Search results for the GEO ID: GSE29582  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM732377 | GPL1261 |
|
BALB BMDM mock infection 1
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Uninfected BALB BMDM 1
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cell type: Bone Marrow-Derived Macrophages
genetic background: BALB/c
age: 6-7 days incubated after harvesting
infection: uninfected
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Gene expression data from uninfected BALB/c Bone Marrow Derived Macrophages replicate 1
|
| Sample_geo_accession | GSM732377
| | Sample_status | Public on May 29 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | May 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM's were infected with parasite strains for 18 hours before RNA harvesting
| | Sample_growth_protocol_ch1 | BMDM's were plated at 3x10^6 cells per well in 6 well plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | Scanned using Affymetrix Genechip Scanner 3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. We normalized such that the median intensity value was 500. We then set the minimum intensity to be 50.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kenneth,,Hu
| | Sample_contact_email | ken7hu@mit.edu
| | Sample_contact_phone | 713-834-4502
| | Sample_contact_laboratory | Saeij
| | Sample_contact_department | Biology
| | Sample_contact_institute | Massachusetts Institute of Technology
| | Sample_contact_address | 31 Ames Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM732nnn/GSM732377/suppl/GSM732377_Anjali_Shastri_1-Mock1_Anjali_Shastri_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE29582
| | Sample_data_row_count | 45100
| | |
|
GSM732378 | GPL1261 |
|
BALB BMDM mock infection 2
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Uninfected BALB BMDM 2
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cell type: Bone Marrow-Derived Macrophages
genetic background: BALB/c
age: 6-7 days incubated after harvesting
infection: uninfected
|
Gene expression data from uninfected BALB/c Bone Marrow Derived Macrophages replicate 2
|
| Sample_geo_accession | GSM732378
| | Sample_status | Public on May 29 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | May 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM's were infected with parasite strains for 18 hours before RNA harvesting
| | Sample_growth_protocol_ch1 | BMDM's were plated at 3x10^6 cells per well in 6 well plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | Scanned using Affymetrix Genechip Scanner 3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. We normalized such that the median intensity value was 500. We then set the minimum intensity to be 50.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kenneth,,Hu
| | Sample_contact_email | ken7hu@mit.edu
| | Sample_contact_phone | 713-834-4502
| | Sample_contact_laboratory | Saeij
| | Sample_contact_department | Biology
| | Sample_contact_institute | Massachusetts Institute of Technology
| | Sample_contact_address | 31 Ames Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM732nnn/GSM732378/suppl/GSM732378_Anjali_Shastri_2-Mock2_Anjali_Shastri_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE29582
| | Sample_data_row_count | 45100
| | |
|
GSM732379 | GPL1261 |
|
BALB BMDM infected with RH ΔROP16 1
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BALB BMDM infected with RH ΔROP16 for 18hrs 1
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cell type: Bone Marrow-Derived Macrophages
genetic background: BALB/c
age: 6-7 days incubated after harvesting
infection: RH ΔROP16
|
Gene expression data from BALB/c Bone Marrow Derived Macrophages infected with RH ΔROP16 replicate 1
|
| Sample_geo_accession | GSM732379
| | Sample_status | Public on May 29 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | May 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM's were infected with parasite strains for 18 hours before RNA harvesting
| | Sample_growth_protocol_ch1 | BMDM's were plated at 3x10^6 cells per well in 6 well plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | Scanned using Affymetrix Genechip Scanner 3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. We normalized such that the median intensity value was 500. We then set the minimum intensity to be 50.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kenneth,,Hu
| | Sample_contact_email | ken7hu@mit.edu
| | Sample_contact_phone | 713-834-4502
| | Sample_contact_laboratory | Saeij
| | Sample_contact_department | Biology
| | Sample_contact_institute | Massachusetts Institute of Technology
