Search results for the GEO ID: GSE28815  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM713542 | GPL570 |
|
IMR-90 Replicate 1
|
IMR-90
|
cell line: IMR-90
tissue: Lung Fibroblast
|
|
| Sample_geo_accession | GSM713542
| | Sample_status | Public on Mar 16 2012
| | Sample_submission_date | Apr 22 2011
| | Sample_last_update_date | Mar 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SMC4 was added to appropriate culture conditions during the culture process
| | Sample_growth_protocol_ch1 | Cells were routinely passaged twice a week in respective medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | PicoPure extraction of total RNA was performed according to Ambion's manufacturer’s protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Ambion MessageAmp II Biotin enhanced protocol from 100ng total RNA using the two round manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization to the Human Genome U133 Plus 2.0 GeneChips and staining were performed following Affymetrix protocols in a GeneChip Hybridization Oven 645. Staining was performed following Affymetrix protocols in a GeneChip Fluidics Station 450.
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console 1.1 using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dave,,Robbins
| | Sample_contact_email | dave.robbins@fatetherapeutics.com
| | Sample_contact_institute | Fate Therapeutics
| | Sample_contact_address | 3535 General Atomics Court Ste. 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713542/suppl/GSM713542.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713542/suppl/GSM713542.chp.gz
| | Sample_series_id | GSE28815
| | Sample_data_row_count | 54675
| | |
|
GSM713543 | GPL570 |
|
IMR-90 Replicate 2
|
IMR-90
|
cell line: IMR-90
tissue: Lung Fibroblast
|
|
| Sample_geo_accession | GSM713543
| | Sample_status | Public on Mar 16 2012
| | Sample_submission_date | Apr 22 2011
| | Sample_last_update_date | Mar 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SMC4 was added to appropriate culture conditions during the culture process
| | Sample_growth_protocol_ch1 | Cells were routinely passaged twice a week in respective medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | PicoPure extraction of total RNA was performed according to Ambion's manufacturer protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Ambion MessageAmp II Biotin enhanced protocol from 100ng total RNA using the two round manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization to the Human Genome U133 Plus 2.0 GeneChips and staining were performed following Affymetrix protocols in a GeneChip Hybridization Oven 645. Staining was performed following Affymetrix protocols in a GeneChip Fluidics Station 450.
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console 1.1 using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dave,,Robbins
| | Sample_contact_email | dave.robbins@fatetherapeutics.com
| | Sample_contact_institute | Fate Therapeutics
| | Sample_contact_address | 3535 General Atomics Court Ste. 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713543/suppl/GSM713543.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713543/suppl/GSM713543.chp.gz
| | Sample_series_id | GSE28815
| | Sample_data_row_count | 54675
| | |
|
GSM713544 | GPL570 |
|
hiPSC Conventional from IMR-90 Replicate 1
|
IMR-90 Conventional iPSC
|
cell line: IMR-90
tissue: Lung Fibroblast
|
|
| Sample_geo_accession | GSM713544
| | Sample_status | Public on Mar 16 2012
| | Sample_submission_date | Apr 22 2011
| | Sample_last_update_date | Mar 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SMC4 was added to appropriate culture conditions during the culture process
| | Sample_growth_protocol_ch1 | Cells were routinely passaged twice a week in respective medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | PicoPure extraction of total RNA was performed according to Ambion's manufacturer protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Ambion MessageAmp II Biotin enhanced protocol from 100ng total RNA using the two round manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization to the Human Genome U133 Plus 2.0 GeneChips and staining were performed following Affymetrix protocols in a GeneChip Hybridization Oven 645. Staining was performed following Affymetrix protocols in a GeneChip Fluidics Station 450.
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console 1.1 using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dave,,Robbins
| | Sample_contact_email | dave.robbins@fatetherapeutics.com
| | Sample_contact_institute | Fate Therapeutics
| | Sample_contact_address | 3535 General Atomics Court Ste. 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713544/suppl/GSM713544.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713544/suppl/GSM713544.chp.gz
| | Sample_series_id | GSE28815
| | Sample_data_row_count | 54675
| | |
|
GSM713545 | GPL570 |
|
hiPSC Conventional from IMR-90 Replicate 2
|
IMR-90 Conventional iPSC
|
cell line: IMR-90
tissue: Lung Fibroblast
|
|
| Sample_geo_accession | GSM713545
| | Sample_status | Public on Mar 16 2012
| | Sample_submission_date | Apr 22 2011
| | Sample_last_update_date | Mar 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SMC4 was added to appropriate culture conditions during the culture process
| | Sample_growth_protocol_ch1 | Cells were routinely passaged twice a week in respective medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | PicoPure extraction of total RNA was performed according to Ambion's manufacturer protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Ambion MessageAmp II Biotin enhanced protocol from 100ng total RNA using the two round manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization to the Human Genome U133 Plus 2.0 GeneChips and staining were performed following Affymetrix protocols in a GeneChip Hybridization Oven 645. Staining was performed following Affymetrix protocols in a GeneChip Fluidics Station 450.
