Search results for the GEO ID: GSE28998  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM718509 | GPL570 |
|
Muscle_Trained_Female_Rep1
|
Trained biceps, female, 4h post-exercise
|
tissue: biceps
gender: female
disease state: healthy
training status: trained
subject identifier: 1324
|
PGEF-Trained_1324
Gene expression data from a young healthy human subject.
|
| Sample_geo_accession | GSM718509
| | Sample_status | Public on Dec 15 2011
| | Sample_submission_date | May 01 2011
| | Sample_last_update_date | Dec 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from frozen tissue with a polytron homogenizer (Brinkman, Westbury, NY) and Trizol reagent (Invitrogen, Rockville, MD), and purified with an RNAse kit (Qiagen, Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was used as a template for double-stranded cDNA synthesis (Superscript Double-Stranded cDNA synthesis kit, Invitrogen, Carlsbad, CA). Biotin-labeledcDNA was synthesized (EnzoBioarray High Yield RNA transcription Labeling Kit, Affymetrix).
| | Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays (Santa Clara, CA) according to manufacturer's instructions. Following hybridization, the probe arrays were washed and stained.
| | Sample_scan_protocol | The intensity of bound dye was measured with an argon laser confocal scanner (GeneArray Scanner, Agilent), and the stored images were analyzed using the GeneChip software Microarray Analysis Suite (MAS) 5.0 (Affymetrix, Santa Clara, CA).
| | Sample_data_processing | Raw intensity values of all samples were preprocessed and normalized by RMA using Bioconductor. Differentially expressed genes were tested by using an intensity-based Bayesian moderated t-statistic.
| | Sample_platform_id | GPL570
| | Sample_contact_name | GORDON,,PAUL
| | Sample_contact_email | gordonp@med.umich.edu
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 325 E Eisenhower
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48108
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718509/suppl/GSM718509.CEL.gz
| | Sample_series_id | GSE28998
| | Sample_data_row_count | 54675
| | |
|
GSM718510 | GPL570 |
|
Muscle_Trained_Female_Rep2
|
Trained biceps, female, 4h post-exercise
|
tissue: biceps
gender: female
disease state: healthy
training status: trained
subject identifier: 1333
|
PGEF-Trained_1333
Gene expression data from a young healthy human subject.
|
| Sample_geo_accession | GSM718510
| | Sample_status | Public on Dec 15 2011
| | Sample_submission_date | May 01 2011
| | Sample_last_update_date | Dec 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from frozen tissue with a polytron homogenizer (Brinkman, Westbury, NY) and Trizol reagent (Invitrogen, Rockville, MD), and purified with an RNAse kit (Qiagen, Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was used as a template for double-stranded cDNA synthesis (Superscript Double-Stranded cDNA synthesis kit, Invitrogen, Carlsbad, CA). Biotin-labeledcDNA was synthesized (EnzoBioarray High Yield RNA transcription Labeling Kit, Affymetrix).
| | Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays (Santa Clara, CA) according to manufacturer's instructions. Following hybridization, the probe arrays were washed and stained.
| | Sample_scan_protocol | The intensity of bound dye was measured with an argon laser confocal scanner (GeneArray Scanner, Agilent), and the stored images were analyzed using the GeneChip software Microarray Analysis Suite (MAS) 5.0 (Affymetrix, Santa Clara, CA).
| | Sample_data_processing | Raw intensity values of all samples were preprocessed and normalized by RMA using Bioconductor. Differentially expressed genes were tested by using an intensity-based Bayesian moderated t-statistic.
| | Sample_platform_id | GPL570
| | Sample_contact_name | GORDON,,PAUL
| | Sample_contact_email | gordonp@med.umich.edu
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 325 E Eisenhower
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48108
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718510/suppl/GSM718510.CEL.gz
| | Sample_series_id | GSE28998
| | Sample_data_row_count | 54675
| | |
|
GSM718511 | GPL570 |
|
Muscle_Trained_Female_Rep3
|
Trained biceps, female, 4h post-exercise
|
tissue: biceps
gender: female
disease state: healthy
training status: trained
subject identifier: 1340
|
PGEF-Trained_1340
Gene expression data from a young healthy human subject.
