Search results for the GEO ID: GSE29284  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM723883 | GPL1261 |
|
mutant brain, biological rep1
|
Microvascular fragments from P1 brain, PDGFRb mutant
|
tissue: brain microvessels
genotype: PDGFRb (D849V)
age: postnatal day 1
genetic background: 129S/J mixed
|
Gene expression data from brain microvessels expressing constitutively active PDGFRb in pericytes
|
| Sample_geo_accession | GSM723883
| | Sample_status | Public on Jun 15 2011
| | Sample_submission_date | May 13 2011
| | Sample_last_update_date | Jun 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA normalization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lorin,,Olson
| | Sample_contact_email | Lorin-Olson@omrf.org
| | Sample_contact_institute | Oklahoma Medical Research Foundation
| | Sample_contact_address | 825 NE 13th St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | Oklahoma
| | Sample_contact_zip/postal_code | 73104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM723nnn/GSM723883/suppl/GSM723883_MSSM012910SC2PDGFR02CSOR-_28EXPmmMou430MDXL.CEL.gz
| | Sample_series_id | GSE29284
| | Sample_data_row_count | 45101
| | |
|
GSM723884 | GPL1261 |
|
mutant brain, biological rep2
|
Microvascular fragments from P1 brain, PDGFRb mutant
|
tissue: brain microvessels
genotype: PDGFRb (D849V)
age: postnatal day 1
genetic background: 129S/J mixed
|
Gene expression data from brain microvessels expressing constitutively active PDGFRb in pericytes
|
| Sample_geo_accession | GSM723884
| | Sample_status | Public on Jun 15 2011
| | Sample_submission_date | May 13 2011
| | Sample_last_update_date | Jun 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA normalization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lorin,,Olson
| | Sample_contact_email | Lorin-Olson@omrf.org
| | Sample_contact_institute | Oklahoma Medical Research Foundation
| | Sample_contact_address | 825 NE 13th St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | Oklahoma
| | Sample_contact_zip/postal_code | 73104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM723nnn/GSM723884/suppl/GSM723884_MSSM012910SC2PDGFR03CSOR-_38EXPmmMou430MDXL.CEL.gz
| | Sample_series_id | GSE29284
| | Sample_data_row_count | 45101
| | |
|
GSM723885 | GPL1261 |
|
mutant brain, biological rep3
|
Microvascular fragments from P1 brain, PDGFRb mutant
|
tissue: brain microvessels
genotype: PDGFRb (D849V)
age: postnatal day 1
genetic background: 129S/J mixed
|
Gene expression data from brain microvessels expressing constitutively active PDGFRb in pericytes
|
| Sample_geo_accession | GSM723885
| | Sample_status | Public on Jun 15 2011
| | Sample_submission_date | May 13 2011
| | Sample_last_update_date | Jun 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA normalization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lorin,,Olson
| | Sample_contact_email | Lorin-Olson@omrf.org
| | Sample_contact_institute | Oklahoma Medical Research Foundation
| | Sample_contact_address | 825 NE 13th St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | Oklahoma
| | Sample_contact_zip/postal_code | 73104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM723nnn/GSM723885/suppl/GSM723885_MSSM012910SC2PDGFR04CSOR-_48EXPmmMou430MDXL.CEL.gz
| | Sample_series_id | GSE29284
| | Sample_data_row_count | 45101
| | |
|
GSM723886 | GPL1261 |
|
mutant brain, biological rep4
|
Microvascular fragments from P1 brain, PDGFRb mutant
|
tissue: brain microvessels
genotype: PDGFRb (D849V)
age: postnatal day 1
genetic background: 129S/J mixed
|
Gene expression data from brain microvessels expressing constitutively active PDGFRb in pericytes
|
| Sample_geo_accession | GSM723886
| | Sample_status | Public on Jun 15 2011
| | Sample_submission_date | May 13 2011
| | Sample_last_update_date | Jun 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA normalization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lorin,,Olson
| | Sample_contact_email | Lorin-Olson@omrf.org
| | Sample_contact_institute | Oklahoma Medical Research Foundation
| | Sample_contact_address | 825 NE 13th St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | Oklahoma
| | Sample_contact_zip/postal_code | 73104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM723nnn/GSM723886/suppl/GSM723886_MSSM012910SC2PDGFR08CSOR-_88EXPmmMou430MDXL.CEL.gz