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console 1.1 using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dave,,Robbins
| | Sample_contact_email | dave.robbins@fatetherapeutics.com
| | Sample_contact_institute | Fate Therapeutics
| | Sample_contact_address | 3535 General Atomics Court Ste. 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713545/suppl/GSM713545.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713545/suppl/GSM713545.chp.gz
| | Sample_series_id | GSE28815
| | Sample_data_row_count | 54675
| | |
|
GSM713546 | GPL570 |
|
hiPSC SMC4 from IMR-90 Replicate 1
|
IMR-90 SMC4 iPSC
|
cell line: IMR-90
tissue: Lung Fibroblast
|
|
| Sample_geo_accession | GSM713546
| | Sample_status | Public on Mar 16 2012
| | Sample_submission_date | Apr 22 2011
| | Sample_last_update_date | Mar 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SMC4 was added to appropriate culture conditions during the culture process
| | Sample_growth_protocol_ch1 | Cells were routinely passaged twice a week in respective medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | PicoPure extraction of total RNA was performed according to Ambion's manufacturer protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Ambion MessageAmp II Biotin enhanced protocol from 100ng total RNA using the two round manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization to the Human Genome U133 Plus 2.0 GeneChips and staining were performed following Affymetrix protocols in a GeneChip Hybridization Oven 645. Staining was performed following Affymetrix protocols in a GeneChip Fluidics Station 450.
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console 1.1 using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dave,,Robbins
| | Sample_contact_email | dave.robbins@fatetherapeutics.com
| | Sample_contact_institute | Fate Therapeutics
| | Sample_contact_address | 3535 General Atomics Court Ste. 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713546/suppl/GSM713546.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713546/suppl/GSM713546.chp.gz
| | Sample_series_id | GSE28815
| | Sample_data_row_count | 54675
| | |
|
GSM713547 | GPL570 |
|
hiPSC SMC4 from IMR-90 Replicate 2
|
IMR-90 SMC4 iPSC
|
cell line: IMR-90
tissue: Lung Fibroblast
|
|
| Sample_geo_accession | GSM713547
| | Sample_status | Public on Mar 16 2012
| | Sample_submission_date | Apr 22 2011
| | Sample_last_update_date | Mar 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SMC4 was added to appropriate culture conditions during the culture process
| | Sample_growth_protocol_ch1 | Cells were routinely passaged twice a week in respective medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | PicoPure extraction of total RNA was performed according to Ambion's manufacturer protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Ambion MessageAmp II Biotin enhanced protocol from 100ng total RNA using the two round manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization to the Human Genome U133 Plus 2.0 GeneChips and staining were performed following Affymetrix protocols in a GeneChip Hybridization Oven 645. Staining was performed following Affymetrix protocols in a GeneChip Fluidics Station 450.
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console 1.1 using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dave,,Robbins
| | Sample_contact_email | dave.robbins@fatetherapeutics.com
| | Sample_contact_institute | Fate Therapeutics
| | Sample_contact_address | 3535 General Atomics Court Ste. 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713547/suppl/GSM713547.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713547/suppl/GSM713547.chp.gz
| | Sample_series_id | GSE28815
| | Sample_data_row_count | 54675
| | |
|
GSM713549 | GPL570 |
|
H1 Replicate 1
|
Human Blastocyst
|
cell line: H1
tissue: Blastocyst
|
|
| Sample_geo_accession | GSM713549
| | Sample_status | Public on Mar 16 2012
| | Sample_submission_date | Apr 22 2011
| | Sample_last_update_date | Mar 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SMC4 was added to appropriate culture conditions during the culture process
| | Sample_growth_protocol_ch1 | Cells were routinely passaged twice a week in respective medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | PicoPure extraction of total RNA was performed according to Ambion's manufacturer protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Ambion MessageAmp II Biotin enhanced protocol from 100ng total RNA using the two round manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization to the Human Genome U133 Plus 2.0 GeneChips and staining were performed following Affymetrix protocols in a GeneChip Hybridization Oven 645. Staining was performed following Affymetrix protocols in a GeneChip Fluidics Station 450.
