Search results for the GEO ID: GSE29674 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM735944 | GPL1261 |
|
Islets_wt_1
|
Five-week-old islets from wt mouse
|
gender: female
age: 5 weeks
strain: C57 on a 129 background
tissue: pancreatic endocrine islets
|
281wt
|
Sample_geo_accession | GSM735944
| Sample_status | Public on Jun 02 2011
| Sample_submission_date | Jun 01 2011
| Sample_last_update_date | Jun 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Animals were kept under normal conditions and sacrificed when reaching five weeks of age.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Isolated islets (~100) were pooled from each animal and RNA was isolated with the QIAGEN RNeasy micro kit. Quality was assessed using the Agilent Bioanalyzer and the Agilent RNA 6000 nano kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 100 ng of RNA, using a two-cycle amplification step.
| Sample_hyb_protocol | GeneChip Mouse Genome 430 2.0 Array were hybridized for 16 hours in a 45C incubator, rotated at 60 rpm. The arrays were then washed and stained using the Fluidics Station 450.
| Sample_scan_protocol | Chips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The gene expression data was carried out in the publicly available statistical computing language R (http://www.r-project.org) using packages available from the Bioconductor project (www.bioconductor.org). The raw data was normalized using the GCRMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Margareta,H,Lejonklou
| Sample_contact_email | margareta.halin@medsci.uu.se
| Sample_contact_phone | +46-18-6114913
| Sample_contact_laboratory | Endocrine Tumor Biology
| Sample_contact_department | Medical Sciences
| Sample_contact_institute | Uppsala University Hospital
| Sample_contact_address | Entrance 70, UAS
| Sample_contact_city | Uppsala
| Sample_contact_zip/postal_code | 751 85
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735944/suppl/GSM735944.CEL.gz
| Sample_series_id | GSE29674
| Sample_data_row_count | 45101
| |
|
GSM735945 | GPL1261 |
|
Islets_wt_2
|
Five-week-old islets from wt mouse
|
gender: female
age: 5 weeks
strain: C57 on a 129 background
tissue: pancreatic endocrine islets
|
440Bwt
|
Sample_geo_accession | GSM735945
| Sample_status | Public on Jun 02 2011
| Sample_submission_date | Jun 01 2011
| Sample_last_update_date | Jun 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Animals were kept under normal conditions and sacrificed when reaching five weeks of age.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Isolated islets (~100) were pooled from each animal and RNA was isolated with the QIAGEN RNeasy micro kit. Quality was assessed using the Agilent Bioanalyzer and the Agilent RNA 6000 nano kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 100 ng of RNA, using a two-cycle amplification step.
| Sample_hyb_protocol | GeneChip Mouse Genome 430 2.0 Array were hybridized for 16 hours in a 45C incubator, rotated at 60 rpm. The arrays were then washed and stained using the Fluidics Station 450.
| Sample_scan_protocol | Chips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The gene expression data was carried out in the publicly available statistical computing language R (http://www.r-project.org) using packages available from the Bioconductor project (www.bioconductor.org). The raw data was normalized using the GCRMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Margareta,H,Lejonklou
| Sample_contact_email | margareta.halin@medsci.uu.se
| Sample_contact_phone | +46-18-6114913
| Sample_contact_laboratory | Endocrine Tumor Biology
| Sample_contact_department | Medical Sciences
| Sample_contact_institute | Uppsala University Hospital
| Sample_contact_address | Entrance 70, UAS
| Sample_contact_city | Uppsala
| Sample_contact_zip/postal_code | 751 85
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735945/suppl/GSM735945.CEL.gz
| Sample_series_id | GSE29674
| Sample_data_row_count | 45101
| |
|
GSM735946 | GPL1261 |
|
Islets_wt_3
|
Five-week-old islets from wt mouse
|
gender: female
age: 5 weeks
strain: C57 on a 129 background
tissue: pancreatic endocrine islets
|
444Awt
|
Sample_geo_accession | GSM735946
| Sample_status | Public on Jun 02 2011
| Sample_submission_date | Jun 01 2011
| Sample_last_update_date | Jun 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Animals were kept under normal conditions and sacrificed when reaching five weeks of age.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Isolated islets (~100) were pooled from each animal and RNA was isolated with the QIAGEN RNeasy micro kit. Quality was assessed using the Agilent Bioanalyzer and the Agilent RNA 6000 nano kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 100 ng of RNA, using a two-cycle amplification step.
| Sample_hyb_protocol | GeneChip Mouse Genome 430 2.0 Array were hybridized for 16 hours in a 45C incubator, rotated at 60 rpm. The arrays were then washed and stained using the Fluidics Station 450.
