Search results for the GEO ID: GSE29004  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM718689 | GPL1355 |
|
Cerebellum, saline control, biological rep1
|
Rat pups treated with saline, cerebellum
|
strain: Wistar
gender: male
tissue: cerebellum
treatment: saline
|
ACRL_CBM__Control_A
Gene expression data from saline-treated rat pups.
|
| Sample_geo_accession | GSM718689
| | Sample_status | Public on Feb 08 2012
| | Sample_submission_date | May 02 2011
| | Sample_last_update_date | Feb 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 25-day-old rats were treated with either solvent or acrylamide daily (30 mg/kg) via oral gavage. Tissues (cerebellum, right and left sciatic nerves, and spinal cord) were collected 21 days after treatment.
| | Sample_growth_protocol_ch1 | 25-day-old male Wistar rats were housed two per cage and maintained in a 12 h light / 12 h dark cycle with food (Purina 5001) and water provided ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The Qiagen RNeasy Lipid Tissue Midi-kit was used for total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization protocol, and GeneChip Fluidics Station 450 default protocol were used. GeneChip Rat Genome 230 2.0 arrays were used.
| | Sample_scan_protocol | Affymetrix GenChip Scanner 3000 default parameters were used.
| | Sample_data_processing = Image analysis, scaling (TGT | 500), and probeset-level data analysis was performed using default parameters in GCOS v1.1.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ameeta,,Agarwal
| | Sample_contact_email | aagarwal@olemiss.edu
| | Sample_contact_phone | 662-915-1218
| | Sample_contact_fax | 662-915-7062
| | Sample_contact_department | National Center for Natural Products Research
| | Sample_contact_institute | University of Mississippi
| | Sample_contact_address | NCNPR, Room 2049
| | Sample_contact_city | University
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 38677
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718689/suppl/GSM718689.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718689/suppl/GSM718689.CHP.gz
| | Sample_series_id | GSE29004
| | Sample_data_row_count | 31099
| | |
|
GSM718690 | GPL1355 |
|
Cerebellum, saline control, biological rep2
|
Rat pups treated with saline, cerebellum
|
strain: Wistar
gender: male
tissue: cerebellum
treatment: saline
|
ACRL_CBM__Control_B
Gene expression data from saline-treated rat pups.
|
| Sample_geo_accession | GSM718690
| | Sample_status | Public on Feb 08 2012
| | Sample_submission_date | May 02 2011
| | Sample_last_update_date | Feb 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 25-day-old rats were treated with either solvent or acrylamide daily (30 mg/kg) via oral gavage. Tissues (cerebellum, right and left sciatic nerves, and spinal cord) were collected 21 days after treatment.
| | Sample_growth_protocol_ch1 | 25-day-old male Wistar rats were housed two per cage and maintained in a 12 h light / 12 h dark cycle with food (Purina 5001) and water provided ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The Qiagen RNeasy Lipid Tissue Midi-kit was used for total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization protocol, and GeneChip Fluidics Station 450 default protocol were used. GeneChip Rat Genome 230 2.0 arrays were used.
| | Sample_scan_protocol | Affymetrix GenChip Scanner 3000 default parameters were used.
| | Sample_data_processing = Image analysis, scaling (TGT | 500), and probeset-level data analysis was performed using default parameters in GCOS v1.1.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ameeta,,Agarwal
| | Sample_contact_email | aagarwal@olemiss.edu
| | Sample_contact_phone | 662-915-1218
| | Sample_contact_fax | 662-915-7062
| | Sample_contact_department | National Center for Natural Products Research
| | Sample_contact_institute | University of Mississippi
| | Sample_contact_address | NCNPR, Room 2049
| | Sample_contact_city | University
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 38677
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718690/suppl/GSM718690.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718690/suppl/GSM718690.CHP.gz
| | Sample_series_id | GSE29004
| | Sample_data_row_count | 31099
| | |
|
GSM718691 | GPL1355 |
|
Cerebellum, acrylamide treated, biological rep1
|
Rat pups treated with acrylamide, cerebellum
|
strain: Wistar
gender: male
tissue: cerebellum
treatment: acrylamide
|
ACRL_CBM__Treated_A
Gene expression data from acrylamide-treated rat pups.
