Search results for the GEO ID: GSE29133  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM721271 | GPL570 |
|
ATII COPD rep1
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IEP32-EpCAM(hi)T1a(neg)
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tissue: human distal lung
age: 59 years old
gender: male
smoking history (pack-years): 30
smoking cessation: 15 yr
fev1/fvc: 69.4 %
fev1 (%pred): 106.7
number: IEP32
disease state: COPD
cell type: Alveolar epithelial type II
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| Sample_geo_accession | GSM721271
| | Sample_status | Public on Oct 11 2012
| | Sample_submission_date | May 08 2011
| | Sample_last_update_date | Oct 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using miRNeasy mini kit (Qiagen, Tokyo, Japan)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 100 ng total RNA according to the manufacturer's protocol using GeneChip 3' IVT Express Kit (Affymetrix).
| | Sample_hyb_protocol | The purified and fragmented cRNA (12.5 μg) was hybridized to GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix). The array was incubated for 16 hours at 45°C, then automatically washed and stained with GeneChip Hybridization, Wash and Stain Kit (Affymetrix).
| | Sample_scan_protocol | The probe array was scanned using a GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix Expression Console (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hiroshi,,Kubo
| | Sample_contact_email | hkubo@med.tohoku.ac.jp
| | Sample_contact_phone | +81-22-717-7184
| | Sample_contact_fax | +81-22-717-7576
| | Sample_contact_department | Department of Advanced Preventive Medicine for Infectious Disease, and Regenerative Medicine
| | Sample_contact_institute | Tohoku University Graduate School of Medicine
| | Sample_contact_address | 2-1 Seiryomachi, Aobaku
| | Sample_contact_city | Sendai
| | Sample_contact_state | Miyagi
| | Sample_contact_zip/postal_code | 980-8575
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.apmid.med.tohoku.ac.jp/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721271/suppl/GSM721271_1_ATII_cells_COPD_1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721271/suppl/GSM721271_ATII_cells_COPD_1.CHP.gz
| | Sample_series_id | GSE29133
| | Sample_data_row_count | 54675
| | |
|
GSM721272 | GPL570 |
|
ATII COPD rep2
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IEP35-EpCAM(hi)T1a(neg)
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tissue: human distal lung
age: 69 years old
gender: male
smoking history (pack-years): 40
smoking cessation: 1 yr
fev1/fvc: 58.3 %
fev1 (% pred): 64.9
number: IEP35
disease state: COPD
cell type: Alveolar epithelial type II
|
|
| Sample_geo_accession | GSM721272
| | Sample_status | Public on Oct 11 2012
| | Sample_submission_date | May 08 2011
| | Sample_last_update_date | Oct 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using miRNeasy mini kit (Qiagen, Tokyo, Japan)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 100 ng total RNA according to the manufacturer's protocol using GeneChip 3' IVT Express Kit (Affymetrix).
| | Sample_hyb_protocol | The purified and fragmented cRNA (12.5 μg) was hybridized to GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix). The array was incubated for 16 hours at 45°C, then automatically washed and stained with GeneChip Hybridization, Wash and Stain Kit (Affymetrix).
| | Sample_scan_protocol | The probe array was scanned using a GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix Expression Console (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hiroshi,,Kubo
| | Sample_contact_email | hkubo@med.tohoku.ac.jp
| | Sample_contact_phone | +81-22-717-7184
| | Sample_contact_fax | +81-22-717-7576
| | Sample_contact_department | Department of Advanced Preventive Medicine for Infectious Disease, and Regenerative Medicine
| | Sample_contact_institute | Tohoku University Graduate School of Medicine
| | Sample_contact_address | 2-1 Seiryomachi, Aobaku
| | Sample_contact_city | Sendai
| | Sample_contact_state | Miyagi
| | Sample_contact_zip/postal_code | 980-8575
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.apmid.med.tohoku.ac.jp/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721272/suppl/GSM721272_ATII_cells_COPD_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721272/suppl/GSM721272_ATII_cells_COPD_2.CHP.gz
| | Sample_series_id | GSE29133
| | Sample_data_row_count | 54675
| | |
|
GSM721273 | GPL570 |
|
ATII COPD rep3
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H47-EpCAM(hi)T1a(neg)
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tissue: human distal lung
age: 70 years old
gender: male
smoking history (pack-years): 127.5
smoking cessation: 0 yr
fev1/fvc: 51.3 %
fev1 (% pred): 78.0
number: H47
disease state: COPD
cell type: Alveolar epithelial type II
|
|
| Sample_geo_accession | GSM721273
| | Sample_status | Public on Oct 11 2012
| | Sample_submission_date | May 08 2011
| | Sample_last_update_date | Oct 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using miRNeasy mini kit (Qiagen, Tokyo, Japan)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 100 ng total RNA according to the manufacturer's protocol using GeneChip 3' IVT Express Kit (Affymetrix).