|
| Sample_geo_accession | GSM718511
| | Sample_status | Public on Dec 15 2011
| | Sample_submission_date | May 01 2011
| | Sample_last_update_date | Dec 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from frozen tissue with a polytron homogenizer (Brinkman, Westbury, NY) and Trizol reagent (Invitrogen, Rockville, MD), and purified with an RNAse kit (Qiagen, Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was used as a template for double-stranded cDNA synthesis (Superscript Double-Stranded cDNA synthesis kit, Invitrogen, Carlsbad, CA). Biotin-labeledcDNA was synthesized (EnzoBioarray High Yield RNA transcription Labeling Kit, Affymetrix).
| | Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays (Santa Clara, CA) according to manufacturer's instructions. Following hybridization, the probe arrays were washed and stained.
| | Sample_scan_protocol | The intensity of bound dye was measured with an argon laser confocal scanner (GeneArray Scanner, Agilent), and the stored images were analyzed using the GeneChip software Microarray Analysis Suite (MAS) 5.0 (Affymetrix, Santa Clara, CA).
| | Sample_data_processing | Raw intensity values of all samples were preprocessed and normalized by RMA using Bioconductor. Differentially expressed genes were tested by using an intensity-based Bayesian moderated t-statistic.
| | Sample_platform_id | GPL570
| | Sample_contact_name | GORDON,,PAUL
| | Sample_contact_email | gordonp@med.umich.edu
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 325 E Eisenhower
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48108
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718511/suppl/GSM718511.CEL.gz
| | Sample_series_id | GSE28998
| | Sample_data_row_count | 54675
| | |
|
GSM718512 | GPL570 |
|
Muscle_UnTrained_Female_Rep1
|
Untrained biceps, female, 4h post-exercise
|
tissue: biceps
gender: female
disease state: healthy
training status: untrained
subject identifier: 1324
|
PGEF-Untrained_1324
Gene expression data from a young healthy human subject.
|
| Sample_geo_accession | GSM718512
| | Sample_status | Public on Dec 15 2011
| | Sample_submission_date | May 01 2011
| | Sample_last_update_date | Dec 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from frozen tissue with a polytron homogenizer (Brinkman, Westbury, NY) and Trizol reagent (Invitrogen, Rockville, MD), and purified with an RNAse kit (Qiagen, Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was used as a template for double-stranded cDNA synthesis (Superscript Double-Stranded cDNA synthesis kit, Invitrogen, Carlsbad, CA). Biotin-labeledcDNA was synthesized (EnzoBioarray High Yield RNA transcription Labeling Kit, Affymetrix).
| | Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays (Santa Clara, CA) according to manufacturer's instructions. Following hybridization, the probe arrays were washed and stained.
| | Sample_scan_protocol | The intensity of bound dye was measured with an argon laser confocal scanner (GeneArray Scanner, Agilent), and the stored images were analyzed using the GeneChip software Microarray Analysis Suite (MAS) 5.0 (Affymetrix, Santa Clara, CA).
| | Sample_data_processing | Raw intensity values of all samples were preprocessed and normalized by RMA using Bioconductor. Differentially expressed genes were tested by using an intensity-based Bayesian moderated t-statistic.
| | Sample_platform_id | GPL570
| | Sample_contact_name | GORDON,,PAUL
| | Sample_contact_email | gordonp@med.umich.edu
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 325 E Eisenhower
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48108
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718512/suppl/GSM718512.CEL.gz
| | Sample_series_id | GSE28998
| | Sample_data_row_count | 54675
| | |
|
GSM718513 | GPL570 |
|
Muscle_UnTrained_Female_Rep2
|
Untrained biceps, female, 4h post-exercise
|
tissue: biceps
gender: female
disease state: healthy
training status: untrained
subject identifier: 1333
|
PGEF-Untrained_1333
Gene expression data from a young healthy human subject.
|
| Sample_geo_accession | GSM718513
| | Sample_status | Public on Dec 15 2011
| | Sample_submission_date | May 01 2011
| | Sample_last_update_date | Dec 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from frozen tissue with a polytron homogenizer (Brinkman, Westbury, NY) and Trizol reagent (Invitrogen, Rockville, MD), and purified with an RNAse kit (Qiagen, Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was used as a template for double-stranded cDNA synthesis (Superscript Double-Stranded cDNA synthesis kit, Invitrogen, Carlsbad, CA). Biotin-labeledcDNA was synthesized (EnzoBioarray High Yield RNA transcription Labeling Kit, Affymetrix).
| | Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays (Santa Clara, CA) according to manufacturer's instructions. Following hybridization, the probe arrays were washed and stained.
