Search results for the GEO ID: GSE29326  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM724606 | GPL570 |
|
Sample1 RAEB-t
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory anemia with excess of blast in transformation sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724606
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724606/suppl/GSM724606_M1.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724607 | GPL570 |
|
Sample2 RAEB
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory anemia with excess of blast sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724607
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724607/suppl/GSM724607_M3.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724608 | GPL570 |
|
Sample3 RAEB
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory anemia with excess of blast sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724608
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724608/suppl/GSM724608_M5.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724609 | GPL570 |
|
Sample4 RAEB
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory anemia with excess of blast sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724609
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724609/suppl/GSM724609_M7.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724610 | GPL570 |
|
Sample5 RC
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory cytopenia sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724610
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724610/suppl/GSM724610_M11.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724611 | GPL570 |
|
Sample6 RC
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory cytopenia sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724611
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724611/suppl/GSM724611_M14.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724612 | GPL570 |
|
Sample7 RAEB
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory anemia with excess of blast sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724612
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724612/suppl/GSM724612_M16.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724613 | GPL570 |
|
Sample8 RC
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory cytopenia sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724613
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724613/suppl/GSM724613_M18.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724614 | GPL570 |
|
Sample9 RAEB-t
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory anemia with excess of blast in transformation sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724614
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724614/suppl/GSM724614_M22.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724615 | GPL570 |
|
Sample10 RC
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory cytopenia sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724615
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724615/suppl/GSM724615_M24.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724616 | GPL570 |
|
Sample11 RAEB-t
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory anemia with excess of blast in transformation sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724616
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724616/suppl/GSM724616_M25.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724617 | GPL570 |
|
Sample12 RAEB
|
MDS sample
|
tissue: Peripheral Blood
diagnosis: refractory anemia with excess of blast sample at diagnosis
|
stored, frozen Peripheral Blood cells
|
| Sample_geo_accession | GSM724617
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724617/suppl/GSM724617_M36.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724618 | GPL570 |
|
Sample13 RC
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory cytopenia sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724618
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724618/suppl/GSM724618_M38.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724619 | GPL570 |
|
Sample14 RAEB
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory anemia with excess of blast sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724619
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724619/suppl/GSM724619_M122.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724620 | GPL570 |
|
Sample15 RC
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory cytopenia sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724620
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724620/suppl/GSM724620_M123.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724621 | GPL570 |
|
Sample16 RAEB-t
|
MDS sample
|
tissue: Peripheral Blood
diagnosis: refractory anemia with excess of blast in transformation sample at diagnosis
|
stored, frozen Peripheral Blood cells
|
| Sample_geo_accession | GSM724621
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724621/suppl/GSM724621_M125.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724622 | GPL570 |
|
Sample17 RC
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory cytopenia sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724622
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724622/suppl/GSM724622_M126.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724623 | GPL570 |
|
Sample18 RC
|
MDS sample
|
tissue: Peripheral Blood
diagnosis: refractory cytopenia sample at diagnosis
|
stored, frozen Peripheral Blood cells
|
| Sample_geo_accession | GSM724623
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724623/suppl/GSM724623_M128.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724624 | GPL570 |
|
Sample19 RAEB
|
MDS sample
|
tissue: Peripheral Blood
diagnosis: refractory anemia with excess of blast sample at diagnosis
|
stored, frozen Peripheral Blood cells
|
| Sample_geo_accession | GSM724624
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724624/suppl/GSM724624_M129.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724625 | GPL570 |
|
Sample 20 RC
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory cytopenia sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724625
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724625/suppl/GSM724625_M130.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724626 | GPL570 |
|
Sample21 RC
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory cytopenia sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724626
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724626/suppl/GSM724626_M131.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724627 | GPL570 |
|
Sample22 RC
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory cytopenia sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724627
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724627/suppl/GSM724627_M132.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724628 | GPL570 |
|
Sample23 RAEB-t
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory anemia with excess of blast in transformation sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724628
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724628/suppl/GSM724628_M134.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
| | |
|
GSM724629 | GPL570 |
|
Sample24 RC
|
MDS sample
|
tissue: Bone Marrow
diagnosis: refractory cytopenia sample at diagnosis
|
stored, frozen Bone Marrow cells
|
| Sample_geo_accession | GSM724629
| | Sample_status | Public on Feb 29 2012
| | Sample_submission_date | May 16 2011
| | Sample_last_update_date | Feb 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stored, frozen bone marrow or peripheral blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One Cycle Assay Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-project.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | silvia ,,bresolin
| | Sample_contact_email | silvia.bresolin@unipd.it
| | Sample_contact_phone | +390498211453
| | Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| | Sample_contact_department | department of pediatrics
| | Sample_contact_institute | università di padova
| | Sample_contact_address | via giustiniani 3
| | Sample_contact_city | padova
| | Sample_contact_state | padova
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724629/suppl/GSM724629_M135.CEL.gz
| | Sample_series_id | GSE29326
| | Sample_data_row_count | 54675
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