|
| Sample_geo_accession | GSM718691
| | Sample_status | Public on Feb 08 2012
| | Sample_submission_date | May 02 2011
| | Sample_last_update_date | Feb 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 25-day-old rats were treated with either solvent or acrylamide daily (30 mg/kg) via oral gavage. Tissues (cerebellum, right and left sciatic nerves, and spinal cord) were collected 21 days after treatment.
| | Sample_growth_protocol_ch1 | 25-day-old male Wistar rats were housed two per cage and maintained in a 12 h light / 12 h dark cycle with food (Purina 5001) and water provided ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The Qiagen RNeasy Lipid Tissue Midi-kit was used for total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization protocol, and GeneChip Fluidics Station 450 default protocol were used. GeneChip Rat Genome 230 2.0 arrays were used.
| | Sample_scan_protocol | Affymetrix GenChip Scanner 3000 default parameters were used.
| | Sample_data_processing = Image analysis, scaling (TGT | 500), and probeset-level data analysis was performed using default parameters in GCOS v1.1.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ameeta,,Agarwal
| | Sample_contact_email | aagarwal@olemiss.edu
| | Sample_contact_phone | 662-915-1218
| | Sample_contact_fax | 662-915-7062
| | Sample_contact_department | National Center for Natural Products Research
| | Sample_contact_institute | University of Mississippi
| | Sample_contact_address | NCNPR, Room 2049
| | Sample_contact_city | University
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 38677
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718691/suppl/GSM718691.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718691/suppl/GSM718691.CHP.gz
| | Sample_series_id | GSE29004
| | Sample_data_row_count | 31099
| | |
|
GSM718692 | GPL1355 |
|
Cerebellum, acrylamide treated, biological rep2
|
Rat pups treated with acrylamide, cerebellum
|
strain: Wistar
gender: male
tissue: cerebellum
treatment: acrylamide
|
ACRL_CBM__Treated_B
Gene expression data from acrylamide-treated rat pups.
|
| Sample_geo_accession | GSM718692
| | Sample_status | Public on Feb 08 2012
| | Sample_submission_date | May 02 2011
| | Sample_last_update_date | Feb 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 25-day-old rats were treated with either solvent or acrylamide daily (30 mg/kg) via oral gavage. Tissues (cerebellum, right and left sciatic nerves, and spinal cord) were collected 21 days after treatment.
| | Sample_growth_protocol_ch1 | 25-day-old male Wistar rats were housed two per cage and maintained in a 12 h light / 12 h dark cycle with food (Purina 5001) and water provided ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The Qiagen RNeasy Lipid Tissue Midi-kit was used for total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization protocol, and GeneChip Fluidics Station 450 default protocol were used. GeneChip Rat Genome 230 2.0 arrays were used.
| | Sample_scan_protocol | Affymetrix GenChip Scanner 3000 default parameters were used.
| | Sample_data_processing = Image analysis, scaling (TGT | 500), and probeset-level data analysis was performed using default parameters in GCOS v1.1.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ameeta,,Agarwal
| | Sample_contact_email | aagarwal@olemiss.edu
| | Sample_contact_phone | 662-915-1218
| | Sample_contact_fax | 662-915-7062
| | Sample_contact_department | National Center for Natural Products Research
| | Sample_contact_institute | University of Mississippi
| | Sample_contact_address | NCNPR, Room 2049
| | Sample_contact_city | University
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 38677
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718692/suppl/GSM718692.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718692/suppl/GSM718692.CHP.gz
| | Sample_series_id | GSE29004
| | Sample_data_row_count | 31099
| | |
|
GSM718693 | GPL1355 |
|
Spinal cord, saline control, biological rep1
|
Rat pups treated with saline, spinal cord
|
strain: Wistar
gender: male
tissue: spinal cord
treatment: saline
|
ACRL_SC__Control_A
Gene expression data from saline-treated rat pups.