| | Sample_scan_protocol | The intensity of bound dye was measured with an argon laser confocal scanner (GeneArray Scanner, Agilent), and the stored images were analyzed using the GeneChip software Microarray Analysis Suite (MAS) 5.0 (Affymetrix, Santa Clara, CA).
| | Sample_data_processing | Raw intensity values of all samples were preprocessed and normalized by RMA using Bioconductor. Differentially expressed genes were tested by using an intensity-based Bayesian moderated t-statistic.
| | Sample_platform_id | GPL570
| | Sample_contact_name | GORDON,,PAUL
| | Sample_contact_email | gordonp@med.umich.edu
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 325 E Eisenhower
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48108
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718513/suppl/GSM718513.CEL.gz
| | Sample_series_id | GSE28998
| | Sample_data_row_count | 54675
| | |
|
GSM718514 | GPL570 |
|
Muscle_UnTrained_Female_Rep3
|
Untrained biceps, female, 4h post-exercise
|
tissue: biceps
gender: female
disease state: healthy
training status: untrained
subject identifier: 1340
|
PGEF-Untrained_1340
Gene expression data from a young healthy human subject.
|
| Sample_geo_accession | GSM718514
| | Sample_status | Public on Dec 15 2011
| | Sample_submission_date | May 01 2011
| | Sample_last_update_date | Dec 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from frozen tissue with a polytron homogenizer (Brinkman, Westbury, NY) and Trizol reagent (Invitrogen, Rockville, MD), and purified with an RNAse kit (Qiagen, Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was used as a template for double-stranded cDNA synthesis (Superscript Double-Stranded cDNA synthesis kit, Invitrogen, Carlsbad, CA). Biotin-labeledcDNA was synthesized (EnzoBioarray High Yield RNA transcription Labeling Kit, Affymetrix).
| | Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays (Santa Clara, CA) according to manufacturer's instructions. Following hybridization, the probe arrays were washed and stained.
| | Sample_scan_protocol | The intensity of bound dye was measured with an argon laser confocal scanner (GeneArray Scanner, Agilent), and the stored images were analyzed using the GeneChip software Microarray Analysis Suite (MAS) 5.0 (Affymetrix, Santa Clara, CA).
| | Sample_data_processing | Raw intensity values of all samples were preprocessed and normalized by RMA using Bioconductor. Differentially expressed genes were tested by using an intensity-based Bayesian moderated t-statistic.
| | Sample_platform_id | GPL570
| | Sample_contact_name | GORDON,,PAUL
| | Sample_contact_email | gordonp@med.umich.edu
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 325 E Eisenhower
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48108
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718514/suppl/GSM718514.CEL.gz
| | Sample_series_id | GSE28998
| | Sample_data_row_count | 54675
| | |
|
GSM718515 | GPL570 |
|
Muscle_UnTrained_Male_Rep1
|
Untrained biceps, male, 4h post-exercise
|
tissue: biceps
gender: male
disease state: healthy
training status: untrained
subject identifier: 1327
|
UnTrained_1327
Gene expression data from a young healthy human subject.
|
| Sample_geo_accession | GSM718515
| | Sample_status | Public on Dec 15 2011
| | Sample_submission_date | May 01 2011
| | Sample_last_update_date | Dec 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from frozen tissue with a polytron homogenizer (Brinkman, Westbury, NY) and Trizol reagent (Invitrogen, Rockville, MD), and purified with an RNAse kit (Qiagen, Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was used as a template for double-stranded cDNA synthesis (Superscript Double-Stranded cDNA synthesis kit, Invitrogen, Carlsbad, CA). Biotin-labeledcDNA was synthesized (EnzoBioarray High Yield RNA transcription Labeling Kit, Affymetrix).
| | Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays (Santa Clara, CA) according to manufacturer's instructions. Following hybridization, the probe arrays were washed and stained.
| | Sample_scan_protocol | The intensity of bound dye was measured with an argon laser confocal scanner (GeneArray Scanner, Agilent), and the stored images were analyzed using the GeneChip software Microarray Analysis Suite (MAS) 5.0 (Affymetrix, Santa Clara, CA).
| | Sample_data_processing | Raw intensity values of all samples were preprocessed and normalized by RMA using Bioconductor. Differentially expressed genes were tested by using an intensity-based Bayesian moderated t-statistic.
