Search results for the GEO ID: GSE29630  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM734352 | GPL570 |
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AGS cells_control
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AGS cells_control
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cell line: gastric cancer cell line AGS
genotype/variation: control
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Negative_2.CEL
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| Sample_geo_accession | GSM734352
| | Sample_status | Public on May 31 2011
| | Sample_submission_date | May 31 2011
| | Sample_last_update_date | May 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Genechip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kyung-Hee,,Chun
| | Sample_contact_email | khchun@ncc.re.kr
| | Sample_contact_phone | +82319202281
| | Sample_contact_fax | +82319202299
| | Sample_contact_laboratory | Gastric Cancer Branch
| | Sample_contact_department | Division of Translational & Clinical Research I
| | Sample_contact_institute | National Cancer Center
| | Sample_contact_address | 323 ilsan-ro
| | Sample_contact_city | Goyang-si
| | Sample_contact_state | Gyeonggi-do
| | Sample_contact_zip/postal_code | 410-749
| | Sample_contact_country | South Korea
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM734nnn/GSM734352/suppl/GSM734352.CEL.gz
| | Sample_series_id | GSE29630
| | Sample_data_row_count | 54675
| | |
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GSM734353 | GPL570 |
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AGS cells_galectin-3 silenced
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AGS cells_galectin-3 silenced
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cell line: gastric cancer cell line AGS
genotype/variation: galectin-3 silenced
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siRNA3_2.CEL
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| Sample_geo_accession | GSM734353
| | Sample_status | Public on May 31 2011
| | Sample_submission_date | May 31 2011
| | Sample_last_update_date | May 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Genechip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kyung-Hee,,Chun
| | Sample_contact_email | khchun@ncc.re.kr
| | Sample_contact_phone | +82319202281
| | Sample_contact_fax | +82319202299
| | Sample_contact_laboratory | Gastric Cancer Branch
| | Sample_contact_department | Division of Translational & Clinical Research I
| | Sample_contact_institute | National Cancer Center
| | Sample_contact_address | 323 ilsan-ro
| | Sample_contact_city | Goyang-si
| | Sample_contact_state | Gyeonggi-do
| | Sample_contact_zip/postal_code | 410-749
| | Sample_contact_country | South Korea
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM734nnn/GSM734353/suppl/GSM734353.CEL.gz
| | Sample_series_id | GSE29630
| | Sample_data_row_count | 54675
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