Search results for the GEO ID: GSE28914  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM716451 | GPL570 |
|
Patient 1, intact skin sample
|
intact skin sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716451
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716451/suppl/GSM716451.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716452 | GPL570 |
|
Patient 1, acute wound sample
|
acute wound sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716452
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716452/suppl/GSM716452.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716453 | GPL570 |
|
Patient 1, 3rd post-operative day sample
|
3rd post-operative day sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716453
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716453/suppl/GSM716453.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716454 | GPL570 |
|
Patient 2, intact skin sample
|
intact skin sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716454
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716454/suppl/GSM716454.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716455 | GPL570 |
|
Patient 2, 3rd post-operative day sample
|
3rd post-operative day sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716455
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716455/suppl/GSM716455.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716456 | GPL570 |
|
Patient 3, intact skin sample
|
intact skin sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716456
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716456/suppl/GSM716456.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716457 | GPL570 |
|
Patient 3, acute wound sample
|
acute wound sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716457
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716457/suppl/GSM716457.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716458 | GPL570 |
|
Patient 3, 3rd post-operative day sample
|
3rd post-operative day sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716458
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716458/suppl/GSM716458.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716459 | GPL570 |
|
Patient 4, intact skin sample
|
intact skin sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716459
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716459/suppl/GSM716459.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716460 | GPL570 |
|
Patient 4, acute wound sample
|
acute wound sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716460
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716460/suppl/GSM716460.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716461 | GPL570 |
|
Patient 4, 7th post-operative day sample
|
7th post-operative day sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716461
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716461/suppl/GSM716461.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716462 | GPL570 |
|
Patient 5, intact skin sample
|
intact skin sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716462
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716462/suppl/GSM716462.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716463 | GPL570 |
|
Patient 5, acute wound sample
|
acute wound sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716463
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716463/suppl/GSM716463.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716464 | GPL570 |
|
Patient 5, 7th post-operative day sample
|
7th post-operative day sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716464
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716464/suppl/GSM716464.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716465 | GPL570 |
|
Patient 6, intact skin sample
|
intact skin sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716465
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716465/suppl/GSM716465.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716466 | GPL570 |
|
Patient 6, 3rd post-operative day sample
|
3rd post-operative day sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716466
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716466/suppl/GSM716466.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716467 | GPL570 |
|
Patient 6, 7th post-operative day sample
|
7th post-operative day sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716467
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716467/suppl/GSM716467.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716468 | GPL570 |
|
Patient 7, intact skin sample
|
intact skin sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716468
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716468/suppl/GSM716468.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716469 | GPL570 |
|
Patient 7, acute wound sample
|
acute wound sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716469
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716469/suppl/GSM716469.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716470 | GPL570 |
|
Patient 7, 3rd post-operative day sample
|
3rd post-operative day sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716470
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716470/suppl/GSM716470.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716471 | GPL570 |
|
Patient 7, 7th post-operative day sample
|
7th post-operative day sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716471
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716471/suppl/GSM716471.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716472 | GPL570 |
|
Patient 8, intact skin sample
|
intact skin sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716472
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716472/suppl/GSM716472.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716473 | GPL570 |
|
Patient 8, acute wound sample
|
acute wound sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716473
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716473/suppl/GSM716473.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716474 | GPL570 |
|
Patient 8, 3rd post-operative day sample
|
3rd post-operative day sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716474
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716474/suppl/GSM716474.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
|
GSM716475 | GPL570 |
|
Patient 8, 7th post-operative day sample
|
7th post-operative day sample
|
tissue: skin
|
Skin from split thickness skin grafting
|
| Sample_geo_accession | GSM716475
| | Sample_status | Public on Apr 29 2011
| | Sample_submission_date | Apr 28 2011
| | Sample_last_update_date | Apr 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_growth_protocol_ch1 | No treatment, clinical patient samples from normal wound healing process.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, filtered by expression, and presented as gene expression-fold changes.The results are expressed as means ± SEM. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using one-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_email | kristo.nuutila@helsinki.fi
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM716nnn/GSM716475/suppl/GSM716475.CEL.gz
| | Sample_series_id | GSE28914
| | Sample_data_row_count | 54675
| | |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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