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console 1.1 using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dave,,Robbins
| | Sample_contact_email | dave.robbins@fatetherapeutics.com
| | Sample_contact_institute | Fate Therapeutics
| | Sample_contact_address | 3535 General Atomics Court Ste. 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713549/suppl/GSM713549.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713549/suppl/GSM713549.chp.gz
| | Sample_series_id | GSE28815
| | Sample_data_row_count | 54675
| | |
|
GSM713554 | GPL570 |
|
HUES9 Replicate 1
|
Human Blastocyst
|
cell line: HUES9
tissue: Blastocyst
|
|
| Sample_geo_accession | GSM713554
| | Sample_status | Public on Mar 16 2012
| | Sample_submission_date | Apr 22 2011
| | Sample_last_update_date | Mar 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SMC4 was added to appropriate culture conditions during the culture process
| | Sample_growth_protocol_ch1 | Cells were routinely passaged twice a week in respective medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | PicoPure extraction of total RNA was performed according to Ambion's manufacturer protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Ambion MessageAmp II Biotin enhanced protocol from 100ng total RNA using the two round manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization to the Human Genome U133 Plus 2.0 GeneChips and staining were performed following Affymetrix protocols in a GeneChip Hybridization Oven 645. Staining was performed following Affymetrix protocols in a GeneChip Fluidics Station 450.
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console 1.1 using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dave,,Robbins
| | Sample_contact_email | dave.robbins@fatetherapeutics.com
| | Sample_contact_institute | Fate Therapeutics
| | Sample_contact_address | 3535 General Atomics Court Ste. 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713554/suppl/GSM713554.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713554/suppl/GSM713554.chp.gz
| | Sample_series_id | GSE28815
| | Sample_data_row_count | 54675
| | |
|
GSM713560 | GPL570 |
|
FTC1 Foreskin Fibroblast
|
Foreskin Fibroblast
|
cell line: FTC1
tissue: Foreskin Fibroblast
|
|
| Sample_geo_accession | GSM713560
| | Sample_status | Public on Mar 16 2012
| | Sample_submission_date | Apr 22 2011
| | Sample_last_update_date | Mar 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SMC4 was added to appropriate culture conditions during the culture process
| | Sample_growth_protocol_ch1 | Cells were routinely passaged twice a week in respective medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | PicoPure extraction of total RNA was performed according to Ambion's manufacturer protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Ambion MessageAmp II Biotin enhanced protocol from 100ng total RNA using the two round manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization to the Human Genome U133 Plus 2.0 GeneChips and staining were performed following Affymetrix protocols in a GeneChip Hybridization Oven 645. Staining was performed following Affymetrix protocols in a GeneChip Fluidics Station 450.
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console 1.1 using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dave,,Robbins
| | Sample_contact_email | dave.robbins@fatetherapeutics.com
| | Sample_contact_institute | Fate Therapeutics
| | Sample_contact_address | 3535 General Atomics Court Ste. 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713560/suppl/GSM713560.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713560/suppl/GSM713560.chp.gz
| | Sample_series_id | GSE28815
| | Sample_data_row_count | 54675
| | |
|
GSM713575 | GPL570 |
|
hiPSC SMC4 from FTC1 - FTi91
|
FTC1 SMC4 iPSC - FTi91
|
cell line: FTC1
tissue: Foreskin Fibroblast
|
|
| Sample_geo_accession | GSM713575
| | Sample_status | Public on Mar 16 2012
| | Sample_submission_date | Apr 22 2011
| | Sample_last_update_date | Mar 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SMC4 was added to appropriate culture conditions during the culture process
| | Sample_growth_protocol_ch1 | Cells were routinely passaged twice a week in respective medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | PicoPure extraction of total RNA was performed according to Ambion's manufacturer protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Ambion MessageAmp II Biotin enhanced protocol from 100ng total RNA using the two round manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization to the Human Genome U133 Plus 2.0 GeneChips and staining were performed following Affymetrix protocols in a GeneChip Hybridization Oven 645. Staining was performed following Affymetrix protocols in a GeneChip Fluidics Station 450.
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console 1.1 using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dave,,Robbins
| | Sample_contact_email | dave.robbins@fatetherapeutics.com
| | Sample_contact_institute | Fate Therapeutics
| | Sample_contact_address | 3535 General Atomics Court Ste. 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713575/suppl/GSM713575.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713575/suppl/GSM713575.chp.gz
| | Sample_series_id | GSE28815
| | Sample_data_row_count | 54675
| | |
|
GSM713577 | GPL570 |
|
hiPSC SMC4 from FTC1 - FTi93
|
FTC1 SMC4 iPSC - FTi93
|
cell line: FTC1
tissue: Foreskin Fibroblast
|
|
| Sample_geo_accession | GSM713577
| | Sample_status | Public on Mar 16 2012
| | Sample_submission_date | Apr 22 2011
| | Sample_last_update_date | Mar 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SMC4 was added to appropriate culture conditions during the culture process
| | Sample_growth_protocol_ch1 | Cells were routinely passaged twice a week in respective medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | PicoPure extraction of total RNA was performed according to Ambion's manufacturer protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Ambion MessageAmp II Biotin enhanced protocol from 100ng total RNA using the two round manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization to the Human Genome U133 Plus 2.0 GeneChips and staining were performed following Affymetrix protocols in a GeneChip Hybridization Oven 645. Staining was performed following Affymetrix protocols in a GeneChip Fluidics Station 450.