|
| Sample_geo_accession | GSM718693
| | Sample_status | Public on Feb 08 2012
| | Sample_submission_date | May 02 2011
| | Sample_last_update_date | Feb 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 25-day-old rats were treated with either solvent or acrylamide daily (30 mg/kg) via oral gavage. Tissues (cerebellum, right and left sciatic nerves, and spinal cord) were collected 21 days after treatment.
| | Sample_growth_protocol_ch1 | 25-day-old male Wistar rats were housed two per cage and maintained in a 12 h light / 12 h dark cycle with food (Purina 5001) and water provided ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The Qiagen RNeasy Lipid Tissue Midi-kit was used for total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization protocol, and GeneChip Fluidics Station 450 default protocol were used. GeneChip Rat Genome 230 2.0 arrays were used.
| | Sample_scan_protocol | Affymetrix GenChip Scanner 3000 default parameters were used.
| | Sample_data_processing = Image analysis, scaling (TGT | 500), and probeset-level data analysis was performed using default parameters in GCOS v1.1.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ameeta,,Agarwal
| | Sample_contact_email | aagarwal@olemiss.edu
| | Sample_contact_phone | 662-915-1218
| | Sample_contact_fax | 662-915-7062
| | Sample_contact_department | National Center for Natural Products Research
| | Sample_contact_institute | University of Mississippi
| | Sample_contact_address | NCNPR, Room 2049
| | Sample_contact_city | University
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 38677
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718693/suppl/GSM718693.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718693/suppl/GSM718693.CHP.gz
| | Sample_series_id | GSE29004
| | Sample_data_row_count | 31099
| | |
|
GSM718694 | GPL1355 |
|
Spinal cord, saline control, biological rep2
|
Rat pups treated with saline, spinal cord
|
strain: Wistar
gender: male
tissue: spinal cord
treatment: saline
|
ACRL_SC__Control_B
Gene expression data from saline-treated rat pups.
|
| Sample_geo_accession | GSM718694
| | Sample_status | Public on Feb 08 2012
| | Sample_submission_date | May 02 2011
| | Sample_last_update_date | Feb 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 25-day-old rats were treated with either solvent or acrylamide daily (30 mg/kg) via oral gavage. Tissues (cerebellum, right and left sciatic nerves, and spinal cord) were collected 21 days after treatment.
| | Sample_growth_protocol_ch1 | 25-day-old male Wistar rats were housed two per cage and maintained in a 12 h light / 12 h dark cycle with food (Purina 5001) and water provided ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The Qiagen RNeasy Lipid Tissue Midi-kit was used for total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization protocol, and GeneChip Fluidics Station 450 default protocol were used. GeneChip Rat Genome 230 2.0 arrays were used.
| | Sample_scan_protocol | Affymetrix GenChip Scanner 3000 default parameters were used.
| | Sample_data_processing = Image analysis, scaling (TGT | 500), and probeset-level data analysis was performed using default parameters in GCOS v1.1.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ameeta,,Agarwal
| | Sample_contact_email | aagarwal@olemiss.edu
| | Sample_contact_phone | 662-915-1218
| | Sample_contact_fax | 662-915-7062
| | Sample_contact_department | National Center for Natural Products Research
| | Sample_contact_institute | University of Mississippi
| | Sample_contact_address | NCNPR, Room 2049
| | Sample_contact_city | University
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 38677
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718694/suppl/GSM718694.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718694/suppl/GSM718694.CHP.gz
| | Sample_series_id | GSE29004
| | Sample_data_row_count | 31099
| | |
|
GSM718695 | GPL1355 |
|
Spinal cord, acrylamide treated, biological rep1
|
Rat pups treated with acrylamide, spinal cord
|
strain: Wistar
gender: male
tissue: spinal cord
treatment: acrylamide
|
ACRL_SC__Treated_A
Gene expression data from acrylamide-treated rat pups.
