Search results for the GEO ID: GSE29402 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM724093 | GPL570 |
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Human Conjunctiva Donor 1
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Conjunctiva
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tissue: Conjunctiva
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Sample_geo_accession | GSM724093
| Sample_status | Public on Jun 09 2011
| Sample_submission_date | May 13 2011
| Sample_last_update_date | Jun 09 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization. Total RNA was isolated using the Qiagen’s RNA easy mini columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using RMAExpress software.
| Sample_platform_id | GPL570
| Sample_contact_name | Martin,,Nakatsu
| Sample_contact_institute | Jules Stein Eye Institute
| Sample_contact_address | 200 Stein Plaza
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724093/suppl/GSM724093.CEL.gz
| Sample_series_id | GSE29402
| Sample_series_id | GSE38190
| Sample_data_row_count | 54675
| |
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GSM724094 | GPL570 |
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Human Conjunctiva Donor 2
|
Conjunctiva
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tissue: Conjunctiva
|
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Sample_geo_accession | GSM724094
| Sample_status | Public on Jun 09 2011
| Sample_submission_date | May 13 2011
| Sample_last_update_date | May 24 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization. Total RNA was isolated using the Qiagen’s RNA easy mini columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using Affymetrix Expression Console.
| Sample_platform_id | GPL570
| Sample_contact_name | Martin,,Nakatsu
| Sample_contact_institute | Jules Stein Eye Institute
| Sample_contact_address | 200 Stein Plaza
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724094/suppl/GSM724094.CEL.gz
| Sample_series_id | GSE29402
| Sample_series_id | GSE38190
| Sample_data_row_count | 54675
| |
|
GSM724095 | GPL570 |
|
Human Conjunctiva Donor 15 OS (Left Eye)
|
Conjunctiva
|
tissue: Conjunctiva
|
|
Sample_geo_accession | GSM724095
| Sample_status | Public on Jun 09 2011
| Sample_submission_date | May 13 2011
| Sample_last_update_date | May 24 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization. Total RNA was isolated using the Qiagen’s RNA easy mini columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using Affymetrix Expression Console.
| Sample_platform_id | GPL570
| Sample_contact_name | Martin,,Nakatsu
| Sample_contact_institute | Jules Stein Eye Institute
| Sample_contact_address | 200 Stein Plaza
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724095/suppl/GSM724095.CEL.gz
| Sample_series_id | GSE29402
| Sample_series_id | GSE38190
| Sample_data_row_count | 54675
| |
|
GSM724096 | GPL570 |
|
Human Cornea Donor 1
|
Cornea
|
tissue: Cornea
|
|
Sample_geo_accession | GSM724096
| Sample_status | Public on Jun 09 2011
| Sample_submission_date | May 13 2011
| Sample_last_update_date | May 24 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using RMAExpress software.
| Sample_platform_id | GPL570
| Sample_contact_name | Martin,,Nakatsu
| Sample_contact_institute | Jules Stein Eye Institute
| Sample_contact_address | 200 Stein Plaza
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724096/suppl/GSM724096.CEL.gz
| Sample_series_id | GSE29402
| Sample_series_id | GSE38190
| Sample_data_row_count | 54675
| |
|
GSM724097 | GPL570 |
|
Human Cornea Donor 2
|
Cornea
|
tissue: Cornea
|
|
Sample_geo_accession | GSM724097
| Sample_status | Public on Jun 09 2011
| Sample_submission_date | May 13 2011
| Sample_last_update_date | May 24 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using RMAExpress software.
| Sample_platform_id | GPL570
| Sample_contact_name | Martin,,Nakatsu
| Sample_contact_institute | Jules Stein Eye Institute
| Sample_contact_address | 200 Stein Plaza
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724097/suppl/GSM724097.CEL.gz
| Sample_series_id | GSE29402
| Sample_series_id | GSE38190
| Sample_data_row_count | 54675
| |
|
GSM724098 | GPL570 |
|
Human Cornea Donor 15 OS (Left Eye)
|
Cornea
|
tissue: Cornea
|
|
Sample_geo_accession | GSM724098
| Sample_status | Public on Jun 09 2011
| Sample_submission_date | May 13 2011
| Sample_last_update_date | May 24 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using RMAExpress software.
| Sample_platform_id | GPL570
| Sample_contact_name | Martin,,Nakatsu
| Sample_contact_institute | Jules Stein Eye Institute
| Sample_contact_address | 200 Stein Plaza
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724098/suppl/GSM724098.CEL.gz
| Sample_series_id | GSE29402
| Sample_series_id | GSE38190
| Sample_data_row_count | 54675
| |
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