Search results for the GEO ID: GSE28846  |
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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM714346 | GPL570 |
|
MCF7
|
cancer cell line
|
cell line: MCF7
cancer cell type: non-aggressive
|
gene expression data of cancer cell line
|
| Sample_geo_accession | GSM714346
| | Sample_status | Public on Aug 10 2011
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Aug 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7, OVCAR3, SKOV3, C8161, MUM2C, and LNCaP cells were grown in RPMI medium with FCS and glutamine; 231MFP cells were grown in L-15 medium with FCS and glutamine; PC3 cells were grown in F12K medium with FCS and glutamine; DU145 cells were grown in DMEM medium with FCS and glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using a Qiagen RNAeasy kit per manufactuerer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Human HG-U133Plus2 Genome Array.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Nomura
| | Sample_contact_email | DNomura@scripps.edu
| | Sample_contact_phone | 858-784-8636
| | Sample_contact_institute | the Scripps Research Institute
| | Sample_contact_address | 10550 North Torrey Pines Rd. SR107
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714346/suppl/GSM714346.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714346/suppl/GSM714346.CHP.gz
| | Sample_series_id | GSE28846
| | Sample_data_row_count | 54675
| | |
|
GSM714347 | GPL570 |
|
231MFP
|
cancer cell line
|
cell line: 231MFP
cancer cell type: aggressive
|
gene expression data of cancer cell line
|
| Sample_geo_accession | GSM714347
| | Sample_status | Public on Aug 10 2011
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Aug 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7, OVCAR3, SKOV3, C8161, MUM2C, and LNCaP cells were grown in RPMI medium with FCS and glutamine; 231MFP cells were grown in L-15 medium with FCS and glutamine; PC3 cells were grown in F12K medium with FCS and glutamine; DU145 cells were grown in DMEM medium with FCS and glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using a Qiagen RNAeasy kit per manufactuerer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Human HG-U133Plus2 Genome Array.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Nomura
| | Sample_contact_email | DNomura@scripps.edu
| | Sample_contact_phone | 858-784-8636
| | Sample_contact_institute | the Scripps Research Institute
| | Sample_contact_address | 10550 North Torrey Pines Rd. SR107
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714347/suppl/GSM714347.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714347/suppl/GSM714347.CHP.gz
| | Sample_series_id | GSE28846
| | Sample_data_row_count | 54675
| | |
|
GSM714348 | GPL570 |
|
OVCAR3
|
cancer cell line
|
cell line: OVCAR3
cancer cell type: non-aggressive
|
gene expression data of cancer cell line
|
| Sample_geo_accession | GSM714348
| | Sample_status | Public on Aug 10 2011
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Aug 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7, OVCAR3, SKOV3, C8161, MUM2C, and LNCaP cells were grown in RPMI medium with FCS and glutamine; 231MFP cells were grown in L-15 medium with FCS and glutamine; PC3 cells were grown in F12K medium with FCS and glutamine; DU145 cells were grown in DMEM medium with FCS and glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using a Qiagen RNAeasy kit per manufactuerer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Human HG-U133Plus2 Genome Array.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Nomura
| | Sample_contact_email | DNomura@scripps.edu
| | Sample_contact_phone | 858-784-8636
| | Sample_contact_institute | the Scripps Research Institute
| | Sample_contact_address | 10550 North Torrey Pines Rd. SR107
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714348/suppl/GSM714348.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714348/suppl/GSM714348.CHP.gz
| | Sample_series_id | GSE28846
| | Sample_data_row_count | 54675
| | |
|
GSM714349 | GPL570 |
|
SKOV3
|
cancer cell line
|
cell line: SKOV3
cancer cell type: aggressive
|
gene expression data of cancer cell line
|
| Sample_geo_accession | GSM714349
| | Sample_status | Public on Aug 10 2011
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Aug 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7, OVCAR3, SKOV3, C8161, MUM2C, and LNCaP cells were grown in RPMI medium with FCS and glutamine; 231MFP cells were grown in L-15 medium with FCS and glutamine; PC3 cells were grown in F12K medium with FCS and glutamine; DU145 cells were grown in DMEM medium with FCS and glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using a Qiagen RNAeasy kit per manufactuerer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Human HG-U133Plus2 Genome Array.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Nomura
| | Sample_contact_email | DNomura@scripps.edu
| | Sample_contact_phone | 858-784-8636
| | Sample_contact_institute | the Scripps Research Institute
| | Sample_contact_address | 10550 North Torrey Pines Rd. SR107
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714349/suppl/GSM714349.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714349/suppl/GSM714349.CHP.gz
| | Sample_series_id | GSE28846
| | Sample_data_row_count | 54675
| | |
|
GSM714350 | GPL570 |
|
MUM2C
|
cancer cell line
|
cell line: MUM2C
cancer cell type: non-aggressive
|
gene expression data of cancer cell line
|
| Sample_geo_accession | GSM714350
| | Sample_status | Public on Aug 10 2011
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Aug 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7, OVCAR3, SKOV3, C8161, MUM2C, and LNCaP cells were grown in RPMI medium with FCS and glutamine; 231MFP cells were grown in L-15 medium with FCS and glutamine; PC3 cells were grown in F12K medium with FCS and glutamine; DU145 cells were grown in DMEM medium with FCS and glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using a Qiagen RNAeasy kit per manufactuerer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Human HG-U133Plus2 Genome Array.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Nomura