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console 1.1 using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dave,,Robbins
| | Sample_contact_email | dave.robbins@fatetherapeutics.com
| | Sample_contact_institute | Fate Therapeutics
| | Sample_contact_address | 3535 General Atomics Court Ste. 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713577/suppl/GSM713577.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713577/suppl/GSM713577.chp.gz
| | Sample_series_id | GSE28815
| | Sample_data_row_count | 54675
| | |
|
GSM713581 | GPL570 |
|
hiPSC Conventional from FTC1 - FTi99
|
FTC1 Conventional iPSC - FTi99
|
cell line: FTC1
tissue: Foreskin Fibroblast
|
|
| Sample_geo_accession | GSM713581
| | Sample_status | Public on Mar 16 2012
| | Sample_submission_date | Apr 22 2011
| | Sample_last_update_date | Mar 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SMC4 was added to appropriate culture conditions during the culture process
| | Sample_growth_protocol_ch1 | Cells were routinely passaged twice a week in respective medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | PicoPure extraction of total RNA was performed according to Ambion's manufacturer protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Ambion MessageAmp II Biotin enhanced protocol from 100ng total RNA using the two round manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization to the Human Genome U133 Plus 2.0 GeneChips and staining were performed following Affymetrix protocols in a GeneChip Hybridization Oven 645. Staining was performed following Affymetrix protocols in a GeneChip Fluidics Station 450.
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console 1.1 using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dave,,Robbins
| | Sample_contact_email | dave.robbins@fatetherapeutics.com
| | Sample_contact_institute | Fate Therapeutics
| | Sample_contact_address | 3535 General Atomics Court Ste. 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713581/suppl/GSM713581.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713581/suppl/GSM713581.chp.gz
| | Sample_series_id | GSE28815
| | Sample_data_row_count | 54675
| | |
|
GSM713587 | GPL570 |
|
H1 Replicate 2
|
Human Blastocyst
|
cell line: H1
tissue: Blastocyst
|
|
| Sample_geo_accession | GSM713587
| | Sample_status | Public on Mar 16 2012
| | Sample_submission_date | Apr 22 2011
| | Sample_last_update_date | Mar 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SMC4 was added to appropriate culture conditions during the culture process
| | Sample_growth_protocol_ch1 | Cells were routinely passaged twice a week in respective medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | PicoPure extraction of total RNA was performed according to Ambion's manufacturer protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Ambion MessageAmp II Biotin enhanced protocol from 100ng total RNA using the two round manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization to the Human Genome U133 Plus 2.0 GeneChips and staining were performed following Affymetrix protocols in a GeneChip Hybridization Oven 645. Staining was performed following Affymetrix protocols in a GeneChip Fluidics Station 450.
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console 1.1 using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dave,,Robbins
| | Sample_contact_email | dave.robbins@fatetherapeutics.com
| | Sample_contact_institute | Fate Therapeutics
| | Sample_contact_address | 3535 General Atomics Court Ste. 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713587/suppl/GSM713587.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713587/suppl/GSM713587.chp.gz
| | Sample_series_id | GSE28815
| | Sample_data_row_count | 54675
| | |
|
GSM713590 | GPL570 |
|
HUES9 Replicate 2
|
Human Blastocyst
|
cell line: HUES9
tissue: Blastocyst
|
|
| Sample_geo_accession | GSM713590
| | Sample_status | Public on Mar 16 2012
| | Sample_submission_date | Apr 22 2011
| | Sample_last_update_date | Mar 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SMC4 was added to appropriate culture conditions during the culture process
| | Sample_growth_protocol_ch1 | Cells were routinely passaged twice a week in respective medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | PicoPure extraction of total RNA was performed according to Ambion's manufacturer protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Ambion MessageAmp II Biotin enhanced protocol from 100ng total RNA using the two round manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization to the Human Genome U133 Plus 2.0 GeneChips and staining were performed following Affymetrix protocols in a GeneChip Hybridization Oven 645. Staining was performed following Affymetrix protocols in a GeneChip Fluidics Station 450.
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console 1.1 using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dave,,Robbins
| | Sample_contact_email | dave.robbins@fatetherapeutics.com
| | Sample_contact_institute | Fate Therapeutics
| | Sample_contact_address | 3535 General Atomics Court Ste. 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713590/suppl/GSM713590.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713590/suppl/GSM713590.chp.gz
| | Sample_series_id | GSE28815
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
