Search results for the GEO ID: GSE29220  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM722641 | GPL570 |
|
Ovarian cancer at 3C, Patient 1
|
Biofluid from ovarian cancer patient # 1
|
tumor stage: IIIC
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722641
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722641/suppl/GSM722641_142997-142986_Exp_Pt_1.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722642 | GPL570 |
|
Ovarian cancer at 3C, Patient 2
|
Biofluid from ovarian cancer patient # 2
|
tumor stage: IIIC
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722642
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722642/suppl/GSM722642_142998-142987_Exp_Pt_2.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722643 | GPL570 |
|
Ovarian cancer at 3C, Patient 3
|
Biofluid from ovarian cancer patient # 3
|
tumor stage: IIIC
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722643
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722643/suppl/GSM722643_142999-142988_Exp_Pt_3.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722644 | GPL570 |
|
Ovarian cancer at 3C, Patient 4
|
Biofluid from ovarian cancer patient # 4
|
tumor stage: IIIC
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722644
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722644/suppl/GSM722644_143000-142989_Exp_Pt_4.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722645 | GPL570 |
|
Ovarian cancer at 3C, Patient 5
|
Biofluid from ovarian cancer patient # 5
|
tumor stage: IIIC
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722645
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722645/suppl/GSM722645_143001-142990_Exp_Pt_5.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722646 | GPL570 |
|
Ovarian cancer at 3C, Patient 6
|
Biofluid from ovarian cancer patient # 6
|
tumor stage: IIIC
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722646
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722646/suppl/GSM722646_143002-142991_Exp_Pt_6.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722647 | GPL570 |
|
Ovarian cancer at 3C, Patient 7
|
Biofluid from ovarian cancer patient # 7
|
tumor stage: IIIC
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722647
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722647/suppl/GSM722647_143003-142992_Exp_Pt_7.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722648 | GPL570 |
|
Ovarian cancer at 3C, Patient 8
|
Biofluid from ovarian cancer patient # 8
|
tumor stage: IIIC
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722648
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722648/suppl/GSM722648_143004-142993_Exp_Pt_8.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722649 | GPL570 |
|
Ovarian cancer at 3B, Patient 9
|
Biofluid from ovarian cancer patient # 9
|
tumor stage: IIIB
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722649
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722649/suppl/GSM722649_143005-142994_Exp_Pt_9.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722650 | GPL570 |
|
Ovarian cancer at 3C, Patient 10
|
Biofluid from ovarian cancer patient # 10
|
tumor stage: IIIC
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722650
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722650/suppl/GSM722650_143006-142995_Exp_Pt_10.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722651 | GPL570 |
|
Ovarian cancer at 3C, Patient 11
|
Biofluid from ovarian cancer patient # 11
|
tumor stage: IIIC
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722651
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722651/suppl/GSM722651_143007-142996_Exp_Pt_11.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722652 | GPL570 |
|
Healthy control, Subject 1
|
Biofluid from healthy control subject # 1
|
tumor stage: N/A
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722652
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722652/suppl/GSM722652_142948-142914_Ctrl_Pt_1.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722653 | GPL570 |
|
Healthy control, Subject 2
|
Biofluid from healthy control subject # 2
|
tumor stage: N/A
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722653
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722653/suppl/GSM722653_142949-142915_Ctrl_Pt_2.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722654 | GPL570 |
|
Healthy control, Subject 3
|
Biofluid from healthy control subject # 3
|
tumor stage: N/A
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722654
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722654/suppl/GSM722654_142950-142916_Ctrl_Pt_3.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722655 | GPL570 |
|
Healthy control, Subject 4
|
Biofluid from healthy control subject # 4
|
tumor stage: N/A
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722655
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722655/suppl/GSM722655_142951-142917_Ctrl_Pt_4.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722656 | GPL570 |
|
Healthy control, Subject 5
|
Biofluid from healthy control subject # 5
|
tumor stage: N/A
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722656
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722656/suppl/GSM722656_142952-142918_Ctrl_Pt_5.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722657 | GPL570 |
|
Healthy control, Subject 6
|
Biofluid from healthy control subject # 6
|
tumor stage: N/A
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722657
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722657/suppl/GSM722657_142953-142919_Ctrl_Pt_6.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722658 | GPL570 |
|
Healthy control, Subject 7
|
Biofluid from healthy control subject # 7
|
tumor stage: N/A
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722658
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722658/suppl/GSM722658_142954-142920_Ctrl_Pt_7.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722659 | GPL570 |
|
Healthy control, Subject 8
|
Biofluid from healthy control subject # 8
|
tumor stage: N/A
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722659
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722659/suppl/GSM722659_142955-142921_Ctrl_Pt_8.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722660 | GPL570 |
|
Healthy control, Subject 9
|
Biofluid from healthy control subject # 9
|
tumor stage: N/A
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722660
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722660/suppl/GSM722660_142956-142922_Ctrl_Pt_9.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722661 | GPL570 |
|
Healthy control, Subject 10
|
Biofluid from healthy control subject # 10
|
tumor stage: N/A
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722661
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722661/suppl/GSM722661_142957-142923_Ctrl_Pt_10.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
GSM722662 | GPL570 |
|
Healthy control, Subject 11
|
Biofluid from healthy control subject # 11
|
tumor stage: N/A
biofluid: Cell-free saliva
gender: Female
ethnicity: Korean
|
Gene expression data of human salivary transcriptomes
|
| Sample_geo_accession | GSM722662
| | Sample_status | Public on May 12 2011
| | Sample_submission_date | May 11 2011
| | Sample_last_update_date | May 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell-free saliva supernatants were collected by centrifugating the whole saliva at 2,600 × g and 4°C for 15 min. The supernatants were aspirated from the pellets and then stored at -80oC in the presence of RNase inhibitor until use.
| | Sample_growth_protocol_ch1 | Unstimulated whole saliva were collected between 9 AM and 10 AM. All subjects were asked to refrain from eating, drinking, smoking, and oral hygiene activities for at least 1 h before collection.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extraction of saliva transcriptoms was performed using MagMAX Viral RNA Isolation Kit® according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Affymetrix; GeneChip IVT Labeling Kit).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized at 45oC for 16 h on GeneChip Human Genome U133 plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed by GeneChip Robust Multiarray Averaging (GCRMA) using bioconductor gcrma package default settings and quantile as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yu-Hsiang,,Lee
| | Sample_contact_email | yuhsianl@ncu.edu.tw
| | Sample_contact_department | Dental Research Institute
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 10833 Le Conte Avenue
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM722nnn/GSM722662/suppl/GSM722662_142958-142924_Ctrl_Pt_11.CEL.gz
| | Sample_series_id | GSE29220
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
