Search results for the GEO ID: GSE29299  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM724207 | GPL1355 |
|
t0 replica 1
|
retinas collected at 7am from rats kept all night in dark
|
tissue: retina
treatment: 7am from rats kept all night in dark
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724207
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724207/suppl/GSM724207_t0_1.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
GSM724208 | GPL1355 |
|
t0 replica 2
|
retinas collected at 7am from rats kept all night in dark
|
tissue: retina
treatment: 7am from rats kept all night in dark
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724208
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724208/suppl/GSM724208_t0_2.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
GSM724209 | GPL1355 |
|
t0 replica 3
|
retinas collected at 7am from rats kept all night in dark
|
tissue: retina
treatment: 7am from rats kept all night in dark
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724209
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724209/suppl/GSM724209_t0_3.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
GSM724210 | GPL1355 |
|
3hrs dark replica 1
|
retinas collected at 10am from rats kept all night in dark
|
tissue: retina
treatment: 10am from rats kept all night in dark
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724210
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724210/suppl/GSM724210_3D_1.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
GSM724211 | GPL1355 |
|
3hrs dark replica 2
|
retinas collected at 10am from rats kept all night in dark
|
tissue: retina
treatment: 10am from rats kept all night in dark
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724211
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724211/suppl/GSM724211_3D_2.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
GSM724212 | GPL1355 |
|
3hrs dark replica 3
|
retinas collected at 10am from rats kept all night in dark
|
tissue: retina
treatment: 10am from rats kept all night in dark
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724212
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724212/suppl/GSM724212_3D_3.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
GSM724213 | GPL1355 |
|
3hrs light replica 1
|
retinas collected at 10am from rats kept all night in dark and then exposed to 3 hours of 1000 lux light
|
tissue: retina
treatment: 10am from rats kept all night in dark and then exposed to 3 hours of 1000 lux light
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724213
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724213/suppl/GSM724213_3L_1.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
GSM724214 | GPL1355 |
|
3hrs light replica 2
|
retinas collected at 10am from rats kept all night in dark and then exposed to 3 hours of 1000 lux light
|
tissue: retina
treatment: 10am from rats kept all night in dark and then exposed to 3 hours of 1000 lux light
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724214
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724214/suppl/GSM724214_3L_2.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
GSM724215 | GPL1355 |
|
3hrs light replica 3
|
retinas collected at 10am from rats kept all night in dark and then exposed to 3 hours of 1000 lux light
|
tissue: retina
treatment: 10am from rats kept all night in dark and then exposed to 3 hours of 1000 lux light
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724215
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724215/suppl/GSM724215_3L_3.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
GSM724216 | GPL1355 |
|
6hrs dark replica 1
|
retinas collected at 1pm from rats kept all night in dark
|
tissue: retina
treatment: 1pm from rats kept all night in dark
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724216
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724216/suppl/GSM724216_6D_1.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
GSM724217 | GPL1355 |
|
6hrs dark replica 2
|
retinas collected at 1pm from rats kept all night in dark
|
tissue: retina
treatment: 1pm from rats kept all night in dark
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724217
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724217/suppl/GSM724217_6D_2.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
GSM724218 | GPL1355 |
|
6hrs dark replica 3
|
retinas collected at 1pm from rats kept all night in dark
|
tissue: retina
treatment: 1pm from rats kept all night in dark
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724218
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724218/suppl/GSM724218_6D_3.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
GSM724219 | GPL1355 |
|
6hrs light replica 1
|
retinas collected at 1pm from rats kept all night in dark and then exposed to 3 hours of 1000 lux light
|
tissue: retina
treatment: 1pm from rats kept all night in dark and then exposed to 3 hours of 1000 lux light
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724219
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724219/suppl/GSM724219_6L_1.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
GSM724220 | GPL1355 |
|
6hrs light replica 2
|
retinas collected at 1pm from rats kept all night in dark and then exposed to 3 hours of 1000 lux light
|
tissue: retina
treatment: 1pm from rats kept all night in dark and then exposed to 3 hours of 1000 lux light
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724220
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724220/suppl/GSM724220_6L_2.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
GSM724221 | GPL1355 |
|
6hrs light replica 3
|
retinas collected at 1pm from rats kept all night in dark and then exposed to 3 hours of 1000 lux light
|
tissue: retina
treatment: 1pm from rats kept all night in dark and then exposed to 3 hours of 1000 lux light
strain: Long-Evans
|
|
| Sample_geo_accession | GSM724221
| | Sample_status | Public on Oct 30 2011
| | Sample_submission_date | May 14 2011
| | Sample_last_update_date | Oct 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 or 6 hours of light exposure (1000 Lux).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA from retinas was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Diana ,Eva,Bedolla Orozco
| | Sample_contact_email | bedolla@sissa.it, diana.bedolla@gmail.com
| | Sample_contact_phone | +39-040-3787769
| | Sample_contact_fax | +39-040-3787702
| | Sample_contact_laboratory | Lab. Torre
| | Sample_contact_department | Neurobiology
| | Sample_contact_institute | International School for Advanced Studies - SISSA
| | Sample_contact_address | Via Bonomea 265
| | Sample_contact_city | Trieste
| | Sample_contact_zip/postal_code | 34136
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724221/suppl/GSM724221_6L_3.CEL.gz
| | Sample_series_id | GSE29299
| | Sample_data_row_count | 31099
| | |
|
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