Search results for the GEO ID: GSE29732  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM737154 | GPL339 |
|
CD44 Hi T-cell lymphoma, replicate 1
|
CD44hicells purified from stable mouse Snf5-deficient T cell lymphoma cell lines
|
cell line: CD44
subpopulation: CD44hi
|
|
| Sample_geo_accession | GSM737154
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from MEF and Lymphoma samples using RNA Trizol per the manufacturer’s protocol and Qiagen RNAeasy purification. RNA was hybridized to Affymetrix Mouse 430A 2.0 arrays, and CEL files were preprocessed using Robust Multichip Average (RMA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA of interest is converted into cDNA, then amplified and labeled with biotinylated nucleotides by in vitro transcription to produce biotinylated cRNA.
| | Sample_hyb_protocol | The cRNA is hybridized to a microarray chip. The bound cRNA is stained with fluorescent streptavidin.
| | Sample_scan_protocol | The microarray chip is then scanned using a laser, and the positions and intensities of the fluorescent emissions are captured. These measurements provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | Data was analyzed using the Gene Pattern software. RMA normalization.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xi,,Wang
| | Sample_contact_email | ergito2@gmail.com
| | Sample_contact_phone | 617-632-4081
| | Sample_contact_fax | 617-582-8096
| | Sample_contact_laboratory | Charles Roberts
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | Dana Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street, M654
| | Sample_contact_city | Boston
| | Sample_contact_state | Massachusetts
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737154/suppl/GSM737154.CEL.gz
| | Sample_series_id | GSE29732
| | Sample_data_row_count | 22690
| | |
|
GSM737155 | GPL339 |
|
CD44 Hi T-cell lymphoma, replicate 2
|
CD44hicells purified from stable mouse Snf5-deficient T cell lymphoma cell lines
|
cell line: CD44
subpopulation: CD44hi
|
|
| Sample_geo_accession | GSM737155
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from MEF and Lymphoma samples using RNA Trizol per the manufacturer’s protocol and Qiagen RNAeasy purification. RNA was hybridized to Affymetrix Mouse 430A 2.0 arrays, and CEL files were preprocessed using Robust Multichip Average (RMA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA of interest is converted into cDNA, then amplified and labeled with biotinylated nucleotides by in vitro transcription to produce biotinylated cRNA.
| | Sample_hyb_protocol | The cRNA is hybridized to a microarray chip. The bound cRNA is stained with fluorescent streptavidin.
| | Sample_scan_protocol | The microarray chip is then scanned using a laser, and the positions and intensities of the fluorescent emissions are captured. These measurements provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | Data was analyzed using the Gene Pattern software. RMA normalization.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xi,,Wang
| | Sample_contact_email | ergito2@gmail.com
| | Sample_contact_phone | 617-632-4081
| | Sample_contact_fax | 617-582-8096
| | Sample_contact_laboratory | Charles Roberts
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | Dana Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street, M654
| | Sample_contact_city | Boston
| | Sample_contact_state | Massachusetts
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737155/suppl/GSM737155.CEL.gz
| | Sample_series_id | GSE29732
| | Sample_data_row_count | 22690
| | |
|
GSM737156 | GPL339 |
|
CD44 Hi T-cell lymphoma, replicate 3
|
CD44hicells purified from stable mouse Snf5-deficient T cell lymphoma cell lines
|
cell line: CD44
subpopulation: CD44hi
|
|
| Sample_geo_accession | GSM737156
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from MEF and Lymphoma samples using RNA Trizol per the manufacturer’s protocol and Qiagen RNAeasy purification. RNA was hybridized to Affymetrix Mouse 430A 2.0 arrays, and CEL files were preprocessed using Robust Multichip Average (RMA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA of interest is converted into cDNA, then amplified and labeled with biotinylated nucleotides by in vitro transcription to produce biotinylated cRNA.
| | Sample_hyb_protocol | The cRNA is hybridized to a microarray chip. The bound cRNA is stained with fluorescent streptavidin.