| | Sample_series_id | GSE29284
| | Sample_data_row_count | 45101
| | |
|
GSM723887 | GPL1261 |
|
control brain, biological rep1
|
Microvascular fragments from P1 brain, PDGFRb wild type
|
tissue: brain microvessels
genotype: wild type
age: postnatal day 1
genetic background: 129S/J mixed
|
Gene expression data from brain microvessels expressing wild type PDGFRb in pericytes
|
| Sample_geo_accession | GSM723887
| | Sample_status | Public on Jun 15 2011
| | Sample_submission_date | May 13 2011
| | Sample_last_update_date | Jun 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA normalization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lorin,,Olson
| | Sample_contact_email | Lorin-Olson@omrf.org
| | Sample_contact_institute | Oklahoma Medical Research Foundation
| | Sample_contact_address | 825 NE 13th St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | Oklahoma
| | Sample_contact_zip/postal_code | 73104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM723nnn/GSM723887/suppl/GSM723887_MSSM012910SC2PDGFR01CSOR-_18EXPmmMou430MDXL.CEL.gz
| | Sample_series_id | GSE29284
| | Sample_data_row_count | 45101
| | |
|
GSM723888 | GPL1261 |
|
control brain, biological rep2
|
Microvascular fragments from P1 brain, PDGFRb wild type
|
tissue: brain microvessels
genotype: wild type
age: postnatal day 1
genetic background: 129S/J mixed
|
Gene expression data from brain microvessels expressing wild type PDGFRb in pericytes
|
| Sample_geo_accession | GSM723888
| | Sample_status | Public on Jun 15 2011
| | Sample_submission_date | May 13 2011
| | Sample_last_update_date | Jun 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA normalization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lorin,,Olson
| | Sample_contact_email | Lorin-Olson@omrf.org
| | Sample_contact_institute | Oklahoma Medical Research Foundation
| | Sample_contact_address | 825 NE 13th St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | Oklahoma
| | Sample_contact_zip/postal_code | 73104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM723nnn/GSM723888/suppl/GSM723888_MSSM012910SC2PDGFR05CSOR-_58EXPmmMou430MDXL.CEL.gz
| | Sample_series_id | GSE29284
| | Sample_data_row_count | 45101
| | |
|
GSM723889 | GPL1261 |
|
control brain, biological rep3
|
Microvascular fragments from P1 brain, PDGFRb wild type
|
tissue: brain microvessels
genotype: wild type
age: postnatal day 1
genetic background: 129S/J mixed
|
Gene expression data from brain microvessels expressing wild type PDGFRb in pericytes
|
| Sample_geo_accession | GSM723889
| | Sample_status | Public on Jun 15 2011
| | Sample_submission_date | May 13 2011
| | Sample_last_update_date | Jun 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA normalization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lorin,,Olson
| | Sample_contact_email | Lorin-Olson@omrf.org
| | Sample_contact_institute | Oklahoma Medical Research Foundation
| | Sample_contact_address | 825 NE 13th St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | Oklahoma
| | Sample_contact_zip/postal_code | 73104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM723nnn/GSM723889/suppl/GSM723889_MSSM012910SC2PDGFR06CSOR-_68EXPmmMou430MDXL.CEL.gz
| | Sample_series_id | GSE29284
| | Sample_data_row_count | 45101
| | |
|
GSM723890 | GPL1261 |
|
control brain, biological rep4
|
Microvascular fragments from P1 brain, PDGFRb wild type
|
tissue: brain microvessels
genotype: wild type
age: postnatal day 1
genetic background: 129S/J mixed
|
Gene expression data from brain microvessels expressing wild type PDGFRb in pericytes
|
| Sample_geo_accession | GSM723890
| | Sample_status | Public on Jun 15 2011
| | Sample_submission_date | May 13 2011
| | Sample_last_update_date | Jun 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA normalization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lorin,,Olson
| | Sample_contact_email | Lorin-Olson@omrf.org
| | Sample_contact_institute | Oklahoma Medical Research Foundation
| | Sample_contact_address | 825 NE 13th St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | Oklahoma
| | Sample_contact_zip/postal_code | 73104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM723nnn/GSM723890/suppl/GSM723890_MSSM012910SC2PDGFR07CSOR-_78EXPmmMou430MDXL.CEL.gz
| | Sample_series_id | GSE29284
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