|
| Sample_geo_accession | GSM718695
| | Sample_status | Public on Feb 08 2012
| | Sample_submission_date | May 02 2011
| | Sample_last_update_date | Feb 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 25-day-old rats were treated with either solvent or acrylamide daily (30 mg/kg) via oral gavage. Tissues (cerebellum, right and left sciatic nerves, and spinal cord) were collected 21 days after treatment.
| | Sample_growth_protocol_ch1 | 25-day-old male Wistar rats were housed two per cage and maintained in a 12 h light / 12 h dark cycle with food (Purina 5001) and water provided ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The Qiagen RNeasy Lipid Tissue Midi-kit was used for total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization protocol, and GeneChip Fluidics Station 450 default protocol were used. GeneChip Rat Genome 230 2.0 arrays were used.
| | Sample_scan_protocol | Affymetrix GenChip Scanner 3000 default parameters were used.
| | Sample_data_processing = Image analysis, scaling (TGT | 500), and probeset-level data analysis was performed using default parameters in GCOS v1.1.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ameeta,,Agarwal
| | Sample_contact_email | aagarwal@olemiss.edu
| | Sample_contact_phone | 662-915-1218
| | Sample_contact_fax | 662-915-7062
| | Sample_contact_department | National Center for Natural Products Research
| | Sample_contact_institute | University of Mississippi
| | Sample_contact_address | NCNPR, Room 2049
| | Sample_contact_city | University
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 38677
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718695/suppl/GSM718695.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718695/suppl/GSM718695.CHP.gz
| | Sample_series_id | GSE29004
| | Sample_data_row_count | 31099
| | |
|
GSM718696 | GPL1355 |
|
Spinal cord, acrylamide treated, biological rep2
|
Rat pups treated with acrylamide, spinal cord
|
strain: Wistar
gender: male
tissue: spinal cord
treatment: acrylamide
|
ACRL_SC__Treated_B
Gene expression data from acrylamide-treated rat pups.
|
| Sample_geo_accession | GSM718696
| | Sample_status | Public on Feb 08 2012
| | Sample_submission_date | May 02 2011
| | Sample_last_update_date | Feb 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 25-day-old rats were treated with either solvent or acrylamide daily (30 mg/kg) via oral gavage. Tissues (cerebellum, right and left sciatic nerves, and spinal cord) were collected 21 days after treatment.
| | Sample_growth_protocol_ch1 | 25-day-old male Wistar rats were housed two per cage and maintained in a 12 h light / 12 h dark cycle with food (Purina 5001) and water provided ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The Qiagen RNeasy Lipid Tissue Midi-kit was used for total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization protocol, and GeneChip Fluidics Station 450 default protocol were used. GeneChip Rat Genome 230 2.0 arrays were used.
| | Sample_scan_protocol | Affymetrix GenChip Scanner 3000 default parameters were used.
| | Sample_data_processing = Image analysis, scaling (TGT | 500), and probeset-level data analysis was performed using default parameters in GCOS v1.1.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ameeta,,Agarwal
| | Sample_contact_email | aagarwal@olemiss.edu
| | Sample_contact_phone | 662-915-1218
| | Sample_contact_fax | 662-915-7062
| | Sample_contact_department | National Center for Natural Products Research
| | Sample_contact_institute | University of Mississippi
| | Sample_contact_address | NCNPR, Room 2049
| | Sample_contact_city | University
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 38677
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718696/suppl/GSM718696.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718696/suppl/GSM718696.CHP.gz
| | Sample_series_id | GSE29004
| | Sample_data_row_count | 31099
| | |
|
GSM718697 | GPL1355 |
|
Sciatic nerve, saline control, biological rep1
|
Rat pups treated with saline, sciatic nerve
|
strain: Wistar
gender: male
tissue: sciatic nerve
treatment: saline
|
ACRL_SN__Control_A
Gene expression data from saline-treated rat pups.