| Sample_scan_protocol | Chips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The gene expression data was carried out in the publicly available statistical computing language R (http://www.r-project.org) using packages available from the Bioconductor project (www.bioconductor.org). The raw data was normalized using the GCRMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Margareta,H,Lejonklou
| Sample_contact_email | margareta.halin@medsci.uu.se
| Sample_contact_phone | +46-18-6114913
| Sample_contact_laboratory | Endocrine Tumor Biology
| Sample_contact_department | Medical Sciences
| Sample_contact_institute | Uppsala University Hospital
| Sample_contact_address | Entrance 70, UAS
| Sample_contact_city | Uppsala
| Sample_contact_zip/postal_code | 751 85
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735946/suppl/GSM735946.CEL.gz
| Sample_series_id | GSE29674
| Sample_data_row_count | 45101
| |
|
GSM735947 | GPL1261 |
|
Islets_wt_4
|
Five-week-old islets from wt mouse
|
gender: female
age: 5 weeks
strain: C57 on a 129 background
tissue: pancreatic endocrine islets
|
462Bwt
|
Sample_geo_accession | GSM735947
| Sample_status | Public on Jun 02 2011
| Sample_submission_date | Jun 01 2011
| Sample_last_update_date | Jun 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Animals were kept under normal conditions and sacrificed when reaching five weeks of age.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Isolated islets (~100) were pooled from each animal and RNA was isolated with the QIAGEN RNeasy micro kit. Quality was assessed using the Agilent Bioanalyzer and the Agilent RNA 6000 nano kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 100 ng of RNA, using a two-cycle amplification step.
| Sample_hyb_protocol | GeneChip Mouse Genome 430 2.0 Array were hybridized for 16 hours in a 45C incubator, rotated at 60 rpm. The arrays were then washed and stained using the Fluidics Station 450.
| Sample_scan_protocol | Chips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The gene expression data was carried out in the publicly available statistical computing language R (http://www.r-project.org) using packages available from the Bioconductor project (www.bioconductor.org). The raw data was normalized using the GCRMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Margareta,H,Lejonklou
| Sample_contact_email | margareta.halin@medsci.uu.se
| Sample_contact_phone | +46-18-6114913
| Sample_contact_laboratory | Endocrine Tumor Biology
| Sample_contact_department | Medical Sciences
| Sample_contact_institute | Uppsala University Hospital
| Sample_contact_address | Entrance 70, UAS
| Sample_contact_city | Uppsala
| Sample_contact_zip/postal_code | 751 85
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735947/suppl/GSM735947.CEL.gz
| Sample_series_id | GSE29674
| Sample_data_row_count | 45101
| |
|
GSM735948 | GPL1261 |
|
Islets_wt_5
|
Five-week-old islets from wt mouse
|
gender: female
age: 5 weeks
strain: C57 on a 129 background
tissue: pancreatic endocrine islets
|
471Awt
|
Sample_geo_accession | GSM735948
| Sample_status | Public on Jun 02 2011
| Sample_submission_date | Jun 01 2011
| Sample_last_update_date | Jun 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Animals were kept under normal conditions and sacrificed when reaching five weeks of age.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Isolated islets (~100) were pooled from each animal and RNA was isolated with the QIAGEN RNeasy micro kit. Quality was assessed using the Agilent Bioanalyzer and the Agilent RNA 6000 nano kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 100 ng of RNA, using a two-cycle amplification step.
| Sample_hyb_protocol | GeneChip Mouse Genome 430 2.0 Array were hybridized for 16 hours in a 45C incubator, rotated at 60 rpm. The arrays were then washed and stained using the Fluidics Station 450.
| Sample_scan_protocol | Chips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The gene expression data was carried out in the publicly available statistical computing language R (http://www.r-project.org) using packages available from the Bioconductor project (www.bioconductor.org). The raw data was normalized using the GCRMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Margareta,H,Lejonklou
| Sample_contact_email | margareta.halin@medsci.uu.se
| Sample_contact_phone | +46-18-6114913
| Sample_contact_laboratory | Endocrine Tumor Biology
| Sample_contact_department | Medical Sciences
| Sample_contact_institute | Uppsala University Hospital
| Sample_contact_address | Entrance 70, UAS
| Sample_contact_city | Uppsala
| Sample_contact_zip/postal_code | 751 85
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735948/suppl/GSM735948.CEL.gz
| Sample_series_id | GSE29674
| Sample_data_row_count | 45101
| |
|
GSM735949 | GPL1261 |
|
Islets_hz_1
|
Five-week-old islets from hz mouse
|
gender: female
age: 5 weeks
strain: C57 on a 129 background
tissue: pancreatic endocrine islets
|
450Bhz
|
Sample_geo_accession | GSM735949
| Sample_status | Public on Jun 02 2011
| Sample_submission_date | Jun 01 2011
| Sample_last_update_date | Jun 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Animals were kept under normal conditions and sacrificed when reaching five weeks of age.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Isolated islets (~100) were pooled from each animal and RNA was isolated with the QIAGEN RNeasy micro kit. Quality was assessed using the Agilent Bioanalyzer and the Agilent RNA 6000 nano kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 100 ng of RNA, using a two-cycle amplification step.
