Search results for the GEO ID: GSE29247  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM723141 | GPL1355 |
|
junctional zone of BN rat placenta, biological rep1
|
Junctional zone of placenta in Brown Noway rat strain
|
tissue: junctional zone of placenta
strain: Brown Norway
gestational stage: day 18.5 of pregnancy
|
Gene expression data from junctional zone of placenta in Brown Noway rat strains at gestation day 18.5
|
| Sample_geo_accession | GSM723141
| | Sample_status | Public on May 13 2011
| | Sample_submission_date | May 12 2011
| | Sample_last_update_date | May 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On gestation day 18.5, female rats were sacrificed and placentation sites collected. Junctional zone tissues were dissected from placenta under dissection microscope and snap frozen in liquid nitrogen.
| | Sample_growth_protocol_ch1 | Virgin female rats 8–10 wk of age for each strain were cohabited with adult males (>3 mo of age) of the same strain. Mating was assessed by daily inspection of vaginal lavages. The presence of sperm in the vaginal lavage was considered as day 0.5 of pregnancy.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was quantified by spectrophotometry and quality was verified using an Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA samples were hybridized to Affymetrix Rat 230 2.0 DNA microarray chips using the GeneChip® Hybridization Oven 640 (Affymetrix, Santa Clara, CA). Washing and staining of the hybridized chips were conducted using the GeneChip® Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Chips were scanned using the Affymetrix GeneChip® Scanner 3000 (Affymetrix) with autoloader.
| | Sample_data_processing | Expression data sets were analyzed using the R statistics software (http://www.r-project.org/) with BioConductor software (http://www.bioconductor.org/) packages. The MAS5 method from the BioConductor software was used for background correction, normalization, and summarization of the DNA microarray data.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Toshihiro,,Konno
| | Sample_contact_email | akonnot@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-5382
| | Sample_contact_fax | +81-3-5841-5382
| | Sample_contact_laboratory | Laboratory of Animal Breeding
| | Sample_contact_department | Graduate School of Agricultural and Life Sciences
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Yayoi 1-1-1
| | Sample_contact_city | Bunkyou-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM723nnn/GSM723141/suppl/GSM723141_BN_070606a.CEL.gz
| | Sample_series_id | GSE29247
| | Sample_data_row_count | 31099
| | |
|
GSM723142 | GPL1355 |
|
junctional zone of BN rat placenta, biological rep2
|
Junctional zone of placenta in Brown Noway rat strain
|
tissue: junctional zone of placenta
strain: Brown Norway
gestational stage: day 18.5 of pregnancy
|
Gene expression data from junctional zone of placenta in Brown Noway rat strains at gestation day 18.5
|
| Sample_geo_accession | GSM723142
| | Sample_status | Public on May 13 2011
| | Sample_submission_date | May 12 2011
| | Sample_last_update_date | May 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On gestation day 18.5, female rats were sacrificed and placentation sites collected. Junctional zone tissues were dissected from placenta under dissection microscope and snap frozen in liquid nitrogen.
| | Sample_growth_protocol_ch1 | Virgin female rats 8–10 wk of age for each strain were cohabited with adult males (>3 mo of age) of the same strain. Mating was assessed by daily inspection of vaginal lavages. The presence of sperm in the vaginal lavage was considered as day 0.5 of pregnancy.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was quantified by spectrophotometry and quality was verified using an Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA samples were hybridized to Affymetrix Rat 230 2.0 DNA microarray chips using the GeneChip® Hybridization Oven 640 (Affymetrix, Santa Clara, CA). Washing and staining of the hybridized chips were conducted using the GeneChip® Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Chips were scanned using the Affymetrix GeneChip® Scanner 3000 (Affymetrix) with autoloader.
| | Sample_data_processing | Expression data sets were analyzed using the R statistics software (http://www.r-project.org/) with BioConductor software (http://www.bioconductor.org/) packages. The MAS5 method from the BioConductor software was used for background correction, normalization, and summarization of the DNA microarray data.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Toshihiro,,Konno
| | Sample_contact_email | akonnot@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-5382
| | Sample_contact_fax | +81-3-5841-5382
| | Sample_contact_laboratory | Laboratory of Animal Breeding
| | Sample_contact_department | Graduate School of Agricultural and Life Sciences
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Yayoi 1-1-1
| | Sample_contact_city | Bunkyou-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM723nnn/GSM723142/suppl/GSM723142_BN_070606b.CEL.gz
| | Sample_series_id | GSE29247
| | Sample_data_row_count | 31099
| | |
|
GSM723143 | GPL1355 |
|
junctional zone of BN rat placenta, biological rep3
|
Junctional zone of placenta in Brown Noway rat strain
|
tissue: junctional zone of placenta
strain: Brown Norway
gestational stage: day 18.5 of pregnancy
|
Gene expression data from junctional zone of placenta in Brown Noway rat strains at gestation day 18.5
|
| Sample_geo_accession | GSM723143
| | Sample_status | Public on May 13 2011
| | Sample_submission_date | May 12 2011
| | Sample_last_update_date | May 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On gestation day 18.5, female rats were sacrificed and placentation sites collected. Junctional zone tissues were dissected from placenta under dissection microscope and snap frozen in liquid nitrogen.
