Search results for the GEO ID: GSE29561  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM731859 | GPL96 |
|
Pre-treatment breast cancer cells sample 1
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 0
treatment response in vitro: NA
ki67 reduction: 0
|
|
| Sample_geo_accession | GSM731859
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731859/suppl/GSM731859_Sample_1.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731860 | GPL96 |
|
Pre-treatment breast cancer cells sample 2
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 1
treatment response in vitro: NA
ki67 reduction: 0
|
|
| Sample_geo_accession | GSM731860
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731860/suppl/GSM731860_Sample_2.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731861 | GPL96 |
|
Pre-treatment breast cancer cells sample 3
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 0
treatment response in vitro: NA
ki67 reduction: 0
|
|
| Sample_geo_accession | GSM731861
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731861/suppl/GSM731861_Sample_3.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731862 | GPL96 |
|
Pre-treatment breast cancer cells sample 4
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 0
treatment response in vitro: NA
ki67 reduction: 1
|
|
| Sample_geo_accession | GSM731862
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731862/suppl/GSM731862_Sample_4.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731863 | GPL96 |
|
Pre-treatment breast cancer cells sample 5
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 0
treatment response in vitro: 1
ki67 reduction: 0
|
|
| Sample_geo_accession | GSM731863
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731863/suppl/GSM731863_Sample_5.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731864 | GPL96 |
|
Pre-treatment breast cancer cells sample 6
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 0
treatment response in vitro: 0
ki67 reduction: 0
|
|
| Sample_geo_accession | GSM731864
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731864/suppl/GSM731864_Sample_6.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731865 | GPL96 |
|
Pre-treatment breast cancer cells sample 7
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 1
treatment response in vitro: NA
ki67 reduction: 1
|
|
| Sample_geo_accession | GSM731865
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731865/suppl/GSM731865_Sample_7.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731866 | GPL96 |
|
Pre-treatment breast cancer cells sample 8
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 1
treatment response in vitro: NA
ki67 reduction: 0
|
|
| Sample_geo_accession | GSM731866
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731866/suppl/GSM731866_Sample_8.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731867 | GPL96 |
|
Pre-treatment breast cancer cells sample 9
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 0
treatment response in vitro: NA
ki67 reduction: 1
|
|
| Sample_geo_accession | GSM731867
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731867/suppl/GSM731867_Sample_9.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731868 | GPL96 |
|
Pre-treatment breast cancer cells sample 10
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 0
treatment response in vitro: NA
ki67 reduction: 0
|
|
| Sample_geo_accession | GSM731868
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731868/suppl/GSM731868_Sample_10.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731869 | GPL96 |
|
Pre-treatment breast cancer cells sample 11
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 1
treatment response in vitro: NA
ki67 reduction: 0
|
|
| Sample_geo_accession | GSM731869
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731869/suppl/GSM731869_Sample_11.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731870 | GPL96 |
|
Pre-treatment breast cancer cells sample 12
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 0
treatment response in vitro: 1
ki67 reduction: 1
|
|
| Sample_geo_accession | GSM731870
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731870/suppl/GSM731870_Sample_12.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731871 | GPL96 |
|
Pre-treatment breast cancer cells sample 13
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 0
treatment response in vitro: 1
ki67 reduction: 1
|
|
| Sample_geo_accession | GSM731871
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731871/suppl/GSM731871_Sample_13.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731872 | GPL96 |
|
Pre-treatment breast cancer cells sample 14
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 1
treatment response in vitro: 1
ki67 reduction: NA
|
|
| Sample_geo_accession | GSM731872
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731872/suppl/GSM731872_Sample_14.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731873 | GPL96 |
|
Pre-treatment breast cancer cells sample 15
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 1
treatment response in vitro: 0
ki67 reduction: NA
|
|
| Sample_geo_accession | GSM731873
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731873/suppl/GSM731873_Sample_15.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731874 | GPL96 |
|
Pre-treatment breast cancer cells sample 16
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 1
treatment response in vitro: 0
ki67 reduction: NA
|
|
| Sample_geo_accession | GSM731874
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731874/suppl/GSM731874_Sample_16.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731875 | GPL96 |
|
Pre-treatment breast cancer cells sample 17
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 0
treatment response in vitro: 0
ki67 reduction: 0
|
|
| Sample_geo_accession | GSM731875
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731875/suppl/GSM731875_Sample_17.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731876 | GPL96 |
|
Pre-treatment breast cancer cells sample 18
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 1
treatment response in vitro: 1
ki67 reduction: 1
|
|
| Sample_geo_accession | GSM731876
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731876/suppl/GSM731876_Sample_18.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731877 | GPL96 |
|
Pre-treatment breast cancer cells sample 19
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 1
treatment response in vitro: 0
ki67 reduction: 0
|
|
| Sample_geo_accession | GSM731877
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731877/suppl/GSM731877_Sample_19.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731878 | GPL96 |
|
Pre-treatment breast cancer cells sample 20
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 0
treatment response in vitro: 0
ki67 reduction: 0
|
|
| Sample_geo_accession | GSM731878
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731878/suppl/GSM731878_Sample_20.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731879 | GPL96 |
|
Pre-treatment breast cancer cells sample 21
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 0
treatment response in vitro: NA
ki67 reduction: 0
|
|
| Sample_geo_accession | GSM731879
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731879/suppl/GSM731879_Sample_21.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
GSM731880 | GPL96 |
|
Pre-treatment breast cancer cells sample 22
|
Pre-treatment breast cancer cells
|
cell type: breast cancer cells
treatment response in vivo: 1
treatment response in vitro: NA
ki67 reduction: 1
|
|
| Sample_geo_accession | GSM731880
| | Sample_status | Public on Oct 26 2012
| | Sample_submission_date | May 26 2011
| | Sample_last_update_date | Oct 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, followed by purification with RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard affymetrix protocol
| | Sample_hyb_protocol | standard affymetrix protocol
| | Sample_scan_protocol | standard affymetrix protocol
| | Sample_data_processing | We used R Bioconductor (2.3) to do the processing of the arrays. Normalization (etc) has been done using the function rma() with default options from package affy (1.20.2).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Florian,Leopold,Klinglmueller
| | Sample_contact_email | florian.klinglmueller@meduniwien.ac.at
| | Sample_contact_department | Medizinische Statistik und Informatik
| | Sample_contact_institute | Medizinische Universitaet Wien
| | Sample_contact_address | Spitalgasse 23
| | Sample_contact_city | Vienna
| | Sample_contact_zip/postal_code | 1090
| | Sample_contact_country | Austria
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM731nnn/GSM731880/suppl/GSM731880_Sample_22.CEL.gz
| | Sample_series_id | GSE29561
| | Sample_data_row_count | 22283
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