| Sample_hyb_protocol | GeneChip Mouse Genome 430 2.0 Array were hybridized for 16 hours in a 45C incubator, rotated at 60 rpm. The arrays were then washed and stained using the Fluidics Station 450.
| Sample_scan_protocol | Chips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The gene expression data was carried out in the publicly available statistical computing language R (http://www.r-project.org) using packages available from the Bioconductor project (www.bioconductor.org). The raw data was normalized using the GCRMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Margareta,H,Lejonklou
| Sample_contact_email | margareta.halin@medsci.uu.se
| Sample_contact_phone | +46-18-6114913
| Sample_contact_laboratory | Endocrine Tumor Biology
| Sample_contact_department | Medical Sciences
| Sample_contact_institute | Uppsala University Hospital
| Sample_contact_address | Entrance 70, UAS
| Sample_contact_city | Uppsala
| Sample_contact_zip/postal_code | 751 85
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735949/suppl/GSM735949.CEL.gz
| Sample_series_id | GSE29674
| Sample_data_row_count | 45101
| |
|
GSM735950 | GPL1261 |
|
Islets_hz_2
|
Five-week-old islets from hz mouse
|
gender: female
age: 5 weeks
strain: C57 on a 129 background
tissue: pancreatic endocrine islets
|
463Ahz
|
Sample_geo_accession | GSM735950
| Sample_status | Public on Jun 02 2011
| Sample_submission_date | Jun 01 2011
| Sample_last_update_date | Jun 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Animals were kept under normal conditions and sacrificed when reaching five weeks of age.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Isolated islets (~100) were pooled from each animal and RNA was isolated with the QIAGEN RNeasy micro kit. Quality was assessed using the Agilent Bioanalyzer and the Agilent RNA 6000 nano kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 100 ng of RNA, using a two-cycle amplification step.
| Sample_hyb_protocol | GeneChip Mouse Genome 430 2.0 Array were hybridized for 16 hours in a 45C incubator, rotated at 60 rpm. The arrays were then washed and stained using the Fluidics Station 450.
| Sample_scan_protocol | Chips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The gene expression data was carried out in the publicly available statistical computing language R (http://www.r-project.org) using packages available from the Bioconductor project (www.bioconductor.org). The raw data was normalized using the GCRMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Margareta,H,Lejonklou
| Sample_contact_email | margareta.halin@medsci.uu.se
| Sample_contact_phone | +46-18-6114913
| Sample_contact_laboratory | Endocrine Tumor Biology
| Sample_contact_department | Medical Sciences
| Sample_contact_institute | Uppsala University Hospital
| Sample_contact_address | Entrance 70, UAS
| Sample_contact_city | Uppsala
| Sample_contact_zip/postal_code | 751 85
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735950/suppl/GSM735950.CEL.gz
| Sample_series_id | GSE29674
| Sample_data_row_count | 45101
| |
|
GSM735951 | GPL1261 |
|
Islets_hz_3
|
Five-week-old islets from hz mouse
|
gender: female
age: 5 weeks
strain: C57 on a 129 background
tissue: pancreatic endocrine islets
|
464Ahz
|
Sample_geo_accession | GSM735951
| Sample_status | Public on Jun 02 2011
| Sample_submission_date | Jun 01 2011
| Sample_last_update_date | Jun 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Animals were kept under normal conditions and sacrificed when reaching five weeks of age.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Isolated islets (~100) were pooled from each animal and RNA was isolated with the QIAGEN RNeasy micro kit. Quality was assessed using the Agilent Bioanalyzer and the Agilent RNA 6000 nano kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 100 ng of RNA, using a two-cycle amplification step.
| Sample_hyb_protocol | GeneChip Mouse Genome 430 2.0 Array were hybridized for 16 hours in a 45C incubator, rotated at 60 rpm. The arrays were then washed and stained using the Fluidics Station 450.