|
| Sample_geo_accession | GSM718697
| | Sample_status | Public on Feb 08 2012
| | Sample_submission_date | May 02 2011
| | Sample_last_update_date | Feb 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 25-day-old rats were treated with either solvent or acrylamide daily (30 mg/kg) via oral gavage. Tissues (cerebellum, right and left sciatic nerves, and spinal cord) were collected 21 days after treatment.
| | Sample_growth_protocol_ch1 | 25-day-old male Wistar rats were housed two per cage and maintained in a 12 h light / 12 h dark cycle with food (Purina 5001) and water provided ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The Qiagen RNeasy Lipid Tissue Midi-kit was used for total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization protocol, and GeneChip Fluidics Station 450 default protocol were used. GeneChip Rat Genome 230 2.0 arrays were used.
| | Sample_scan_protocol | Affymetrix GenChip Scanner 3000 default parameters were used.
| | Sample_data_processing = Image analysis, scaling (TGT | 500), and probeset-level data analysis was performed using default parameters in GCOS v1.1.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ameeta,,Agarwal
| | Sample_contact_email | aagarwal@olemiss.edu
| | Sample_contact_phone | 662-915-1218
| | Sample_contact_fax | 662-915-7062
| | Sample_contact_department | National Center for Natural Products Research
| | Sample_contact_institute | University of Mississippi
| | Sample_contact_address | NCNPR, Room 2049
| | Sample_contact_city | University
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 38677
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718697/suppl/GSM718697.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718697/suppl/GSM718697.CHP.gz
| | Sample_series_id | GSE29004
| | Sample_data_row_count | 31099
| | |
|
GSM718698 | GPL1355 |
|
Sciatic nerve, saline control, biological rep2
|
Rat pups treated with saline, sciatic nerve
|
strain: Wistar
gender: male
tissue: sciatic nerve
treatment: saline
|
ACRL_SN__Control_B
Gene expression data from saline-treated rat pups.
|
| Sample_geo_accession | GSM718698
| | Sample_status | Public on Feb 08 2012
| | Sample_submission_date | May 02 2011
| | Sample_last_update_date | Feb 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 25-day-old rats were treated with either solvent or acrylamide daily (30 mg/kg) via oral gavage. Tissues (cerebellum, right and left sciatic nerves, and spinal cord) were collected 21 days after treatment.
| | Sample_growth_protocol_ch1 | 25-day-old male Wistar rats were housed two per cage and maintained in a 12 h light / 12 h dark cycle with food (Purina 5001) and water provided ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The Qiagen RNeasy Lipid Tissue Midi-kit was used for total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization protocol, and GeneChip Fluidics Station 450 default protocol were used. GeneChip Rat Genome 230 2.0 arrays were used.
| | Sample_scan_protocol | Affymetrix GenChip Scanner 3000 default parameters were used.
| | Sample_data_processing = Image analysis, scaling (TGT | 500), and probeset-level data analysis was performed using default parameters in GCOS v1.1.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ameeta,,Agarwal
| | Sample_contact_email | aagarwal@olemiss.edu
| | Sample_contact_phone | 662-915-1218
| | Sample_contact_fax | 662-915-7062
| | Sample_contact_department | National Center for Natural Products Research
| | Sample_contact_institute | University of Mississippi
| | Sample_contact_address | NCNPR, Room 2049
| | Sample_contact_city | University
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 38677
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718698/suppl/GSM718698.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718698/suppl/GSM718698.CHP.gz
| | Sample_series_id | GSE29004
| | Sample_data_row_count | 31099
| | |
|
GSM718699 | GPL1355 |
|
Sciatic nerve, acrylamide treated, biological rep1
|
Rat pups treated with acrylamide, sciatic nerve
|
strain: Wistar
gender: male
tissue: sciatic nerve
treatment: acrylamide
|
ACRL_SN__Treated_A
Gene expression data from acrylamide-treated rat pups.