| | Sample_hyb_protocol | The purified and fragmented cRNA (12.5 μg) was hybridized to GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix). The array was incubated for 16 hours at 45°C, then automatically washed and stained with GeneChip Hybridization, Wash and Stain Kit (Affymetrix).
| | Sample_scan_protocol | The probe array was scanned using a GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix Expression Console (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hiroshi,,Kubo
| | Sample_contact_email | hkubo@med.tohoku.ac.jp
| | Sample_contact_phone | +81-22-717-7184
| | Sample_contact_fax | +81-22-717-7576
| | Sample_contact_department | Department of Advanced Preventive Medicine for Infectious Disease, and Regenerative Medicine
| | Sample_contact_institute | Tohoku University Graduate School of Medicine
| | Sample_contact_address | 2-1 Seiryomachi, Aobaku
| | Sample_contact_city | Sendai
| | Sample_contact_state | Miyagi
| | Sample_contact_zip/postal_code | 980-8575
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.apmid.med.tohoku.ac.jp/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721273/suppl/GSM721273_ATII_cells_COPD_3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721273/suppl/GSM721273_ATII_cells_COPD_3.CHP.gz
| | Sample_series_id | GSE29133
| | Sample_data_row_count | 54675
| | |
|
GSM721274 | GPL570 |
|
ATII non-COPD rep1
|
IEP31-EpCAM(hi)T1a(neg)
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tissue: human distal lung
age: 44 years old
gender: male
smoking history (pack-years): 1.5
smoking cessation: 20 yr
fev1/fvc: 83.6 %
fev1 (% pred): 106.5
number: IEP31
disease state: non-COPD
cell type: Alveolar epithelial type II
|
|
| Sample_geo_accession | GSM721274
| | Sample_status | Public on Oct 11 2012
| | Sample_submission_date | May 08 2011
| | Sample_last_update_date | Oct 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using miRNeasy mini kit (Qiagen, Tokyo, Japan)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 100 ng total RNA according to the manufacturer's protocol using GeneChip 3' IVT Express Kit (Affymetrix).
| | Sample_hyb_protocol | The purified and fragmented cRNA (12.5 μg) was hybridized to GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix). The array was incubated for 16 hours at 45°C, then automatically washed and stained with GeneChip Hybridization, Wash and Stain Kit (Affymetrix).
| | Sample_scan_protocol | The probe array was scanned using a GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix Expression Console (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hiroshi,,Kubo
| | Sample_contact_email | hkubo@med.tohoku.ac.jp
| | Sample_contact_phone | +81-22-717-7184
| | Sample_contact_fax | +81-22-717-7576
| | Sample_contact_department | Department of Advanced Preventive Medicine for Infectious Disease, and Regenerative Medicine
| | Sample_contact_institute | Tohoku University Graduate School of Medicine
| | Sample_contact_address | 2-1 Seiryomachi, Aobaku
| | Sample_contact_city | Sendai
| | Sample_contact_state | Miyagi
| | Sample_contact_zip/postal_code | 980-8575
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.apmid.med.tohoku.ac.jp/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721274/suppl/GSM721274_ATII_cells_non_COPD_1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721274/suppl/GSM721274_ATII_cells_non_COPD_1.CHP.gz
| | Sample_series_id | GSE29133
| | Sample_data_row_count | 54675
| | |
|
GSM721275 | GPL570 |
|
ATII non-COPD rep2
|
H45-EpCAM(hi)T1a(neg)
|
tissue: human distal lung
age: 70 years old
gender: female
smoking history (pack-years): 0
smoking cessation: 0 yr
fev1/fvc: 122.9 %
fev1 (% pred): 78
number: H-45
disease state: non-COPD
cell type: Alveolar epithelial type II
|
|
| Sample_geo_accession | GSM721275
| | Sample_status | Public on Oct 11 2012
| | Sample_submission_date | May 08 2011
| | Sample_last_update_date | Oct 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using miRNeasy mini kit (Qiagen, Tokyo, Japan)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 100 ng total RNA according to the manufacturer's protocol using GeneChip 3' IVT Express Kit (Affymetrix).