| | Sample_growth_protocol_ch1 | Virgin female rats 8–10 wk of age for each strain were cohabited with adult males (>3 mo of age) of the same strain. Mating was assessed by daily inspection of vaginal lavages. The presence of sperm in the vaginal lavage was considered as day 0.5 of pregnancy.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was quantified by spectrophotometry and quality was verified using an Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA samples were hybridized to Affymetrix Rat 230 2.0 DNA microarray chips using the GeneChip® Hybridization Oven 640 (Affymetrix, Santa Clara, CA). Washing and staining of the hybridized chips were conducted using the GeneChip® Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Chips were scanned using the Affymetrix GeneChip® Scanner 3000 (Affymetrix) with autoloader.
| | Sample_data_processing | Expression data sets were analyzed using the R statistics software (http://www.r-project.org/) with BioConductor software (http://www.bioconductor.org/) packages. The MAS5 method from the BioConductor software was used for background correction, normalization, and summarization of the DNA microarray data.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Toshihiro,,Konno
| | Sample_contact_email | akonnot@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-5382
| | Sample_contact_fax | +81-3-5841-5382
| | Sample_contact_laboratory | Laboratory of Animal Breeding
| | Sample_contact_department | Graduate School of Agricultural and Life Sciences
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Yayoi 1-1-1
| | Sample_contact_city | Bunkyou-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM723nnn/GSM723143/suppl/GSM723143_BN_122205.CEL.gz
| | Sample_series_id | GSE29247
| | Sample_data_row_count | 31099
| | |
|
GSM723144 | GPL1355 |
|
junctional zone of HSD rat placenta, biological rep1
|
Junctional zone of placenta in Holtzman-Sprague Dawley rat strain
|
tissue: junctional zone of placenta
strain: Holtzman-Sprague Dawley
gestational stage: day 18.5 of pregnancy
|
Gene expression data from junctional zone of placenta in Holtzman-Sprague Dawley rat strains at gestation day 18.5
|
| Sample_geo_accession | GSM723144
| | Sample_status | Public on May 13 2011
| | Sample_submission_date | May 12 2011
| | Sample_last_update_date | May 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On gestation day 18.5, female rats were sacrificed and placentation sites collected. Junctional zone tissues were dissected from placenta under dissection microscope and snap frozen in liquid nitrogen.
| | Sample_growth_protocol_ch1 | Virgin female rats 8–10 wk of age for each strain were cohabited with adult males (>3 mo of age) of the same strain. Mating was assessed by daily inspection of vaginal lavages. The presence of sperm in the vaginal lavage was considered as day 0.5 of pregnancy.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was quantified by spectrophotometry and quality was verified using an Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA samples were hybridized to Affymetrix Rat 230 2.0 DNA microarray chips using the GeneChip® Hybridization Oven 640 (Affymetrix, Santa Clara, CA). Washing and staining of the hybridized chips were conducted using the GeneChip® Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Chips were scanned using the Affymetrix GeneChip® Scanner 3000 (Affymetrix) with autoloader.
| | Sample_data_processing | Expression data sets were analyzed using the R statistics software (http://www.r-project.org/) with BioConductor software (http://www.bioconductor.org/) packages. The MAS5 method from the BioConductor software was used for background correction, normalization, and summarization of the DNA microarray data.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Toshihiro,,Konno
| | Sample_contact_email | akonnot@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-5382
| | Sample_contact_fax | +81-3-5841-5382
| | Sample_contact_laboratory | Laboratory of Animal Breeding
| | Sample_contact_department | Graduate School of Agricultural and Life Sciences
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Yayoi 1-1-1
| | Sample_contact_city | Bunkyou-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM723nnn/GSM723144/suppl/GSM723144_HSD_070606a.CEL.gz
| | Sample_series_id | GSE29247
| | Sample_data_row_count | 31099
| | |
|
GSM723145 | GPL1355 |
|
junctional zone of HSD rat placenta, biological rep2
|
Junctional zone of placenta in Holtzman-Sprague Dawley rat strain
|
tissue: junctional zone of placenta
strain: Holtzman-Sprague Dawley
gestational stage: day 18.5 of pregnancy
|
Gene expression data from junctional zone of placenta in Holtzman-Sprague Dawley rat strains at gestation day 18.5
|
| Sample_geo_accession | GSM723145
| | Sample_status | Public on May 13 2011
| | Sample_submission_date | May 12 2011
| | Sample_last_update_date | May 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On gestation day 18.5, female rats were sacrificed and placentation sites collected. Junctional zone tissues were dissected from placenta under dissection microscope and snap frozen in liquid nitrogen.
