Search results for the GEO ID: GSE29721  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM737065 | GPL570 |
|
10_cancer
|
HCC tissue
|
tissue: microdissected hepatic cellular carcinoma (HCC)
portal vein infiltration: non-infiltration
patient: 10
|
Gene expression data from cancerous hepatocytes.
|
| Sample_geo_accession | GSM737065
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737065/suppl/GSM737065.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737066 | GPL570 |
|
10_normal
|
Normal liver tissue
|
tissue: microdissected normal liver
portal vein infiltration: normal tissue
patient: 10
|
Gene expression data from normal hepatocytes.
|
| Sample_geo_accession | GSM737066
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737066/suppl/GSM737066.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737067 | GPL570 |
|
11_cancer
|
HCC tissue
|
tissue: microdissected hepatic cellular carcinoma (HCC)
portal vein infiltration: non-infiltration
patient: 11
|
Gene expression data from cancerous hepatocytes.
|
| Sample_geo_accession | GSM737067
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737067/suppl/GSM737067.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737068 | GPL570 |
|
11_normal
|
Normal liver tissue
|
tissue: microdissected normal liver
portal vein infiltration: normal tissue
patient: 11
|
Gene expression data from normal hepatocytes.
|
| Sample_geo_accession | GSM737068
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737068/suppl/GSM737068.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737069 | GPL570 |
|
12_cancer
|
HCC tissue
|
tissue: microdissected hepatic cellular carcinoma (HCC)
portal vein infiltration: non-infiltration
patient: 12
|
Gene expression data from cancerous hepatocytes.
|
| Sample_geo_accession | GSM737069
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737069/suppl/GSM737069.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737070 | GPL570 |
|
12_normal
|
Normal liver tissue
|
tissue: microdissected normal liver
portal vein infiltration: normal tissue
patient: 12
|
Gene expression data from normal hepatocytes.
|
| Sample_geo_accession | GSM737070
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737070/suppl/GSM737070.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737071 | GPL570 |
|
14_cancer
|
HCC tissue
|
tissue: microdissected hepatic cellular carcinoma (HCC)
portal vein infiltration: non-infiltration
patient: 14
|
Gene expression data from cancerous hepatocytes.
|
| Sample_geo_accession | GSM737071
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737071/suppl/GSM737071.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737072 | GPL570 |
|
14_normal
|
Normal liver tissue
|
tissue: microdissected normal liver
portal vein infiltration: normal tissue
patient: 14
|
Gene expression data from normal hepatocytes.
|
| Sample_geo_accession | GSM737072
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737072/suppl/GSM737072.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737073 | GPL570 |
|
15_cancer
|
HCC tissue
|
tissue: microdissected hepatic cellular carcinoma (HCC)
portal vein infiltration: non-infiltration
patient: 15
|
Gene expression data from cancerous hepatocytes.
|
| Sample_geo_accession | GSM737073
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737073/suppl/GSM737073.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737074 | GPL570 |
|
15_normal
|
Normal liver tissue
|
tissue: microdissected normal liver
portal vein infiltration: normal tissue
patient: 15
|
Gene expression data from normal hepatocytes.
|
| Sample_geo_accession | GSM737074
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737074/suppl/GSM737074.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737075 | GPL570 |
|
1_cancer
|
HCC tissue
|
tissue: microdissected hepatic cellular carcinoma (HCC)
portal vein infiltration: portal vein infiltration
patient: 1
|
Gene expression data from cancerous hepatocytes.
|
| Sample_geo_accession | GSM737075
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737075/suppl/GSM737075.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737076 | GPL570 |
|
1_normal
|
Normal liver tissue
|
tissue: microdissected normal liver
portal vein infiltration: normal tissue
patient: 1
|
Gene expression data from normal hepatocytes.
|
| Sample_geo_accession | GSM737076
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737076/suppl/GSM737076.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737077 | GPL570 |
|
4_cancer
|
HCC tissue
|
tissue: microdissected hepatic cellular carcinoma (HCC)
portal vein infiltration: portal vein infiltration
patient: 4
|
Gene expression data from cancerous hepatocytes.
|
| Sample_geo_accession | GSM737077
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737077/suppl/GSM737077.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737078 | GPL570 |
|
4_normal
|
Normal liver tissue
|
tissue: microdissected normal liver
portal vein infiltration: normal tissue
patient: 4
|
Gene expression data from normal hepatocytes.
|
| Sample_geo_accession | GSM737078
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737078/suppl/GSM737078.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737079 | GPL570 |
|
5_cancer
|
HCC tissue
|
tissue: microdissected hepatic cellular carcinoma (HCC)
portal vein infiltration: portal vein infiltration
patient: 5
|
Gene expression data from cancerous hepatocytes.
|
| Sample_geo_accession | GSM737079
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737079/suppl/GSM737079.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737080 | GPL570 |
|
5_normal
|
Normal liver tissue
|
tissue: microdissected normal liver
portal vein infiltration: normal tissue
patient: 5
|
Gene expression data from normal hepatocytes.
|
| Sample_geo_accession | GSM737080
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737080/suppl/GSM737080.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737081 | GPL570 |
|
8_cancer
|
HCC tissue
|
tissue: microdissected hepatic cellular carcinoma (HCC)
portal vein infiltration: non-infiltration
patient: 8
|
Gene expression data from cancerous hepatocytes.
|
| Sample_geo_accession | GSM737081
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737081/suppl/GSM737081.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737082 | GPL570 |
|
8_normal
|
Normal liver tissue
|
tissue: microdissected normal liver
portal vein infiltration: normal tissue
patient: 8
|
Gene expression data from normal hepatocytes.
|
| Sample_geo_accession | GSM737082
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737082/suppl/GSM737082.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737083 | GPL570 |
|
9_cancer
|
HCC tissue
|
tissue: microdissected hepatic cellular carcinoma (HCC)
portal vein infiltration: non-infiltration
patient: 9
|
Gene expression data from cancerous hepatocytes.
|
| Sample_geo_accession | GSM737083
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737083/suppl/GSM737083.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
GSM737084 | GPL570 |
|
9_normal
|
Normal liver tissue
|
tissue: microdissected normal liver
portal vein infiltration: normal tissue
patient: 9
|
Gene expression data from normal hepatocytes.
|
| Sample_geo_accession | GSM737084
| | Sample_status | Public on Jun 04 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Jun 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using TRIzol (Invitrogen, Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1 ug RNA served as template for cDNA synthesis using reverse transcriptase.
| | Sample_hyb_protocol | Samples were hybridized to HG-U133 Plus 2.0 high-density oligonucleotide arrays (Affymetrix). Hybridization and washing were performed according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_scan_protocol | The microarrays were scanned according to the manufacturer's instructions (One-Cycle Target Labeling Assay, Affymetrix).
| | Sample_data_processing | The data were RMA normalized using the affy package in R/BioConductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,,Suderman
| | Sample_contact_email | msuder@mcb.mcgill.ca
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | McGill University
| | Sample_contact_address | McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
| | Sample_contact_city | Montreal
| | Sample_contact_state | Quebec
| | Sample_contact_zip/postal_code | H3G 1Y6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737084/suppl/GSM737084.CEL.gz
| | Sample_series_id | GSE29721
| | Sample_series_id | GSE29722
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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