Search results for the GEO ID: GSE29684  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM736290 | GPL570 |
|
mad767
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736290
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736290/suppl/GSM736290.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736291 | GPL570 |
|
mad768
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736291
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736291/suppl/GSM736291.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736292 | GPL570 |
|
mad769
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736292
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736292/suppl/GSM736292.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736293 | GPL570 |
|
mad770
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736293
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736293/suppl/GSM736293.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736294 | GPL570 |
|
mad771
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736294
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736294/suppl/GSM736294.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736295 | GPL570 |
|
mad772
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736295
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736295/suppl/GSM736295.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736296 | GPL570 |
|
mad773
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736296
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736296/suppl/GSM736296.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736297 | GPL570 |
|
mad774
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736297
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736297/suppl/GSM736297.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736298 | GPL570 |
|
mad775
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736298
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736298/suppl/GSM736298.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736299 | GPL570 |
|
mad776
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736299
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736299/suppl/GSM736299.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736300 | GPL570 |
|
mad777
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736300
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736300/suppl/GSM736300.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736301 | GPL570 |
|
mad778
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736301
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736301/suppl/GSM736301.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736302 | GPL570 |
|
mad779
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736302
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736302/suppl/GSM736302.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736303 | GPL570 |
|
mad780
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736303
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736303/suppl/GSM736303.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736304 | GPL570 |
|
mad781
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736304
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736304/suppl/GSM736304.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736305 | GPL570 |
|
mad782
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736305
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736305/suppl/GSM736305.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736306 | GPL570 |
|
mad783
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736306
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736306/suppl/GSM736306.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736307 | GPL570 |
|
mad784
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736307
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736307/suppl/GSM736307.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736308 | GPL570 |
|
mad785
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736308
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736308/suppl/GSM736308.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
GSM736309 | GPL570 |
|
mad786
|
retinoblastoma
|
cell type: single retinoblastoma tumor cell
|
single tumor cell
|
| Sample_geo_accession | GSM736309
| | Sample_status | Public on Jun 07 2011
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | Jun 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | all samples are untreated tissues
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | details and references in manuscript, singel cell methodolgy and RNA amplification method developed by Cepko lab referenced in text
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymterix standard methods were applied after Cepko isolation anmd RNA amplification
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.5 using the RMA algorithmn
| | Sample_platform_id | GPL570
| | Sample_contact_name | David,,Finkelstein
| | Sample_contact_email | david.finkelstein@stjude.org
| | Sample_contact_phone | 9014953931
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | St Jude Children's Research Hospital
| | Sample_contact_address | 332 N. Lauderdale St.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736309/suppl/GSM736309.CEL.gz
| | Sample_series_id | GSE29684
| | Sample_series_id | GSE29686
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