| | Sample_platform_id | GPL570
| | Sample_contact_name | GORDON,,PAUL
| | Sample_contact_email | gordonp@med.umich.edu
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 325 E Eisenhower
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48108
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718515/suppl/GSM718515.CEL.gz
| | Sample_series_id | GSE28998
| | Sample_data_row_count | 54675
| | |
|
GSM718516 | GPL570 |
|
Muscle_UnTrained_Male_Rep2
|
Untrained biceps, male, 4h post-exercise
|
tissue: biceps
gender: male
disease state: healthy
training status: untrained
subject identifier: 1330
|
UnTrained_1330-1UP
Gene expression data from a young healthy human subject.
|
| Sample_geo_accession | GSM718516
| | Sample_status | Public on Dec 15 2011
| | Sample_submission_date | May 01 2011
| | Sample_last_update_date | Dec 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from frozen tissue with a polytron homogenizer (Brinkman, Westbury, NY) and Trizol reagent (Invitrogen, Rockville, MD), and purified with an RNAse kit (Qiagen, Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was used as a template for double-stranded cDNA synthesis (Superscript Double-Stranded cDNA synthesis kit, Invitrogen, Carlsbad, CA). Biotin-labeledcDNA was synthesized (EnzoBioarray High Yield RNA transcription Labeling Kit, Affymetrix).
| | Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays (Santa Clara, CA) according to manufacturer's instructions. Following hybridization, the probe arrays were washed and stained.
| | Sample_scan_protocol | The intensity of bound dye was measured with an argon laser confocal scanner (GeneArray Scanner, Agilent), and the stored images were analyzed using the GeneChip software Microarray Analysis Suite (MAS) 5.0 (Affymetrix, Santa Clara, CA).
| | Sample_data_processing | Raw intensity values of all samples were preprocessed and normalized by RMA using Bioconductor. Differentially expressed genes were tested by using an intensity-based Bayesian moderated t-statistic.
| | Sample_platform_id | GPL570
| | Sample_contact_name | GORDON,,PAUL
| | Sample_contact_email | gordonp@med.umich.edu
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 325 E Eisenhower
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48108
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718516/suppl/GSM718516.CEL.gz
| | Sample_series_id | GSE28998
| | Sample_data_row_count | 54675
| | |
|
GSM718517 | GPL570 |
|
Muscle_Trained_Male_Rep1
|
Trained biceps, male, 4h post-exercise
|
tissue: biceps
gender: male
disease state: healthy
training status: trained
subject identifier: 1335
|
PGEF-Trained_1335
Gene expression data from a young healthy human subject.
|
| Sample_geo_accession | GSM718517
| | Sample_status | Public on Dec 15 2011
| | Sample_submission_date | May 01 2011
| | Sample_last_update_date | Dec 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from frozen tissue with a polytron homogenizer (Brinkman, Westbury, NY) and Trizol reagent (Invitrogen, Rockville, MD), and purified with an RNAse kit (Qiagen, Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was used as a template for double-stranded cDNA synthesis (Superscript Double-Stranded cDNA synthesis kit, Invitrogen, Carlsbad, CA). Biotin-labeledcDNA was synthesized (EnzoBioarray High Yield RNA transcription Labeling Kit, Affymetrix).
| | Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays (Santa Clara, CA) according to manufacturer's instructions. Following hybridization, the probe arrays were washed and stained.
| | Sample_scan_protocol | The intensity of bound dye was measured with an argon laser confocal scanner (GeneArray Scanner, Agilent), and the stored images were analyzed using the GeneChip software Microarray Analysis Suite (MAS) 5.0 (Affymetrix, Santa Clara, CA).
| | Sample_data_processing | Raw intensity values of all samples were preprocessed and normalized by RMA using Bioconductor. Differentially expressed genes were tested by using an intensity-based Bayesian moderated t-statistic.
| | Sample_platform_id | GPL570
| | Sample_contact_name | GORDON,,PAUL
| | Sample_contact_email | gordonp@med.umich.edu
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 325 E Eisenhower
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48108
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718517/suppl/GSM718517.CEL.gz
| | Sample_series_id | GSE28998
| | Sample_data_row_count | 54675
| | |
|
GSM718518 | GPL570 |
|
Muscle_UnTrained_Male_Rep3
|
Untrained biceps, male, 4h post-exercise
|
tissue: biceps
gender: male
disease state: healthy
training status: untrained
subject identifier: 1342
|
UnTrained_1342
Gene expression data from a young healthy human subject.