| | Sample_scan_protocol | The microarray chip is then scanned using a laser, and the positions and intensities of the fluorescent emissions are captured. These measurements provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | Data was analyzed using the Gene Pattern software. RMA normalization.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xi,,Wang
| | Sample_contact_email | ergito2@gmail.com
| | Sample_contact_phone | 617-632-4081
| | Sample_contact_fax | 617-582-8096
| | Sample_contact_laboratory | Charles Roberts
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | Dana Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street, M654
| | Sample_contact_city | Boston
| | Sample_contact_state | Massachusetts
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737156/suppl/GSM737156.CEL.gz
| | Sample_series_id | GSE29732
| | Sample_data_row_count | 22690
| | |
|
GSM737157 | GPL339 |
|
CD44 Hi T-cell lymphoma, replicate 4
|
CD44hicells purified from stable mouse Snf5-deficient T cell lymphoma cell lines
|
cell line: CD44
subpopulation: CD44hi
|
|
| Sample_geo_accession | GSM737157
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from MEF and Lymphoma samples using RNA Trizol per the manufacturer’s protocol and Qiagen RNAeasy purification. RNA was hybridized to Affymetrix Mouse 430A 2.0 arrays, and CEL files were preprocessed using Robust Multichip Average (RMA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA of interest is converted into cDNA, then amplified and labeled with biotinylated nucleotides by in vitro transcription to produce biotinylated cRNA.
| | Sample_hyb_protocol | The cRNA is hybridized to a microarray chip. The bound cRNA is stained with fluorescent streptavidin.
| | Sample_scan_protocol | The microarray chip is then scanned using a laser, and the positions and intensities of the fluorescent emissions are captured. These measurements provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | Data was analyzed using the Gene Pattern software. RMA normalization.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xi,,Wang
| | Sample_contact_email | ergito2@gmail.com
| | Sample_contact_phone | 617-632-4081
| | Sample_contact_fax | 617-582-8096
| | Sample_contact_laboratory | Charles Roberts
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | Dana Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street, M654
| | Sample_contact_city | Boston
| | Sample_contact_state | Massachusetts
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737157/suppl/GSM737157.CEL.gz
| | Sample_series_id | GSE29732
| | Sample_data_row_count | 22690
| | |
|
GSM737158 | GPL339 |
|
CD44 Low T-cell lymphoma, replicate 1
|
CD44lo cells purified from stable mouse Snf5-deficient T cell lymphoma cell lines
|
cell line: CD44
subpopulation: CD44low
|
|
| Sample_geo_accession | GSM737158
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from MEF and Lymphoma samples using RNA Trizol per the manufacturer’s protocol and Qiagen RNAeasy purification. RNA was hybridized to Affymetrix Mouse 430A 2.0 arrays, and CEL files were preprocessed using Robust Multichip Average (RMA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA of interest is converted into cDNA, then amplified and labeled with biotinylated nucleotides by in vitro transcription to produce biotinylated cRNA.
| | Sample_hyb_protocol | The cRNA is hybridized to a microarray chip. The bound cRNA is stained with fluorescent streptavidin.
| | Sample_scan_protocol | The microarray chip is then scanned using a laser, and the positions and intensities of the fluorescent emissions are captured. These measurements provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | Data was analyzed using the Gene Pattern software. RMA normalization.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xi,,Wang
| | Sample_contact_email | ergito2@gmail.com
| | Sample_contact_phone | 617-632-4081
| | Sample_contact_fax | 617-582-8096
| | Sample_contact_laboratory | Charles Roberts
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | Dana Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street, M654
| | Sample_contact_city | Boston
| | Sample_contact_state | Massachusetts
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737158/suppl/GSM737158.CEL.gz
| | Sample_series_id | GSE29732
| | Sample_data_row_count | 22690
| | |
|
GSM737159 | GPL339 |
|
CD44 Low T-cell lymphoma, replicate 2
|
CD44lo cells purified from stable mouse Snf5-deficient T cell lymphoma cell lines
|
cell line: CD44
subpopulation: CD44low
|
|
| Sample_geo_accession | GSM737159
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from MEF and Lymphoma samples using RNA Trizol per the manufacturer’s protocol and Qiagen RNAeasy purification. RNA was hybridized to Affymetrix Mouse 430A 2.0 arrays, and CEL files were preprocessed using Robust Multichip Average (RMA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA of interest is converted into cDNA, then amplified and labeled with biotinylated nucleotides by in vitro transcription to produce biotinylated cRNA.
