatment, pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: yes
sample: 4
replicate: 2
|
6813-B- 589JP52
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713205
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713205/suppl/GSM713205.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713206 | GPL570 |
|
breast biopsy, sample 5 rep 1
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 5
replicate: 1
|
6814-A- 589JP44
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713206
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713206/suppl/GSM713206.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713207 | GPL570 |
|
breast biopsy, sample 5 rep 2
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 5
replicate: 2
|
6814-B- 589JP45
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713207
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713207/suppl/GSM713207.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713208 | GPL570 |
|
breast biopsy, sample 6 rep 1
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 6
replicate: 1
|
6815-A- 589JP48
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713208
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713208/suppl/GSM713208.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713209 | GPL570 |
|
breast biopsy, sample 6 rep 2
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 6
replicate: 2
|
6815-B- 589JP49
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713209
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713209/suppl/GSM713209.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713210 | GPL570 |
|
breast biopsy, sample 7 rep 1
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 7
replicate: 1
|
6817-A- 589JP50
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713210
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713210/suppl/GSM713210.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713211 | GPL570 |
|
breast biopsy, sample 7 rep 2
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 7
replicate: 2
|
6817-B- 589JP51
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713211
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713211/suppl/GSM713211.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713212 | GPL570 |
|
breast biopsy, sample 8 rep 1
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 8
replicate: 1
|
6819-A- 589JP38
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713212
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713212/suppl/GSM713212.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713213 | GPL570 |
|
breast biopsy, sample 8 rep 2
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 8
replicate: 2
|
6819-B- 589JP39
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713213
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713213/suppl/GSM713213.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713214 | GPL570 |
|
breast biopsy, sample 9 rep 1
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 9
replicate: 1
|
6820-A- 589JP46
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713214
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713214/suppl/GSM713214.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713215 | GPL570 |
|
breast biopsy, sample 9 rep 2
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 9
replicate: 2
|
6820-B- 589JP47
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713215
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713215/suppl/GSM713215.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713216 | GPL570 |
|
breast biopsy, sample 10 rep 1
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 10
replicate: 1
|
6821-A- 589JP36
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713216
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713216/suppl/GSM713216.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713217 | GPL570 |
|
breast biopsy, sample 10 rep 2
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 10
replicate: 2
|
6821-B- 589JP37
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713217
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713217/suppl/GSM713217.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713218 | GPL570 |
|
breast biopsy, sample 11 rep 1
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 11
replicate: 1
|
6826-A- 589JP54
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713218
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713218/suppl/GSM713218.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713219 | GPL570 |
|
breast biopsy, sample 11 rep 2
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 11
replicate: 2
|
6826-B- 589JP55
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713219
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713219/suppl/GSM713219.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713220 | GPL570 |
|
breast biopsy, sample 12 rep 1
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 12
replicate: 1
|
6827-A- 589JP56
Gene expression data from pretreatment breast needle biopsies.
|
| Sample_geo_accession | GSM713220
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713220/suppl/GSM713220.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
| | |
|
GSM713221 | GPL570 |
|
breast biopsy, sample 12 rep 2
|
breast needle biopsy, pretreatment, non-pCR
|
tissue: breast tumor biopsy
treatment: pre-dose-dense docetaxel
pathological complete response: no
sample: 12
replicate: 2
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6827-B- 589JP57
Gene expression data from pretreatment breast needle biopsies.
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| Sample_geo_accession | GSM713221
| | Sample_status | Public on Apr 22 2011
| | Sample_submission_date | Apr 21 2011
| | Sample_last_update_date | Apr 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All samples are from pretreatment patients.
| | Sample_growth_protocol_ch1 | All samples are from frozen primary breast needle biopsies.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen biopsies were sectioned and laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_hyb_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_scan_protocol | See Vanderbilt Microarray Shared Resource (http://array.mc.vanderbilt.edu/).
| | Sample_data_processing | The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and log2 transformed using GeneSpring GX Software (Agilent).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,,Pietenpol
| | Sample_contact_email | j.pietenpol@vanderbilt.edu
| | Sample_contact_institute | Vanderbilt University Medical Center
| | Sample_contact_address | 652 Preston Research Building, 23rd Avenue South at Pierce
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713221/suppl/GSM713221.CEL.gz
| | Sample_series_id | GSE28796
| | Sample_data_row_count | 54675
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