|
| Sample_geo_accession | GSM718518
| | Sample_status | Public on Dec 15 2011
| | Sample_submission_date | May 01 2011
| | Sample_last_update_date | Dec 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from frozen tissue with a polytron homogenizer (Brinkman, Westbury, NY) and Trizol reagent (Invitrogen, Rockville, MD), and purified with an RNAse kit (Qiagen, Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was used as a template for double-stranded cDNA synthesis (Superscript Double-Stranded cDNA synthesis kit, Invitrogen, Carlsbad, CA). Biotin-labeledcDNA was synthesized (EnzoBioarray High Yield RNA transcription Labeling Kit, Affymetrix).
| | Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays (Santa Clara, CA) according to manufacturer's instructions. Following hybridization, the probe arrays were washed and stained.
| | Sample_scan_protocol | The intensity of bound dye was measured with an argon laser confocal scanner (GeneArray Scanner, Agilent), and the stored images were analyzed using the GeneChip software Microarray Analysis Suite (MAS) 5.0 (Affymetrix, Santa Clara, CA).
| | Sample_data_processing | Raw intensity values of all samples were preprocessed and normalized by RMA using Bioconductor. Differentially expressed genes were tested by using an intensity-based Bayesian moderated t-statistic.
| | Sample_platform_id | GPL570
| | Sample_contact_name | GORDON,,PAUL
| | Sample_contact_email | gordonp@med.umich.edu
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 325 E Eisenhower
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48108
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718518/suppl/GSM718518.CEL.gz
| | Sample_series_id | GSE28998
| | Sample_data_row_count | 54675
| | |
|
GSM718519 | GPL570 |
|
Muscle_Trained_Male_Rep2
|
Trained biceps, male, 4h post-exercise
|
tissue: biceps
gender: male
disease state: healthy
training status: trained
subject identifier: 1327
|
Trained_1327
Gene expression data from a young healthy human subject.
|
| Sample_geo_accession | GSM718519
| | Sample_status | Public on Dec 15 2011
| | Sample_submission_date | May 01 2011
| | Sample_last_update_date | Dec 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from frozen tissue with a polytron homogenizer (Brinkman, Westbury, NY) and Trizol reagent (Invitrogen, Rockville, MD), and purified with an RNAse kit (Qiagen, Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was used as a template for double-stranded cDNA synthesis (Superscript Double-Stranded cDNA synthesis kit, Invitrogen, Carlsbad, CA). Biotin-labeledcDNA was synthesized (EnzoBioarray High Yield RNA transcription Labeling Kit, Affymetrix).
| | Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays (Santa Clara, CA) according to manufacturer's instructions. Following hybridization, the probe arrays were washed and stained.
| | Sample_scan_protocol | The intensity of bound dye was measured with an argon laser confocal scanner (GeneArray Scanner, Agilent), and the stored images were analyzed using the GeneChip software Microarray Analysis Suite (MAS) 5.0 (Affymetrix, Santa Clara, CA).
| | Sample_data_processing | Raw intensity values of all samples were preprocessed and normalized by RMA using Bioconductor. Differentially expressed genes were tested by using an intensity-based Bayesian moderated t-statistic.
| | Sample_platform_id | GPL570
| | Sample_contact_name | GORDON,,PAUL
| | Sample_contact_email | gordonp@med.umich.edu
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 325 E Eisenhower
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48108
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718519/suppl/GSM718519.CEL.gz
| | Sample_series_id | GSE28998
| | Sample_data_row_count | 54675
| | |
|
GSM718520 | GPL570 |
|
Muscle_Trained_Male_Rep3
|
Trained biceps, male, 4h post-exercise
|
tissue: biceps
gender: male
disease state: healthy
training status: trained
subject identifier: 1330
|
Trained_1330-1UP
Gene expression data from a young healthy human subject.
|
| Sample_geo_accession | GSM718520
| | Sample_status | Public on Dec 15 2011
| | Sample_submission_date | May 01 2011
| | Sample_last_update_date | Dec 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from frozen tissue with a polytron homogenizer (Brinkman, Westbury, NY) and Trizol reagent (Invitrogen, Rockville, MD), and purified with an RNAse kit (Qiagen, Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was used as a template for double-stranded cDNA synthesis (Superscript Double-Stranded cDNA synthesis kit, Invitrogen, Carlsbad, CA). Biotin-labeledcDNA was synthesized (EnzoBioarray High Yield RNA transcription Labeling Kit, Affymetrix).
| | Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays (Santa Clara, CA) according to manufacturer's instructions. Following hybridization, the probe arrays were washed and stained.
