Search results for the GEO ID: GSE29680  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM735987 | GPL201 |
|
blood mononuclear leukocytes-before n-3 fatty acid suppl patient 1
|
Human blood mononuclear leukocytes before n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: none
|
mononuclear leukocytes baseline N3 FA group
|
| Sample_geo_accession | GSM735987
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735987/suppl/GSM735987.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM735988 | GPL201 |
|
blood mononuclear leukocytes-before n-3 fatty acid suppl patient 2
|
Human blood mononuclear leukocytes before n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: none
|
mononuclear leukocytes baseline N3 FA group
|
| Sample_geo_accession | GSM735988
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735988/suppl/GSM735988.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM735989 | GPL201 |
|
blood mononuclear leukocytes-before n-3 fatty acid suppl patient 3
|
Human blood mononuclear leukocytes before n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: none
|
mononuclear leukocytes baseline N3 FA group
|
| Sample_geo_accession | GSM735989
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735989/suppl/GSM735989.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM735990 | GPL201 |
|
blood mononuclear leukocytes-before n-3 fatty acid suppl patient 4
|
Human blood mononuclear leukocytes before n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: none
|
mononuclear leukocytes baseline N3 FA group
|
| Sample_geo_accession | GSM735990
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735990/suppl/GSM735990.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM735992 | GPL201 |
|
blood mononuclear leukocytes-before n-3 fatty acid suppl patient 7
|
Human blood mononuclear leukocytes before n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: none
|
mononuclear leukocytes baseline N3 FA group
|
| Sample_geo_accession | GSM735992
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735992/suppl/GSM735992.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM735993 | GPL201 |
|
blood mononuclear leukocytes-before n-3 fatty acid suppl patient 8
|
Human blood mononuclear leukocytes before n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: none
|
mononuclear leukocytes baseline N3 FA group
|
| Sample_geo_accession | GSM735993
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735993/suppl/GSM735993.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM735994 | GPL201 |
|
blood mononuclear leukocytes-before n-3 fatty acid suppl patient 9
|
Human blood mononuclear leukocytes before n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: none
|
mononuclear leukocytes baseline N3 FA group
|
| Sample_geo_accession | GSM735994
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735994/suppl/GSM735994.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM735995 | GPL201 |
|
blood mononuclear leukocytes-before n-3 fatty acid suppl patient 10
|
Human blood mononuclear leukocytes before n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: none
|
mononuclear leukocytes baseline N3 FA group
|
| Sample_geo_accession | GSM735995
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735995/suppl/GSM735995.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM735996 | GPL201 |
|
blood mononuclear leukocytes-before n-3 fatty acid suppl patient 11
|
Human blood mononuclear leukocytes before n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: none
|
mononuclear leukocytes baseline N3 FA group
|
| Sample_geo_accession | GSM735996
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735996/suppl/GSM735996.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM735997 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of n-3 fatty acid suppl patient 1
|
Human blood mononuclear leukocytes after 6 mo of n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of n-3 fatty acid supplementation
|
mononuclear leukocytes treated 6mo N3 FA group
|
| Sample_geo_accession | GSM735997
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735997/suppl/GSM735997.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM735998 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of n-3 fatty acid suppl patient 2
|
Human blood mononuclear leukocytes after 6 mo of n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of n-3 fatty acid supplementation
|
mononuclear leukocytes treated 6mo N3 FA group
|
| Sample_geo_accession | GSM735998
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735998/suppl/GSM735998.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM735999 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of n-3 fatty acid suppl patient 3
|
Human blood mononuclear leukocytes after 6 mo of n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of n-3 fatty acid supplementation
|
mononuclear leukocytes treated 6mo N3 FA group
|
| Sample_geo_accession | GSM735999
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM735nnn/GSM735999/suppl/GSM735999.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736000 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of n-3 fatty acid suppl patient 4
|
Human blood mononuclear leukocytes after 6 mo of n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of n-3 fatty acid supplementation
|
mononuclear leukocytes treated 6mo N3 FA group
|
| Sample_geo_accession | GSM736000
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736000/suppl/GSM736000.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736001 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of n-3 fatty acid suppl patient 5
|
Human blood mononuclear leukocytes after 6 mo of n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of n-3 fatty acid supplementation
|
mononuclear leukocytes treated 6mo N3 FA group
|
| Sample_geo_accession | GSM736001
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736001/suppl/GSM736001.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736002 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of n-3 fatty acid suppl patient 6
|
Human blood mononuclear leukocytes after 6 mo of n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of n-3 fatty acid supplementation
|
mononuclear leukocytes treated 6mo N3 FA group
|
| Sample_geo_accession | GSM736002
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736002/suppl/GSM736002.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736003 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of n-3 fatty acid suppl patient 7
|
Human blood mononuclear leukocytes after 6 mo of n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of n-3 fatty acid supplementation
|
mononuclear leukocytes treated 6mo N3 FA group
|
| Sample_geo_accession | GSM736003
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736003/suppl/GSM736003.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736004 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of n-3 fatty acid suppl patient 8
|
