Search results for the GEO ID: GSE28823  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM713993 | GPL1261 |
|
Normal Thy1+DP_08N6, biological rep1
|
Normal Balb/c
|
strain: Balb/c
disease state: Normal
tissue: Thymus
cell sorting status: Sorted
cell type: Thy1+DP+ (CD4+CD8+) cells
|
DP+ #1
Gene expression data from sorted normal thymus cells
|
| Sample_geo_accession | GSM713993
| | Sample_status | Public on Feb 14 2012
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Feb 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix Mouse430 2.0 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw .cel files were processed for background correction and quantile normalization (median scaling) using the robust multiarray averaging (RMA) method using GenePattern software (http://genepattern.broadinstitute.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mingqiang,,Ren
| | Sample_contact_email | mren@gru.edu
| | Sample_contact_phone | 7067215257
| | Sample_contact_department | Cancer Center
| | Sample_contact_institute | Georgia Regents University
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713993/suppl/GSM713993.CEL.gz
| | Sample_series_id | GSE28823
| | Sample_data_row_count | 45101
| | |
|
GSM713994 | GPL1261 |
|
Normal Thy1+DP_08N7, biological rep2
|
Normal Balb/c
|
strain: Balb/c
disease state: Normal
tissue: Thymus
cell sorting status: Sorted
cell type: Thy1+DP+ (CD4+CD8+) cells
|
DP+ #2
Gene expression data from sorted normal thymus cells
|
| Sample_geo_accession | GSM713994
| | Sample_status | Public on Feb 14 2012
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Feb 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix Mouse430 2.0 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw .cel files were processed for background correction and quantile normalization (median scaling) using the robust multiarray averaging (RMA) method using GenePattern software (http://genepattern.broadinstitute.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mingqiang,,Ren
| | Sample_contact_email | mren@gru.edu
| | Sample_contact_phone | 7067215257
| | Sample_contact_department | Cancer Center
| | Sample_contact_institute | Georgia Regents University
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713994/suppl/GSM713994.CEL.gz
| | Sample_series_id | GSE28823
| | Sample_data_row_count | 45101
| | |
|
GSM713995 | GPL1261 |
|
Normal Thy1+DP_08N8, biological rep3
|
Normal Balb/c
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strain: Balb/c
disease state: Normal
tissue: Thymus
cell sorting status: Sorted
cell type: Thy1+DP+ (CD4+CD8+) cells
|
DP+ #3
Gene expression data from sorted normal thymus cells
|
| Sample_geo_accession | GSM713995
| | Sample_status | Public on Feb 14 2012
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Feb 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix Mouse430 2.0 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw .cel files were processed for background correction and quantile normalization (median scaling) using the robust multiarray averaging (RMA) method using GenePattern software (http://genepattern.broadinstitute.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mingqiang,,Ren
| | Sample_contact_email | mren@gru.edu
| | Sample_contact_phone | 7067215257
| | Sample_contact_department | Cancer Center
| | Sample_contact_institute | Georgia Regents University
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713995/suppl/GSM713995.CEL.gz
| | Sample_series_id | GSE28823
| | Sample_data_row_count | 45101
| | |
|
GSM713997 | GPL1261 |
|
T-cell lymphoma, biological rep2
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ZMYM2-FGFR1 mice
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disease state: ZMYM2-FGFR1
tissue: T-cell Lymphoma
cell sorting status: Unsorted
cell type: >90% of cells were GFP+Thy1+DP+
|
T-lym_2
Gene expression data from T-cell lymphoma
|
| Sample_geo_accession | GSM713997
| | Sample_status | Public on Feb 14 2012
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Feb 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix Mouse430 2.0 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw .cel files were processed for background correction and quantile normalization (median scaling) using the robust multiarray averaging (RMA) method using GenePattern software (http://genepattern.broadinstitute.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mingqiang,,Ren
| | Sample_contact_email | mren@gru.edu
| | Sample_contact_phone | 7067215257
| | Sample_contact_department | Cancer Center
| | Sample_contact_institute | Georgia Regents University
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713997/suppl/GSM713997.CEL.gz
| | Sample_series_id | GSE28823
| | Sample_data_row_count | 45101
| | |
|
GSM713998 | GPL1261 |
|
T-cell lymphoma, biological rep3
|
ZMYM2-FGFR1 mice
|
disease state: ZMYM2-FGFR1
tissue: T-cell Lymphoma
cell sorting status: Unsorted
cell type: >90% of cells were GFP+Thy1+DP+
|
T-lym_3
Gene expression data from T-cell lymphoma
|
| Sample_geo_accession | GSM713998
| | Sample_status | Public on Feb 14 2012
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Feb 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix Mouse430 2.0 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw .cel files were processed for background correction and quantile normalization (median scaling) using the robust multiarray averaging (RMA) method using GenePattern software (http://genepattern.broadinstitute.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mingqiang,,Ren
| | Sample_contact_email | mren@gru.edu
| | Sample_contact_phone | 7067215257
| | Sample_contact_department | Cancer Center
| | Sample_contact_institute | Georgia Regents University
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713998/suppl/GSM713998.CEL.gz
| | Sample_series_id | GSE28823
| | Sample_data_row_count | 45101
| | |
|
GSM713999 | GPL1261 |
|
T-cell lymphoma sorted, biological rep4
|
ZMYM2-FGFR1 mice
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disease state: ZMYM2-FGFR1
tissue: T-cell Lymphoma
cell sorting status: Sorted
cell type: GFP+Thy1+DP+ cells
|
T-lym sorted
Gene expression data from sorted T-cell lymphoma
|
| Sample_geo_accession | GSM713999
| | Sample_status | Public on Feb 14 2012