| | Sample_contact_address | 31 Ames Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM732nnn/GSM732379/suppl/GSM732379_Anjali_Shastri_3-ROP16_KO1_Anjali_Shastri_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE29582
| | Sample_data_row_count | 45100
| | |
|
GSM732380 | GPL1261 |
|
BALB BMDM infected with RH ΔROP16 2
|
BALB BMDM infected with RH ΔROP16 for 18hrs 2
|
cell type: Bone Marrow-Derived Macrophages
genetic background: BALB/c
age: 6-7 days incubated after harvesting
infection: RH ΔROP16
|
Gene expression data from BALB/c Bone Marrow Derived Macrophages infected with RH ΔROP16 replicate 2
|
| Sample_geo_accession | GSM732380
| | Sample_status | Public on May 29 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | May 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM's were infected with parasite strains for 18 hours before RNA harvesting
| | Sample_growth_protocol_ch1 | BMDM's were plated at 3x10^6 cells per well in 6 well plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | Scanned using Affymetrix Genechip Scanner 3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. We normalized such that the median intensity value was 500. We then set the minimum intensity to be 50.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kenneth,,Hu
| | Sample_contact_email | ken7hu@mit.edu
| | Sample_contact_phone | 713-834-4502
| | Sample_contact_laboratory | Saeij
| | Sample_contact_department | Biology
| | Sample_contact_institute | Massachusetts Institute of Technology
| | Sample_contact_address | 31 Ames Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM732nnn/GSM732380/suppl/GSM732380_Anjali_Shastri_4-ROP16_KO2_Anjali_Shastri_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE29582
| | Sample_data_row_count | 45100
| | |
|
GSM732381 | GPL1261 |
|
BALB BMDM infected with RH 1
|
BALB BMDM infected with RH for 18hrs 1
|
cell type: Bone Marrow-Derived Macrophages
genetic background: BALB/c
age: 6-7 days incubated after harvesting
infection: RH
|
Gene expression data from BALB/c Bone Marrow Derived Macrophages infected with RH replicate 1
|
| Sample_geo_accession | GSM732381
| | Sample_status | Public on May 29 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | May 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM's were infected with parasite strains for 18 hours before RNA harvesting
| | Sample_growth_protocol_ch1 | BMDM's were plated at 3x10^6 cells per well in 6 well plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | Scanned using Affymetrix Genechip Scanner 3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. We normalized such that the median intensity value was 500. We then set the minimum intensity to be 50.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kenneth,,Hu
| | Sample_contact_email | ken7hu@mit.edu
| | Sample_contact_phone | 713-834-4502
| | Sample_contact_laboratory | Saeij
| | Sample_contact_department | Biology
| | Sample_contact_institute | Massachusetts Institute of Technology
| | Sample_contact_address | 31 Ames Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM732nnn/GSM732381/suppl/GSM732381_Anjali_Shastri_5-RH1_Anjali_Shastri_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE29582
| | Sample_data_row_count | 45100
| | |
|
GSM732382 | GPL1261 |
|
BALB BMDM infected with RH 2
|
BALB BMDM infected with RH for 18hrs 2
|
cell type: Bone Marrow-Derived Macrophages
genetic background: BALB/c
age: 6-7 days incubated after harvesting
infection: RH
|
Gene expression data from BALB/c Bone Marrow Derived Macrophages infected with RH replicate 2
|
| Sample_geo_accession | GSM732382
| | Sample_status | Public on May 29 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | May 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM's were infected with parasite strains for 18 hours before RNA harvesting
| | Sample_growth_protocol_ch1 | BMDM's were plated at 3x10^6 cells per well in 6 well plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | Scanned using Affymetrix Genechip Scanner 3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. We normalized such that the median intensity value was 500. We then set the minimum intensity to be 50.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kenneth,,Hu
| | Sample_contact_email | ken7hu@mit.edu
| | Sample_contact_phone | 713-834-4502
| | Sample_contact_laboratory | Saeij
| | Sample_contact_department | Biology
| | Sample_contact_institute | Massachusetts Institute of Technology
| | Sample_contact_address | 31 Ames Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM732nnn/GSM732382/suppl/GSM732382_Anjali_Shastri_6-RH2_Anjali_Shastri_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE29582
| | Sample_data_row_count | 45100
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