| | Sample_scan_protocol | The intensity of bound dye was measured with an argon laser confocal scanner (GeneArray Scanner, Agilent), and the stored images were analyzed using the GeneChip software Microarray Analysis Suite (MAS) 5.0 (Affymetrix, Santa Clara, CA).
| | Sample_data_processing | Raw intensity values of all samples were preprocessed and normalized by RMA using Bioconductor. Differentially expressed genes were tested by using an intensity-based Bayesian moderated t-statistic.
| | Sample_platform_id | GPL570
| | Sample_contact_name | GORDON,,PAUL
| | Sample_contact_email | gordonp@med.umich.edu
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 325 E Eisenhower
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48108
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718520/suppl/GSM718520.CEL.gz
| | Sample_series_id | GSE28998
| | Sample_data_row_count | 54675
| | |
|
GSM718521 | GPL570 |
|
Muscle_UnTrained_Male_Rep4
|
Untrained biceps, male, 4h post-exercise
|
tissue: biceps
gender: male
disease state: healthy
training status: untrained
subject identifier: 1335
|
PGEF-Untrained_1335
Gene expression data from a young healthy human subject.
|
| Sample_geo_accession | GSM718521
| | Sample_status | Public on Dec 15 2011
| | Sample_submission_date | May 01 2011
| | Sample_last_update_date | Dec 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from frozen tissue with a polytron homogenizer (Brinkman, Westbury, NY) and Trizol reagent (Invitrogen, Rockville, MD), and purified with an RNAse kit (Qiagen, Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was used as a template for double-stranded cDNA synthesis (Superscript Double-Stranded cDNA synthesis kit, Invitrogen, Carlsbad, CA). Biotin-labeledcDNA was synthesized (EnzoBioarray High Yield RNA transcription Labeling Kit, Affymetrix).
| | Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays (Santa Clara, CA) according to manufacturer's instructions. Following hybridization, the probe arrays were washed and stained.
| | Sample_scan_protocol | The intensity of bound dye was measured with an argon laser confocal scanner (GeneArray Scanner, Agilent), and the stored images were analyzed using the GeneChip software Microarray Analysis Suite (MAS) 5.0 (Affymetrix, Santa Clara, CA).
| | Sample_data_processing | Raw intensity values of all samples were preprocessed and normalized by RMA using Bioconductor. Differentially expressed genes were tested by using an intensity-based Bayesian moderated t-statistic.
| | Sample_platform_id | GPL570
| | Sample_contact_name | GORDON,,PAUL
| | Sample_contact_email | gordonp@med.umich.edu
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 325 E Eisenhower
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48108
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718521/suppl/GSM718521.CEL.gz
| | Sample_series_id | GSE28998
| | Sample_data_row_count | 54675
| | |
|
GSM718522 | GPL570 |
|
Muscle_Trained_Male_Rep4
|
Trained biceps, male, 4h post-exercise
|
tissue: biceps
gender: male
disease state: healthy
training status: trained
subject identifier: 1342
|
Trained_1342
Gene expression data from a young healthy human subject.
|
| Sample_geo_accession | GSM718522
| | Sample_status | Public on Dec 15 2011
| | Sample_submission_date | May 01 2011
| | Sample_last_update_date | Dec 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from frozen tissue with a polytron homogenizer (Brinkman, Westbury, NY) and Trizol reagent (Invitrogen, Rockville, MD), and purified with an RNAse kit (Qiagen, Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was used as a template for double-stranded cDNA synthesis (Superscript Double-Stranded cDNA synthesis kit, Invitrogen, Carlsbad, CA). Biotin-labeledcDNA was synthesized (EnzoBioarray High Yield RNA transcription Labeling Kit, Affymetrix).
| | Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays (Santa Clara, CA) according to manufacturer's instructions. Following hybridization, the probe arrays were washed and stained.
| | Sample_scan_protocol | The intensity of bound dye was measured with an argon laser confocal scanner (GeneArray Scanner, Agilent), and the stored images were analyzed using the GeneChip software Microarray Analysis Suite (MAS) 5.0 (Affymetrix, Santa Clara, CA).
| | Sample_data_processing | Raw intensity values of all samples were preprocessed and normalized by RMA using Bioconductor. Differentially expressed genes were tested by using an intensity-based Bayesian moderated t-statistic.
| | Sample_platform_id | GPL570
| | Sample_contact_name | GORDON,,PAUL
| | Sample_contact_email | gordonp@med.umich.edu
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 325 E Eisenhower
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48108
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718522/suppl/GSM718522.CEL.gz
| | Sample_series_id | GSE28998
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