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Feb 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix Mouse430 2.0 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw .cel files were processed for background correction and quantile normalization (median scaling) using the robust multiarray averaging (RMA) method using GenePattern software (http://genepattern.broadinstitute.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mingqiang,,Ren
| | Sample_contact_email | mren@gru.edu
| | Sample_contact_phone | 7067215257
| | Sample_contact_department | Cancer Center
| | Sample_contact_institute | Georgia Regents University
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM713nnn/GSM713999/suppl/GSM713999.CEL.gz
| | Sample_series_id | GSE28823
| | Sample_data_row_count | 45101
| | |
|
GSM714000 | GPL1261 |
|
ZNF112 cells
|
ZNF112 cell line
|
cell line: ZNF112
cell sorting status: Unsorted
|
ZNF112
Gene expression data from ZNF112 cells
|
| Sample_geo_accession | GSM714000
| | Sample_status | Public on Feb 14 2012
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Feb 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix Mouse430 2.0 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw .cel files were processed for background correction and quantile normalization (median scaling) using the robust multiarray averaging (RMA) method using GenePattern software (http://genepattern.broadinstitute.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mingqiang,,Ren
| | Sample_contact_email | mren@gru.edu
| | Sample_contact_phone | 7067215257
| | Sample_contact_department | Cancer Center
| | Sample_contact_institute | Georgia Regents University
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714000/suppl/GSM714000.CEL.gz
| | Sample_series_id | GSE28823
| | Sample_data_row_count | 45101
| | |
|
GSM714001 | GPL1261 |
|
Normal HSC, biological rep1
|
Normal Balb/c
|
strain: Balb/c
disease state: Normal
tissue: Bone marrow
cell sorting status: Sorted
cell type: HSC (Lin-Sca-1+c-kit+)
|
HSC_1
Gene expression data from normal sorted HSC
|
| Sample_geo_accession | GSM714001
| | Sample_status | Public on Feb 14 2012
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Feb 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix Mouse430 2.0 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw .cel files were processed for background correction and quantile normalization (median scaling) using the robust multiarray averaging (RMA) method using GenePattern software (http://genepattern.broadinstitute.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mingqiang,,Ren
| | Sample_contact_email | mren@gru.edu
| | Sample_contact_phone | 7067215257
| | Sample_contact_department | Cancer Center
| | Sample_contact_institute | Georgia Regents University
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714001/suppl/GSM714001.CEL.gz
| | Sample_series_id | GSE28823
| | Sample_data_row_count | 45101
| | |
|
GSM714002 | GPL1261 |
|
Normal HSC, biological rep2
|
Normal Balb/c
|
strain: Balb/c
disease state: Normal
tissue: Bone marrow
cell sorting status: Sorted
cell type: HSC (Lin-Sca-1+c-kit+)
|
HSC_3
Gene expression data from normal sorted HSC
|
| Sample_geo_accession | GSM714002
| | Sample_status | Public on Feb 14 2012
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Feb 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix Mouse430 2.0 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw .cel files were processed for background correction and quantile normalization (median scaling) using the robust multiarray averaging (RMA) method using GenePattern software (http://genepattern.broadinstitute.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mingqiang,,Ren
| | Sample_contact_email | mren@gru.edu
| | Sample_contact_phone | 7067215257
| | Sample_contact_department | Cancer Center
| | Sample_contact_institute | Georgia Regents University
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714002/suppl/GSM714002.CEL.gz
| | Sample_series_id | GSE28823
| | Sample_data_row_count | 45101
| | |
|
GSM714003 | GPL1261 |
|
Leukemia stem cells (LSC), biological rep1
|
ZMYM2-FGFR1 mice
|
disease state: ZMYM2-FGFR1
tissue: Bone marrow and spleen
cell sorting status: Sorted
cell type: LSC (LSK, GFP+ Lin-Sca-1+c-kit+ cells)
|
LSC_1
Gene expression data from normal sorted LSC
|
| Sample_geo_accession | GSM714003
| | Sample_status | Public on Feb 14 2012
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Feb 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix Mouse430 2.0 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw .cel files were processed for background correction and quantile normalization (median scaling) using the robust multiarray averaging (RMA) method using GenePattern software (http://genepattern.broadinstitute.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mingqiang,,Ren
| | Sample_contact_email | mren@gru.edu
| | Sample_contact_phone | 7067215257
| | Sample_contact_department | Cancer Center
| | Sample_contact_institute | Georgia Regents University
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714003/suppl/GSM714003.CEL.gz
| | Sample_series_id | GSE28823
| | Sample_data_row_count | 45101
| | |
|
GSM714004 | GPL1261 |
|
Leukemia stem cells (LSC), biological rep2
|
ZMYM2-FGFR1 mice
|
disease state: ZMYM2-FGFR1
tissue: Bone marrow and spleen
cell sorting status: Sorted
cell type: LSC (LSK, GFP+ Lin-Sca-1+c-kit+ cells)
|
LSC_3
Gene expression data from normal sorted LSC
|
| Sample_geo_accession | GSM714004
| | Sample_status | Public on Feb 14 2012
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Feb 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix Mouse430 2.0 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw .cel files were processed for background correction and quantile normalization (median scaling) using the robust multiarray averaging (RMA) method using GenePattern software (http://genepattern.broadinstitute.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mingqiang,,Ren
| | Sample_contact_email | mren@gru.edu
| | Sample_contact_phone | 7067215257
| | Sample_contact_department | Cancer Center
| | Sample_contact_institute | Georgia Regents University
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714004/suppl/GSM714004.CEL.gz
| | Sample_series_id | GSE28823
| | Sample_data_row_count | 45101
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