| | Sample_growth_protocol_ch1 | Virgin female rats 8–10 wk of age for each strain were cohabited with adult males (>3 mo of age) of the same strain. Mating was assessed by daily inspection of vaginal lavages. The presence of sperm in the vaginal lavage was considered as day 0.5 of pregnancy.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was quantified by spectrophotometry and quality was verified using an Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA samples were hybridized to Affymetrix Rat 230 2.0 DNA microarray chips using the GeneChip® Hybridization Oven 640 (Affymetrix, Santa Clara, CA). Washing and staining of the hybridized chips were conducted using the GeneChip® Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Chips were scanned using the Affymetrix GeneChip® Scanner 3000 (Affymetrix) with autoloader.
| | Sample_data_processing | Expression data sets were analyzed using the R statistics software (http://www.r-project.org/) with BioConductor software (http://www.bioconductor.org/) packages. The MAS5 method from the BioConductor software was used for background correction, normalization, and summarization of the DNA microarray data.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Toshihiro,,Konno
| | Sample_contact_email | akonnot@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-5382
| | Sample_contact_fax | +81-3-5841-5382
| | Sample_contact_laboratory | Laboratory of Animal Breeding
| | Sample_contact_department | Graduate School of Agricultural and Life Sciences
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Yayoi 1-1-1
| | Sample_contact_city | Bunkyou-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM723nnn/GSM723145/suppl/GSM723145_HSD_070606b.CEL.gz
| | Sample_series_id | GSE29247
| | Sample_data_row_count | 31099
| | |
|
GSM723146 | GPL1355 |
|
junctional zone of HSD rat placenta, biological rep3
|
Junctional zone of placenta in Holtzman-Sprague Dawley rat strain
|
tissue: junctional zone of placenta
strain: Holtzman-Sprague Dawley
gestational stage: day 18.5 of pregnancy
|
Gene expression data from junctional zone of placenta in Holtzman-Sprague Dawley rat strains at gestation day 18.5
|
| Sample_geo_accession | GSM723146
| | Sample_status | Public on May 13 2011
| | Sample_submission_date | May 12 2011
| | Sample_last_update_date | May 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On gestation day 18.5, female rats were sacrificed and placentation sites collected. Junctional zone tissues were dissected from placenta under dissection microscope and snap frozen in liquid nitrogen.
| | Sample_growth_protocol_ch1 | Virgin female rats 8–10 wk of age for each strain were cohabited with adult males (>3 mo of age) of the same strain. Mating was assessed by daily inspection of vaginal lavages. The presence of sperm in the vaginal lavage was considered as day 0.5 of pregnancy.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was quantified by spectrophotometry and quality was verified using an Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA samples were hybridized to Affymetrix Rat 230 2.0 DNA microarray chips using the GeneChip® Hybridization Oven 640 (Affymetrix, Santa Clara, CA). Washing and staining of the hybridized chips were conducted using the GeneChip® Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Chips were scanned using the Affymetrix GeneChip® Scanner 3000 (Affymetrix) with autoloader.
| | Sample_data_processing | Expression data sets were analyzed using the R statistics software (http://www.r-project.org/) with BioConductor software (http://www.bioconductor.org/) packages. The MAS5 method from the BioConductor software was used for background correction, normalization, and summarization of the DNA microarray data.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Toshihiro,,Konno
| | Sample_contact_email | akonnot@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-5382
| | Sample_contact_fax | +81-3-5841-5382
| | Sample_contact_laboratory | Laboratory of Animal Breeding
| | Sample_contact_department | Graduate School of Agricultural and Life Sciences
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Yayoi 1-1-1
| | Sample_contact_city | Bunkyou-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM723nnn/GSM723146/suppl/GSM723146_HSD_102605.CEL.gz
| | Sample_series_id | GSE29247
| | Sample_data_row_count | 31099
| | |
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