Search results for the GEO ID: GSE29605  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM733547 | GPL570 |
|
CLL B cells high miR-155 unmutated IgVH CLL, I05-13
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: high miR-155
mutation: unmutated IgVH
|
|
| Sample_geo_accession | GSM733547
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733547/suppl/GSM733547_WT_1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733547/suppl/GSM733547_WT_1.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733548 | GPL570 |
|
CLL B cells high miR-155 unmutated IgVH CLL, I08-597
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, lymph node
expression: high miR-155
mutation: unmutated IgVH
|
|
| Sample_geo_accession | GSM733548
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733548/suppl/GSM733548_WT_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733548/suppl/GSM733548_WT_2.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733549 | GPL570 |
|
CLL B cells high miR-155 unmutated IgVH CLL, CLL20
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: high miR-155
mutation: unmutated IgVH
|
|
| Sample_geo_accession | GSM733549
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733549/suppl/GSM733549_D-F20-UmH.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733549/suppl/GSM733549_D-F20-UmH.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733550 | GPL570 |
|
CLL B cells high miR-155 unmutated IgVH CLL, CLL7
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: high miR-155
mutation: unmutated IgVH
|
|
| Sample_geo_accession | GSM733550
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733550/suppl/GSM733550_D-F7-UmH.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733550/suppl/GSM733550_D-F7-UmH.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733551 | GPL570 |
|
CLL B cells high miR-155 unmutated IgVH CLL, CLL62
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: high miR-155
mutation: unmutated IgVH
|
|
| Sample_geo_accession | GSM733551
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733551/suppl/GSM733551_WT_3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733551/suppl/GSM733551_WT_3.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733552 | GPL570 |
|
CLL B cells high miR-155 unmutated IgVH CLL, I08-130
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: high miR-155
mutation: unmutated IgVH
|
|
| Sample_geo_accession | GSM733552
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733552/suppl/GSM733552_D-T22-UmH.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733552/suppl/GSM733552_D-T22-UmH.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733553 | GPL570 |
|
CLL B cells low miR-155 unmutated IgVH CLL, CLL15
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: low miR-155
mutation: unmutated IgVH
|
|
| Sample_geo_accession | GSM733553
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733553/suppl/GSM733553_D-F15A-UmL.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733553/suppl/GSM733553_D-F15A-UmL.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733554 | GPL570 |
|
CLL B cells low miR-155 unmutated IgVH CLL, I07-4971
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, spleen
expression: low miR-155
mutation: unmutated IgVH
|
|
| Sample_geo_accession | GSM733554
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733554/suppl/GSM733554_D-T27-UmL.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733554/suppl/GSM733554_D-T27-UmL.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733555 | GPL570 |
|
CLL B cells low miR-155 unmutated IgVH CLL, CLL24
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: low miR-155
mutation: unmutated IgVH
|
|
| Sample_geo_accession | GSM733555
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733555/suppl/GSM733555_D-F24-UmL.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733555/suppl/GSM733555_D-F24-UmL.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733556 | GPL570 |
|
CLL B cells low miR-155 unmutated IgVH CLL, CLL3
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: low miR-155
mutation: unmutated IgVH
|
|
| Sample_geo_accession | GSM733556
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733556/suppl/GSM733556_D-F3-UmL.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733556/suppl/GSM733556_D-F3-UmL.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733557 | GPL570 |
|
CLL B cells low miR-155 unmutated IgVH CLL, I08-108
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: low miR-155
mutation: unmutated IgVH
|
|
| Sample_geo_accession | GSM733557
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733557/suppl/GSM733557_WT_12.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733557/suppl/GSM733557_WT_12.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733558 | GPL570 |
|
CLL B cells low miR-155 unmutated IgVH CLL, CLL30
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: low miR-155
mutation: unmutated IgVH
|
|
| Sample_geo_accession | GSM733558
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733558/suppl/GSM733558_D-F30-UmL.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733558/suppl/GSM733558_D-F30-UmL.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733559 | GPL570 |
|
CLL B cells high miR-155 mutated IgVH CLL, CLL44
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: high miR-155
mutation: mutated IgVH
|
|
| Sample_geo_accession | GSM733559
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733559/suppl/GSM733559_WT_6.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733559/suppl/GSM733559_WT_6.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733560 | GPL570 |
|
CLL B cells high miR-155 mutated IgVH CLL, CLL9
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: high miR-155
mutation: mutated IgVH
|
|
| Sample_geo_accession | GSM733560
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733560/suppl/GSM733560_D-F9-MH.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733560/suppl/GSM733560_D-F9-MH.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733561 | GPL570 |
|
CLL B cells high miR-155 mutated IgVH CLL, CLL1
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: high miR-155
mutation: mutated IgVH
|
|
| Sample_geo_accession | GSM733561
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733561/suppl/GSM733561_D-F1-MH.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733561/suppl/GSM733561_D-F1-MH.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733562 | GPL570 |
|
CLL B cells high miR-155 mutated IgVH CLL, CLL37
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: high miR-155
mutation: mutated IgVH
|
|
| Sample_geo_accession | GSM733562
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733562/suppl/GSM733562_D-F37--MH.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733562/suppl/GSM733562_D-F37--MH.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733564 | GPL570 |
|
CLL B cells low miR-155 mutated IgVH CLL, CLL18
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: low miR-155
mutation: mutated IgVH
|
|
| Sample_geo_accession | GSM733564
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733564/suppl/GSM733564_D-F18A--ML.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733564/suppl/GSM733564_D-F18A--ML.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733565 | GPL570 |
|
CLL B cells low miR-155 mutated IgVH CLL, CLL56
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: low miR-155
mutation: mutated IgVH
|
|
| Sample_geo_accession | GSM733565
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733565/suppl/GSM733565_WT_7.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733565/suppl/GSM733565_WT_7.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733566 | GPL570 |
|
CLL B cells low miR-155 mutated IgVH CLL, CLL42
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: low miR-155
mutation: mutated IgVH
|
|
| Sample_geo_accession | GSM733566
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733566/suppl/GSM733566_D-F42--ML.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733566/suppl/GSM733566_D-F42--ML.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733567 | GPL570 |
|
CLL B cells low miR-155 mutated IgVH CLL, CLL50
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: low miR-155
mutation: mutated IgVH
|
|
| Sample_geo_accession | GSM733567
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733567/suppl/GSM733567_D-F50--ML.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733567/suppl/GSM733567_D-F50--ML.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
GSM733568 | GPL570 |
|
CLL B cells low miR-155 mutated IgVH CLL, CLL32
|
Chronic lymphocytic leukemia
|
cell type: purified CLL B cells, peripheral blood
expression: low miR-155
mutation: mutated IgVH
|
|
| Sample_geo_accession | GSM733568
| | Sample_status | Public on Jun 01 2011
| | Sample_submission_date | May 27 2011
| | Sample_last_update_date | Jun 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol and purified using the Rneasy minikit (Qiagen, Valencia, CA) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cDNA was prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix)
| | Sample_hyb_protocol | The biotin labeled cDNA was fragmented and hybridized on Human U133 Plus 2 arrays. GeneChips were washed and stained according to manufacturer's protocol
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000 7G
| | Sample_data_processing | MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Piali,,Mukherjee
| | Sample_contact_email | pim2001@med.cornell.edu
| | Sample_contact_department | Physiology and Biophysics
| | Sample_contact_institute | Weill Medical Cornell
| | Sample_contact_address | 1305 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733568/suppl/GSM733568_F32.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM733nnn/GSM733568/suppl/GSM733568_F32.CHP.gz
| | Sample_series_id | GSE29605
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
