Search results for the GEO ID: GSE29060  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM720199 | GPL570 |
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Aza 1 U133 Plus 2.0
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cell culture: Aza treatment
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cell line: HT-29
cell type: colorectal adenocarcinoma
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Gene expression data from HT-29 cells
|
| Sample_geo_accession | GSM720199
| | Sample_status | Public on Jan 01 2012
| | Sample_submission_date | May 04 2011
| | Sample_last_update_date | Jan 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini extraction of total RNA was performed according to the manufacturer instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 3 microg total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| | Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wichmann,,Barna
| | Sample_contact_email | wwbarna@yahoo.com
| | Sample_contact_institute | SOTE
| | Sample_contact_address | Szentkirály
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | 1081
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM720nnn/GSM720199/suppl/GSM720199.CEL.gz
| | Sample_series_id | GSE29060
| | Sample_data_row_count | 54675
| | |
|
GSM720200 | GPL570 |
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Aza 2 U133 Plus 2.0
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cell culture: Aza treatment
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cell line: HT-29
cell type: colorectal adenocarcinoma
|
Gene expression data from HT-29 cells
|
| Sample_geo_accession | GSM720200
| | Sample_status | Public on Jan 01 2012
| | Sample_submission_date | May 04 2011
| | Sample_last_update_date | Jan 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini extraction of total RNA was performed according to the manufacturer instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 3 microg total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| | Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wichmann,,Barna
| | Sample_contact_email | wwbarna@yahoo.com
| | Sample_contact_institute | SOTE
| | Sample_contact_address | Szentkirály
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | 1081
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM720nnn/GSM720200/suppl/GSM720200.CEL.gz
| | Sample_series_id | GSE29060
| | Sample_data_row_count | 54675
| | |
|
GSM720201 | GPL570 |
|
Aza 3 U133 Plus 2.0
|
cell culture: Aza treatment
|
cell line: HT-29
cell type: colorectal adenocarcinoma
|
Gene expression data from HT-29 cells
|
| Sample_geo_accession | GSM720201
| | Sample_status | Public on Jan 01 2012
| | Sample_submission_date | May 04 2011
| | Sample_last_update_date | Jan 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini extraction of total RNA was performed according to the manufacturer instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 3 microg total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| | Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wichmann,,Barna
| | Sample_contact_email | wwbarna@yahoo.com
| | Sample_contact_institute | SOTE
| | Sample_contact_address | Szentkirály
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | 1081
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM720nnn/GSM720201/suppl/GSM720201.CEL.gz
| | Sample_series_id | GSE29060
| | Sample_data_row_count | 54675
| | |
|
GSM720202 | GPL570 |
|
EcCo1 U133 Plus 2.0
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cell culture: Control HT29
|
cell line: HT-29
cell type: colorectal adenocarcinoma
|
Gene expression data from HT-29 cells
|
| Sample_geo_accession | GSM720202
| | Sample_status | Public on Jan 01 2012
| | Sample_submission_date | May 04 2011
| | Sample_last_update_date | Jan 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini extraction of total RNA was performed according to the manufacturer instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 3 microg total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| | Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wichmann,,Barna
| | Sample_contact_email | wwbarna@yahoo.com
| | Sample_contact_institute | SOTE
| | Sample_contact_address | Szentkirály
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | 1081
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM720nnn/GSM720202/suppl/GSM720202.CEL.gz
| | Sample_series_id | GSE29060
| | Sample_data_row_count | 54675
| | |
|
GSM720203 | GPL570 |
|
EcCo2 U133 Plus 2.0
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cell culture: Control HT29
|
cell line: HT-29
cell type: colorectal adenocarcinoma
|
Gene expression data from HT-29 cells
|
| Sample_geo_accession | GSM720203
| | Sample_status | Public on Jan 01 2012
| | Sample_submission_date | May 04 2011
| | Sample_last_update_date | Jan 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini extraction of total RNA was performed according to the manufacturer instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 3 microg total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| | Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wichmann,,Barna
| | Sample_contact_email | wwbarna@yahoo.com
| | Sample_contact_institute | SOTE
| | Sample_contact_address | Szentkirály
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | 1081
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM720nnn/GSM720203/suppl/GSM720203.CEL.gz
| | Sample_series_id | GSE29060
| | Sample_data_row_count | 54675
| | |
|
GSM720204 | GPL570 |
|
EcCo3 U133 Plus 2.0
|
cell culture: Control HT29
|
cell line: HT-29
cell type: colorectal adenocarcinoma
|
Gene expression data from HT-29 cells
|
| Sample_geo_accession | GSM720204
| | Sample_status | Public on Jan 01 2012
| | Sample_submission_date | May 04 2011
| | Sample_last_update_date | Jan 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini extraction of total RNA was performed according to the manufacturer instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 3 microg total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| | Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wichmann,,Barna
| | Sample_contact_email | wwbarna@yahoo.com
| | Sample_contact_institute | SOTE
| | Sample_contact_address | Szentkirály
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | 1081
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM720nnn/GSM720204/suppl/GSM720204.CEL.gz
| | Sample_series_id | GSE29060
| | Sample_data_row_count | 54675
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