| | Sample_hyb_protocol | The cRNA is hybridized to a microarray chip. The bound cRNA is stained with fluorescent streptavidin.
| | Sample_scan_protocol | The microarray chip is then scanned using a laser, and the positions and intensities of the fluorescent emissions are captured. These measurements provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | Data was analyzed using the Gene Pattern software. RMA normalization.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xi,,Wang
| | Sample_contact_email | ergito2@gmail.com
| | Sample_contact_phone | 617-632-4081
| | Sample_contact_fax | 617-582-8096
| | Sample_contact_laboratory | Charles Roberts
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | Dana Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street, M654
| | Sample_contact_city | Boston
| | Sample_contact_state | Massachusetts
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737159/suppl/GSM737159.CEL.gz
| | Sample_series_id | GSE29732
| | Sample_data_row_count | 22690
| | |
|
GSM737160 | GPL339 |
|
CD44 Low T-cell lymphoma, replicate 3
|
CD44lo cells purified from stable mouse Snf5-deficient T cell lymphoma cell lines
|
cell line: CD44
subpopulation: CD44low
|
|
| Sample_geo_accession | GSM737160
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from MEF and Lymphoma samples using RNA Trizol per the manufacturer’s protocol and Qiagen RNAeasy purification. RNA was hybridized to Affymetrix Mouse 430A 2.0 arrays, and CEL files were preprocessed using Robust Multichip Average (RMA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA of interest is converted into cDNA, then amplified and labeled with biotinylated nucleotides by in vitro transcription to produce biotinylated cRNA.
| | Sample_hyb_protocol | The cRNA is hybridized to a microarray chip. The bound cRNA is stained with fluorescent streptavidin.
| | Sample_scan_protocol | The microarray chip is then scanned using a laser, and the positions and intensities of the fluorescent emissions are captured. These measurements provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | Data was analyzed using the Gene Pattern software. RMA normalization.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xi,,Wang
| | Sample_contact_email | ergito2@gmail.com
| | Sample_contact_phone | 617-632-4081
| | Sample_contact_fax | 617-582-8096
| | Sample_contact_laboratory | Charles Roberts
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | Dana Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street, M654
| | Sample_contact_city | Boston
| | Sample_contact_state | Massachusetts
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737160/suppl/GSM737160.CEL.gz
| | Sample_series_id | GSE29732
| | Sample_data_row_count | 22690
| | |
|
GSM737161 | GPL339 |
|
CD44 Low T-cell lymphoma, replicate 4
|
CD44lo cells purified from stable mouse Snf5-deficient T cell lymphoma cell lines
|
cell line: CD44
subpopulation: CD44low
|
|
| Sample_geo_accession | GSM737161
| | Sample_status | Public on Nov 01 2011
| | Sample_submission_date | Jun 03 2011
| | Sample_last_update_date | Nov 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from MEF and Lymphoma samples using RNA Trizol per the manufacturer’s protocol and Qiagen RNAeasy purification. RNA was hybridized to Affymetrix Mouse 430A 2.0 arrays, and CEL files were preprocessed using Robust Multichip Average (RMA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA of interest is converted into cDNA, then amplified and labeled with biotinylated nucleotides by in vitro transcription to produce biotinylated cRNA.
| | Sample_hyb_protocol | The cRNA is hybridized to a microarray chip. The bound cRNA is stained with fluorescent streptavidin.
| | Sample_scan_protocol | The microarray chip is then scanned using a laser, and the positions and intensities of the fluorescent emissions are captured. These measurements provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | Data was analyzed using the Gene Pattern software. RMA normalization.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xi,,Wang
| | Sample_contact_email | ergito2@gmail.com
| | Sample_contact_phone | 617-632-4081
| | Sample_contact_fax | 617-582-8096
| | Sample_contact_laboratory | Charles Roberts
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | Dana Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street, M654
| | Sample_contact_city | Boston
| | Sample_contact_state | Massachusetts
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM737nnn/GSM737161/suppl/GSM737161.CEL.gz
| | Sample_series_id | GSE29732
| | Sample_data_row_count | 22690
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