Search results for the GEO ID: GSE29688  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM736447 | GPL1261 |
|
SN12C_xenograft_biorep1
|
SN12C_xenograft
|
RCC cell line type: Primary RCC cell line
|
Expression data from RCC cell lines to study tumor-stroma interaction in xenograft model
|
| Sample_geo_accession | GSM736447
| | Sample_status | Public on May 30 2012
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | May 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MouseGenome 430 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736447/suppl/GSM736447.CEL.gz
| | Sample_series_id | GSE29688
| | Sample_data_row_count | 45101
| | |
|
GSM736448 | GPL1261 |
|
SN12C_xenograft_biorep2
|
SN12C_xenograft
|
RCC cell line type: Primary RCC cell line
|
Expression data from RCC cell lines to study tumor-stroma interaction in xenograft model
|
| Sample_geo_accession | GSM736448
| | Sample_status | Public on May 30 2012
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | May 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MouseGenome 430 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736448/suppl/GSM736448.CEL.gz
| | Sample_series_id | GSE29688
| | Sample_data_row_count | 45101
| | |
|
GSM736449 | GPL1261 |
|
SN12C_xenograft_biorep3
|
SN12C_xenograft
|
RCC cell line type: Primary RCC cell line
|
Expression data from RCC cell lines to study tumor-stroma interaction in xenograft model
|
| Sample_geo_accession | GSM736449
| | Sample_status | Public on May 30 2012
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | May 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MouseGenome 430 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736449/suppl/GSM736449.CEL.gz
| | Sample_series_id | GSE29688
| | Sample_data_row_count | 45101
| | |
|
GSM736450 | GPL1261 |
|
SN12C_xenograft_biorep4
|
SN12C_xenograft
|
RCC cell line type: Primary RCC cell line
|
Expression data from RCC cell lines to study tumor-stroma interaction in xenograft model
|
| Sample_geo_accession | GSM736450
| | Sample_status | Public on May 30 2012
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | May 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MouseGenome 430 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736450/suppl/GSM736450.CEL.gz
| | Sample_series_id | GSE29688
| | Sample_data_row_count | 45101
| | |
|
GSM736451 | GPL1261 |
|
LM2_xenograft_biorep1
|
LM2_xenograft
|
RCC cell line type: Metastatic RCC cell line
|
Expression data from RCC cell lines to study tumor-stroma interaction in xenograft model
|
| Sample_geo_accession | GSM736451
| | Sample_status | Public on May 30 2012
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | May 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MouseGenome 430 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736451/suppl/GSM736451.CEL.gz
| | Sample_series_id | GSE29688
| | Sample_data_row_count | 45101
| | |
|
GSM736452 | GPL1261 |
|
LM2_xenograft_biorep2
|
LM2_xenograft
|
RCC cell line type: Metastatic RCC cell line
|
Expression data from RCC cell lines to study tumor-stroma interaction in xenograft model
|
| Sample_geo_accession | GSM736452
| | Sample_status | Public on May 30 2012
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | May 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MouseGenome 430 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736452/suppl/GSM736452.CEL.gz
| | Sample_series_id | GSE29688
| | Sample_data_row_count | 45101
| | |
|
GSM736453 | GPL1261 |
|
LM2_xenograft_biorep3
|
LM2_xenograft
|
RCC cell line type: Metastatic RCC cell line
|
Expression data from RCC cell lines to study tumor-stroma interaction in xenograft model
|
| Sample_geo_accession | GSM736453
| | Sample_status | Public on May 30 2012
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | May 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MouseGenome 430 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736453/suppl/GSM736453.CEL.gz
| | Sample_series_id | GSE29688
| | Sample_data_row_count | 45101
| | |
|
GSM736454 | GPL1261 |
|
LM2_xenograft_biorep4
|
LM2_xenograft
|
RCC cell line type: Metastatic RCC cell line
|
Expression data from RCC cell lines to study tumor-stroma interaction in xenograft model
|
| Sample_geo_accession | GSM736454
| | Sample_status | Public on May 30 2012
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | May 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MouseGenome 430 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736454/suppl/GSM736454.CEL.gz
| | Sample_series_id | GSE29688
| | Sample_data_row_count | 45101
| | |
|
GSM736455 | GPL1261 |
|
Mouse_NormalLung_biorep1
|
Mouse_NormalLung
|
RCC cell line type: none
tissue: normal mouse lung (reference)
|
Expression data from RCC cell lines to study tumor-stroma interaction in xenograft model
|
| Sample_geo_accession | GSM736455
| | Sample_status | Public on May 30 2012
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | May 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MouseGenome 430 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736455/suppl/GSM736455.CEL.gz
| | Sample_series_id | GSE29688
| | Sample_data_row_count | 45101
| | |
|
GSM736456 | GPL1261 |
|
Mouse_NormalLung_biorep2
|
Mouse_NormalLung
|
RCC cell line type: none
tissue: normal mouse lung (reference)
|
Expression data from RCC cell lines to study tumor-stroma interaction in xenograft model
|
| Sample_geo_accession | GSM736456
| | Sample_status | Public on May 30 2012
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | May 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MouseGenome 430 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736456/suppl/GSM736456.CEL.gz
| | Sample_series_id | GSE29688
| | Sample_data_row_count | 45101
| | |
|
GSM736457 | GPL1261 |
|
Mouse_NormalLung_biorep3
|
Mouse_NormalLung
|
RCC cell line type: none
tissue: normal mouse lung (reference)
|
Expression data from RCC cell lines to study tumor-stroma interaction in xenograft model
|
| Sample_geo_accession | GSM736457
| | Sample_status | Public on May 30 2012
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | May 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MouseGenome 430 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736457/suppl/GSM736457.CEL.gz
| | Sample_series_id | GSE29688
| | Sample_data_row_count | 45101
| | |
|
GSM736458 | GPL1261 |
|
Mouse_NormalLung_biorep4
|
Mouse_NormalLung
|
RCC cell line type: none
tissue: normal mouse lung (reference)
|
Expression data from RCC cell lines to study tumor-stroma interaction in xenograft model
|
| Sample_geo_accession | GSM736458
| | Sample_status | Public on May 30 2012
| | Sample_submission_date | Jun 02 2011
| | Sample_last_update_date | May 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MouseGenome 430 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM736nnn/GSM736458/suppl/GSM736458.CEL.gz
| | Sample_series_id | GSE29688
| | Sample_data_row_count | 45101
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