| | Sample_contact_email | DNomura@scripps.edu
| | Sample_contact_phone | 858-784-8636
| | Sample_contact_institute | the Scripps Research Institute
| | Sample_contact_address | 10550 North Torrey Pines Rd. SR107
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714350/suppl/GSM714350.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714350/suppl/GSM714350.CHP.gz
| | Sample_series_id | GSE28846
| | Sample_data_row_count | 54675
| | |
|
GSM714351 | GPL570 |
|
C8161
|
cancer cell line
|
cell line: C8161
cancer cell type: aggressive
|
gene expression data of cancer cell line
|
| Sample_geo_accession | GSM714351
| | Sample_status | Public on Aug 10 2011
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Aug 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7, OVCAR3, SKOV3, C8161, MUM2C, and LNCaP cells were grown in RPMI medium with FCS and glutamine; 231MFP cells were grown in L-15 medium with FCS and glutamine; PC3 cells were grown in F12K medium with FCS and glutamine; DU145 cells were grown in DMEM medium with FCS and glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using a Qiagen RNAeasy kit per manufactuerer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Human HG-U133Plus2 Genome Array.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Nomura
| | Sample_contact_email | DNomura@scripps.edu
| | Sample_contact_phone | 858-784-8636
| | Sample_contact_institute | the Scripps Research Institute
| | Sample_contact_address | 10550 North Torrey Pines Rd. SR107
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714351/suppl/GSM714351.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714351/suppl/GSM714351.CHP.gz
| | Sample_series_id | GSE28846
| | Sample_data_row_count | 54675
| | |
|
GSM714352 | GPL570 |
|
LNCaP
|
cancer cell line
|
cell line: LNCaP
cancer cell type: non-aggressive
|
gene expression data of cancer cell line
|
| Sample_geo_accession | GSM714352
| | Sample_status | Public on Aug 10 2011
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Aug 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7, OVCAR3, SKOV3, C8161, MUM2C, and LNCaP cells were grown in RPMI medium with FCS and glutamine; 231MFP cells were grown in L-15 medium with FCS and glutamine; PC3 cells were grown in F12K medium with FCS and glutamine; DU145 cells were grown in DMEM medium with FCS and glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using a Qiagen RNAeasy kit per manufactuerer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Human HG-U133Plus2 Genome Array.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Nomura
| | Sample_contact_email | DNomura@scripps.edu
| | Sample_contact_phone | 858-784-8636
| | Sample_contact_institute | the Scripps Research Institute
| | Sample_contact_address | 10550 North Torrey Pines Rd. SR107
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714352/suppl/GSM714352.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714352/suppl/GSM714352.CHP.gz
| | Sample_series_id | GSE28846
| | Sample_data_row_count | 54675
| | |
|
GSM714353 | GPL570 |
|
DU145
|
cancer cell line
|
cancer cell type: aggressive
cell line: DU145
|
gene expression data of cancer cell line
|
| Sample_geo_accession | GSM714353
| | Sample_status | Public on Aug 10 2011
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Aug 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7, OVCAR3, SKOV3, C8161, MUM2C, and LNCaP cells were grown in RPMI medium with FCS and glutamine; 231MFP cells were grown in L-15 medium with FCS and glutamine; PC3 cells were grown in F12K medium with FCS and glutamine; DU145 cells were grown in DMEM medium with FCS and glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using a Qiagen RNAeasy kit per manufactuerer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Human HG-U133Plus2 Genome Array.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Nomura
| | Sample_contact_email | DNomura@scripps.edu
| | Sample_contact_phone | 858-784-8636
| | Sample_contact_institute | the Scripps Research Institute
| | Sample_contact_address | 10550 North Torrey Pines Rd. SR107
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714353/suppl/GSM714353.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714353/suppl/GSM714353.CHP.gz
| | Sample_series_id | GSE28846
| | Sample_data_row_count | 54675
| | |
|
GSM714354 | GPL570 |
|
PC3
|
cancer cell line
|
cell line: PC3
cancer cell type: aggressive
|
gene expression data of cancer cell line
|
| Sample_geo_accession | GSM714354
| | Sample_status | Public on Aug 10 2011
| | Sample_submission_date | Apr 25 2011
| | Sample_last_update_date | Aug 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7, OVCAR3, SKOV3, C8161, MUM2C, and LNCaP cells were grown in RPMI medium with FCS and glutamine; 231MFP cells were grown in L-15 medium with FCS and glutamine; PC3 cells were grown in F12K medium with FCS and glutamine; DU145 cells were grown in DMEM medium with FCS and glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using a Qiagen RNAeasy kit per manufactuerer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Human HG-U133Plus2 Genome Array.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Nomura
| | Sample_contact_email | DNomura@scripps.edu
| | Sample_contact_phone | 858-784-8636
| | Sample_contact_institute | the Scripps Research Institute
| | Sample_contact_address | 10550 North Torrey Pines Rd. SR107
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714354/suppl/GSM714354.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM714nnn/GSM714354/suppl/GSM714354.CHP.gz
| | Sample_series_id | GSE28846
| | Sample_data_row_count | 54675
| | |
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