|
| Sample_geo_accession | GSM718699
| | Sample_status | Public on Feb 08 2012
| | Sample_submission_date | May 02 2011
| | Sample_last_update_date | Feb 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 25-day-old rats were treated with either solvent or acrylamide daily (30 mg/kg) via oral gavage. Tissues (cerebellum, right and left sciatic nerves, and spinal cord) were collected 21 days after treatment.
| | Sample_growth_protocol_ch1 | 25-day-old male Wistar rats were housed two per cage and maintained in a 12 h light / 12 h dark cycle with food (Purina 5001) and water provided ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The Qiagen RNeasy Lipid Tissue Midi-kit was used for total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization protocol, and GeneChip Fluidics Station 450 default protocol were used. GeneChip Rat Genome 230 2.0 arrays were used.
| | Sample_scan_protocol | Affymetrix GenChip Scanner 3000 default parameters were used.
| | Sample_data_processing = Image analysis, scaling (TGT | 500), and probeset-level data analysis was performed using default parameters in GCOS v1.1.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ameeta,,Agarwal
| | Sample_contact_email | aagarwal@olemiss.edu
| | Sample_contact_phone | 662-915-1218
| | Sample_contact_fax | 662-915-7062
| | Sample_contact_department | National Center for Natural Products Research
| | Sample_contact_institute | University of Mississippi
| | Sample_contact_address | NCNPR, Room 2049
| | Sample_contact_city | University
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 38677
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718699/suppl/GSM718699.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718699/suppl/GSM718699.CHP.gz
| | Sample_series_id | GSE29004
| | Sample_data_row_count | 31099
| | |
|
GSM718700 | GPL1355 |
|
Sciatic nerve, acrylamide treated, biological rep2
|
Rat pups treated with acrylamide, sciatic nerve
|
strain: Wistar
gender: male
tissue: sciatic nerve
treatment: acrylamide
|
ACRL_SN__Treated_B
Gene expression data from acrylamide-treated rat pups.
|
| Sample_geo_accession | GSM718700
| | Sample_status | Public on Feb 08 2012
| | Sample_submission_date | May 02 2011
| | Sample_last_update_date | Feb 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 25-day-old rats were treated with either solvent or acrylamide daily (30 mg/kg) via oral gavage. Tissues (cerebellum, right and left sciatic nerves, and spinal cord) were collected 21 days after treatment.
| | Sample_growth_protocol_ch1 | 25-day-old male Wistar rats were housed two per cage and maintained in a 12 h light / 12 h dark cycle with food (Purina 5001) and water provided ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The Qiagen RNeasy Lipid Tissue Midi-kit was used for total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization protocol, and GeneChip Fluidics Station 450 default protocol were used. GeneChip Rat Genome 230 2.0 arrays were used.
| | Sample_scan_protocol | Affymetrix GenChip Scanner 3000 default parameters were used.
| | Sample_data_processing = Image analysis, scaling (TGT | 500), and probeset-level data analysis was performed using default parameters in GCOS v1.1.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ameeta,,Agarwal
| | Sample_contact_email | aagarwal@olemiss.edu
| | Sample_contact_phone | 662-915-1218
| | Sample_contact_fax | 662-915-7062
| | Sample_contact_department | National Center for Natural Products Research
| | Sample_contact_institute | University of Mississippi
| | Sample_contact_address | NCNPR, Room 2049
| | Sample_contact_city | University
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 38677
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718700/suppl/GSM718700.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM718nnn/GSM718700/suppl/GSM718700.CHP.gz
| | Sample_series_id | GSE29004
| | Sample_data_row_count | 31099
| | |
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