| | Sample_hyb_protocol | The purified and fragmented cRNA (12.5 μg) was hybridized to GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix). The array was incubated for 16 hours at 45°C, then automatically washed and stained with GeneChip Hybridization, Wash and Stain Kit (Affymetrix).
| | Sample_scan_protocol | The probe array was scanned using a GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix Expression Console (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hiroshi,,Kubo
| | Sample_contact_email | hkubo@med.tohoku.ac.jp
| | Sample_contact_phone | +81-22-717-7184
| | Sample_contact_fax | +81-22-717-7576
| | Sample_contact_department | Department of Advanced Preventive Medicine for Infectious Disease, and Regenerative Medicine
| | Sample_contact_institute | Tohoku University Graduate School of Medicine
| | Sample_contact_address | 2-1 Seiryomachi, Aobaku
| | Sample_contact_city | Sendai
| | Sample_contact_state | Miyagi
| | Sample_contact_zip/postal_code | 980-8575
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.apmid.med.tohoku.ac.jp/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721275/suppl/GSM721275_ATII_cells_non_COPD_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721275/suppl/GSM721275_ATII_cells_non_COPD_2.CHP.gz
| | Sample_series_id | GSE29133
| | Sample_data_row_count | 54675
| | |
|
GSM721276 | GPL570 |
|
ATII non-COPD rep3
|
H48-EpCAM(hi)T1a(neg)
|
tissue: human distal lung
age: 81 years old
gender: male
smoking history (pack-years): 0
smoking cessation: 0 yr
fev1/fvc: 70.2 %
fev1 (% pred): 98.9
number: H-48
disease state: non-COPD
cell type: Alveolar epithelial type II
|
|
| Sample_geo_accession | GSM721276
| | Sample_status | Public on Oct 11 2012
| | Sample_submission_date | May 08 2011
| | Sample_last_update_date | Oct 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using miRNeasy mini kit (Qiagen, Tokyo, Japan)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 100 ng total RNA according to the manufacturer's protocol using GeneChip 3' IVT Express Kit (Affymetrix).
| | Sample_hyb_protocol | The purified and fragmented cRNA (12.5 μg) was hybridized to GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix). The array was incubated for 16 hours at 45°C, then automatically washed and stained with GeneChip Hybridization, Wash and Stain Kit (Affymetrix).
| | Sample_scan_protocol | The probe array was scanned using a GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix Expression Console (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hiroshi,,Kubo
| | Sample_contact_email | hkubo@med.tohoku.ac.jp
| | Sample_contact_phone | +81-22-717-7184
| | Sample_contact_fax | +81-22-717-7576
| | Sample_contact_department | Department of Advanced Preventive Medicine for Infectious Disease, and Regenerative Medicine
| | Sample_contact_institute | Tohoku University Graduate School of Medicine
| | Sample_contact_address | 2-1 Seiryomachi, Aobaku
| | Sample_contact_city | Sendai
| | Sample_contact_state | Miyagi
| | Sample_contact_zip/postal_code | 980-8575
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.apmid.med.tohoku.ac.jp/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721276/suppl/GSM721276_ATII_cells_non_COPD_3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721276/suppl/GSM721276_ATII_cells_non_COPD_3.CHP.gz
| | Sample_series_id | GSE29133
| | Sample_data_row_count | 54675
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