Human blood mononuclear leukocytes after 6 mo of n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of n-3 fatty acid supplementation
|
mononuclear leukocytes treated 6mo N3 FA group
|
| Sample_geo_accession | GSM736004
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736004/suppl/GSM736004.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736005 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of n-3 fatty acid suppl patient 9
|
Human blood mononuclear leukocytes after 6 mo of n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of n-3 fatty acid supplementation
|
mononuclear leukocytes treated 6mo N3 FA group
|
| Sample_geo_accession | GSM736005
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736005/suppl/GSM736005.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736006 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of n-3 fatty acid suppl patient 10
|
Human blood mononuclear leukocytes after 6 mo of n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of n-3 fatty acid supplementation
|
mononuclear leukocytes treated 6mo N3 FA group
|
| Sample_geo_accession | GSM736006
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736006/suppl/GSM736006.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736007 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of n-3 fatty acid suppl patient 11
|
Human blood mononuclear leukocytes after 6 mo of n-3 fatty acid supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of n-3 fatty acid supplementation
|
mononuclear leukocytes treated 6mo N3 FA group
|
| Sample_geo_accession | GSM736007
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736007/suppl/GSM736007.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736008 | GPL201 |
|
blood mononuclear leukocytes-before placebo suppl patient 12
|
Human blood mononuclear leukocytes before placebo supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: none
|
mononuclear leukocytes baseline Placebo group
|
| Sample_geo_accession | GSM736008
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736008/suppl/GSM736008.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736009 | GPL201 |
|
blood mononuclear leukocytes-before placebo suppl patient 13
|
Human blood mononuclear leukocytes before placebo supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: none
|
mononuclear leukocytes baseline Placebo group
|
| Sample_geo_accession | GSM736009
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736009/suppl/GSM736009.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736010 | GPL201 |
|
blood mononuclear leukocytes-before placebo suppl patient 14
|
Human blood mononuclear leukocytes before placebo supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: none
|
mononuclear leukocytes baseline Placebo group
|
| Sample_geo_accession | GSM736010
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736010/suppl/GSM736010.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736011 | GPL201 |
|
blood mononuclear leukocytes-before placebo suppl patient 15
|
Human blood mononuclear leukocytes before placebo supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: none
|
mononuclear leukocytes baseline Placebo group
|
| Sample_geo_accession | GSM736011
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736011/suppl/GSM736011.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736012 | GPL201 |
|
blood mononuclear leukocytes-before placebo suppl patient 16
|
Human blood mononuclear leukocytes before placebo supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: none
|
mononuclear leukocytes baseline Placebo group
|
| Sample_geo_accession | GSM736012
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736012/suppl/GSM736012.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736013 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of placebo suppl patient 12
|
Human blood mononuclear leukocytes after 6 mo of placebo supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of placebo supplementation
|
mononuclear leukocytes treated 6mo Placebo group
|
| Sample_geo_accession | GSM736013
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736013/suppl/GSM736013.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736015 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of placebo suppl patient 14
|
Human blood mononuclear leukocytes after 6 mo of placebo supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of placebo supplementation
|
mononuclear leukocytes treated 6mo Placebo group
|
| Sample_geo_accession | GSM736015
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736015/suppl/GSM736015.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736016 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of placebo suppl patient 15
|
Human blood mononuclear leukocytes after 6 mo of placebo supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of placebo supplementation
|
mononuclear leukocytes treated 6mo Placebo group
|
| Sample_geo_accession | GSM736016
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736016/suppl/GSM736016.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
GSM736017 | GPL201 |
|
blood mononuclear leukocytes-after 6 mo of placebo suppl patient 16
|
Human blood mononuclear leukocytes after 6 mo of placebo supplementation
|
disease state: Alzheimers disease
cell type: mononuclear leukocytes
treatment: after 6 mo of placebo supplementation
|
mononuclear leukocytes treated 6mo Placebo group
|
| Sample_geo_accession | GSM736017
| | Sample_status | Public on May 24 2012
| | Sample_submission_date | Jun 01 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from blood mononuclear leukocytes using a QIAGEN RNeasy Mini Kit and treated with RNase-free DNase (QIAGEN GmbH 40724 Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified and labeled using the Whole Transcript (WT) Sense Target Labeling Protocol
| | Sample_hyb_protocol | From non-degraded high-quality total RNA we prepared and hybridized biotinylated complementary RNA to Gene 1.0 ST Arrays, and then washed, stained and scanned slides using standardized protocols (Affymetrix Inc., Santa Clara, CA).
| | Sample_scan_protocol | We used standardized Affymetrix protocols (Affymetrix Inc., Santa Clara, CA)
| | Sample_data_processing | Subsequent data analyses were performed using the Affymetrix GeneChip Operating Software (GCOS) Version 1.4. To allow comparisons of transcript levels between samples, all samples were subjected to an all-probe set scaling to target signal 100.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Inger,,Vedin
| | Sample_contact_email | inger.vedin@ki.se
| | Sample_contact_laboratory | CIHF
| | Sample_contact_department | Department of medicin
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Hälsovägen 7-9
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | 141 86 Stockholm
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736017/suppl/GSM736017.CEL.gz
| | Sample_series_id | GSE29680
| | Sample_data_row_count | 8793
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