| Sample_scan_protocol | Chips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The gene expression data was carried out in the publicly available statistical computing language R (http://www.r-project.org) using packages available from the Bioconductor project (www.bioconductor.org). The raw data was normalized using the GCRMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Margareta,H,Lejonklou
| Sample_contact_email | margareta.halin@medsci.uu.se
| Sample_contact_phone | +46-18-6114913
| Sample_contact_laboratory | Endocrine Tumor Biology
| Sample_contact_department | Medical Sciences
| Sample_contact_institute | Uppsala University Hospital
| Sample_contact_address | Entrance 70, UAS
| Sample_contact_city | Uppsala
| Sample_contact_zip/postal_code | 751 85
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735951/suppl/GSM735951.CEL.gz
| Sample_series_id | GSE29674
| Sample_data_row_count | 45101
| |
|
GSM735952 | GPL1261 |
|
Islets_hz_4
|
Five-week-old islets from hz mouse
|
gender: female
age: 5 weeks
strain: C57 on a 129 background
tissue: pancreatic endocrine islets
|
467Ahz
|
Sample_geo_accession | GSM735952
| Sample_status | Public on Jun 02 2011
| Sample_submission_date | Jun 01 2011
| Sample_last_update_date | Jun 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Animals were kept under normal conditions and sacrificed when reaching five weeks of age.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Isolated islets (~100) were pooled from each animal and RNA was isolated with the QIAGEN RNeasy micro kit. Quality was assessed using the Agilent Bioanalyzer and the Agilent RNA 6000 nano kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 100 ng of RNA, using a two-cycle amplification step.
| Sample_hyb_protocol | GeneChip Mouse Genome 430 2.0 Array were hybridized for 16 hours in a 45C incubator, rotated at 60 rpm. The arrays were then washed and stained using the Fluidics Station 450.
| Sample_scan_protocol | Chips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The gene expression data was carried out in the publicly available statistical computing language R (http://www.r-project.org) using packages available from the Bioconductor project (www.bioconductor.org). The raw data was normalized using the GCRMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Margareta,H,Lejonklou
| Sample_contact_email | margareta.halin@medsci.uu.se
| Sample_contact_phone | +46-18-6114913
| Sample_contact_laboratory | Endocrine Tumor Biology
| Sample_contact_department | Medical Sciences
| Sample_contact_institute | Uppsala University Hospital
| Sample_contact_address | Entrance 70, UAS
| Sample_contact_city | Uppsala
| Sample_contact_zip/postal_code | 751 85
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735952/suppl/GSM735952.CEL.gz
| Sample_series_id | GSE29674
| Sample_data_row_count | 45101
| |
|
GSM735953 | GPL1261 |
|
Islets_hz_5
|
Five-week-old islets from hz mouse
|
gender: female
age: 5 weeks
strain: C57 on a 129 background
tissue: pancreatic endocrine islets
|
870hz
|
Sample_geo_accession | GSM735953
| Sample_status | Public on Jun 02 2011
| Sample_submission_date | Jun 01 2011
| Sample_last_update_date | Jun 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Animals were kept under normal conditions and sacrificed when reaching five weeks of age.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Isolated islets (~100) were pooled from each animal and RNA was isolated with the QIAGEN RNeasy micro kit. Quality was assessed using the Agilent Bioanalyzer and the Agilent RNA 6000 nano kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 100 ng of RNA, using a two-cycle amplification step.
| Sample_hyb_protocol | GeneChip Mouse Genome 430 2.0 Array were hybridized for 16 hours in a 45C incubator, rotated at 60 rpm. The arrays were then washed and stained using the Fluidics Station 450.
| Sample_scan_protocol | Chips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The gene expression data was carried out in the publicly available statistical computing language R (http://www.r-project.org) using packages available from the Bioconductor project (www.bioconductor.org). The raw data was normalized using the GCRMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Margareta,H,Lejonklou
| Sample_contact_email | margareta.halin@medsci.uu.se
| Sample_contact_phone | +46-18-6114913
| Sample_contact_laboratory | Endocrine Tumor Biology
| Sample_contact_department | Medical Sciences
| Sample_contact_institute | Uppsala University Hospital
| Sample_contact_address | Entrance 70, UAS
| Sample_contact_city | Uppsala
| Sample_contact_zip/postal_code | 751 85
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735953/suppl/GSM735953.CEL.gz
| Sample_series_id | GSE29674
| Sample_data_row_count | 45101
| |
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