Search results for the GEO ID: GSE29149  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM721548 | GPL1261 |
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Ch9 chow
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aorta
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genotype: Ath29 congenic mice
disease state: Resistance to atherosclerosis
strain: C57BL/6
diet: chow
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| Sample_geo_accession | GSM721548
| | Sample_status | Public on May 11 2011
| | Sample_submission_date | May 09 2011
| | Sample_last_update_date | May 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice continued with a chow diet or switched onto a Western diet at 4 weeks of age and maintained on the diet for 2 weeks.
| | Sample_growth_protocol_ch1 | Mice were weaned onto a chow diet at 3 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the liver using a Qiagen kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized to mouse arrays MOE430A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the the Affymetrix Scanner 3000
| | Sample_data_processing | The data were analyzed using the Gene Chip Operating System.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | qian,,wang
| | Sample_contact_email | qw3q@virginia.edu
| | Sample_contact_laboratory | shi
| | Sample_contact_department | radiology
| | Sample_contact_institute | university of virginia
| | Sample_contact_address | 480 Ray C Hunt Drive
| | Sample_contact_city | charlottesville
| | Sample_contact_state | virginia
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721548/suppl/GSM721548.CEL.gz
| | Sample_series_id | GSE29149
| | Sample_data_row_count | 45101
| | |
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GSM721549 | GPL1261 |
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B6 chow
|
aorta
|
genotype: C57BL/6 apoE-/- mice
disease state: Atherosclerosis
strain: C57BL/6
diet: chow
|
|
| Sample_geo_accession | GSM721549
| | Sample_status | Public on May 11 2011
| | Sample_submission_date | May 09 2011
| | Sample_last_update_date | May 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice continued with a chow diet or switched onto a Western diet at 4 weeks of age and maintained on the diet for 2 weeks.
| | Sample_growth_protocol_ch1 | Mice were weaned onto a chow diet at 3 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the liver using a Qiagen kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized to mouse arrays MOE430A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the the Affymetrix Scanner 3000
| | Sample_data_processing | The data were analyzed using the Gene Chip Operating System.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | qian,,wang
| | Sample_contact_email | qw3q@virginia.edu
| | Sample_contact_laboratory | shi
| | Sample_contact_department | radiology
| | Sample_contact_institute | university of virginia
| | Sample_contact_address | 480 Ray C Hunt Drive
| | Sample_contact_city | charlottesville
| | Sample_contact_state | virginia
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721549/suppl/GSM721549.CEL.gz
| | Sample_series_id | GSE29149
| | Sample_data_row_count | 45101
| | |
|
GSM721550 | GPL1261 |
|
Ch9 Western
|
aorta
|
genotype: Ath29 congenic mice
disease state: Resistance to atherosclerosis
strain: C57BL/6
diet: western
|
|
| Sample_geo_accession | GSM721550
| | Sample_status | Public on May 11 2011
| | Sample_submission_date | May 09 2011
| | Sample_last_update_date | May 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice continued with a chow diet or switched onto a Western diet at 4 weeks of age and maintained on the diet for 2 weeks.
| | Sample_growth_protocol_ch1 | Mice were weaned onto a chow diet at 3 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the liver using a Qiagen kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized to mouse arrays MOE430A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the the Affymetrix Scanner 3000
| | Sample_data_processing | The data were analyzed using the Gene Chip Operating System.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | qian,,wang
| | Sample_contact_email | qw3q@virginia.edu
| | Sample_contact_laboratory | shi
| | Sample_contact_department | radiology
| | Sample_contact_institute | university of virginia
| | Sample_contact_address | 480 Ray C Hunt Drive
| | Sample_contact_city | charlottesville
| | Sample_contact_state | virginia
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721550/suppl/GSM721550.CEL.gz
| | Sample_series_id | GSE29149
| | Sample_data_row_count | 45101
| | |
|
GSM721551 | GPL1261 |
|
B6 Western
|
aorta
|
genotype: C57BL/6 apoE-/- mice
disease state: Atherosclerosis
strain: C57BL/6
diet: western
|
|
| Sample_geo_accession | GSM721551
| | Sample_status | Public on May 11 2011
| | Sample_submission_date | May 09 2011
| | Sample_last_update_date | May 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice continued with a chow diet or switched onto a Western diet at 4 weeks of age and maintained on the diet for 2 weeks.
| | Sample_growth_protocol_ch1 | Mice were weaned onto a chow diet at 3 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the liver using a Qiagen kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized to mouse arrays MOE430A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the the Affymetrix Scanner 3000
| | Sample_data_processing | The data were analyzed using the Gene Chip Operating System.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | qian,,wang
| | Sample_contact_email | qw3q@virginia.edu
| | Sample_contact_laboratory | shi
| | Sample_contact_department | radiology
| | Sample_contact_institute | university of virginia
| | Sample_contact_address | 480 Ray C Hunt Drive
| | Sample_contact_city | charlottesville
| | Sample_contact_state | virginia
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM721nnn/GSM721551/suppl/GSM721551.CEL.gz
| | Sample_series_id | GSE29149
| | Sample_data_row_count | 45101
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