Search results for the GEO ID: GSE29832  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM739214 | GPL570 |
|
Blood, biological rep1
|
Pure blood sample
|
tissue: blood
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739214
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739214/suppl/GSM739214.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
| | |
|
GSM739215 | GPL570 |
|
Blood, biological rep2
|
Pure blood sample
|
tissue: blood
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739215
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739215/suppl/GSM739215.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
| | |
|
GSM739216 | GPL570 |
|
Blood, biological rep3
|
Pure blood sample
|
tissue: blood
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739216
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739216/suppl/GSM739216.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
| | |
|
GSM739217 | GPL570 |
|
Mixture (67:33), biological rep1
|
Mixed sample, percent.blood:percent.breast: 67%:33%
|
tissue: 67% blood and 33% breast
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739217
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739217/suppl/GSM739217.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
| | |
|
GSM739218 | GPL570 |
|
Mixture (67:33), biological rep2
|
Mixed sample, percent.blood:percent.breast: 67%:33%
|
tissue: 67% blood and 33% breast
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739218
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739218/suppl/GSM739218.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
| | |
|
GSM739219 | GPL570 |
|
Mixture (67:33), biological rep3
|
Mixed sample, percent.blood:percent.breast: 67%:33%
|
tissue: 67% blood and 33% breast
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739219
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739219/suppl/GSM739219.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
| | |
|
GSM739220 | GPL570 |
|
Mixture (33:67), biological rep1
|
Mixed sample, percent.blood:percent.breast: 33%:67%
|
tissue: 33% blood and 67% breast
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739220
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739220/suppl/GSM739220.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
| | |
|
GSM739221 | GPL570 |
|
Mixture (33:67), biological rep2
|
Mixed sample, percent.blood:percent.breast: 33%:67%
|
tissue: 33% blood and 67% breast
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739221
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739221/suppl/GSM739221.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
| | |
|
GSM739222 | GPL570 |
|
Mixture (33:67), biological rep3
|
Mixed sample, percent.blood:percent.breast: 33%:67%
|
tissue: 33% blood and 67% breast
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739222
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739222/suppl/GSM739222.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
| | |
|
GSM739223 | GPL570 |
|
Breast, biological rep1
|
Pure breast sample
|
tissue: breast
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739223
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739223/suppl/GSM739223.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
| | |
|
GSM739224 | GPL570 |
|
Breast, biological rep2
|
Pure breast sample
|
tissue: breast
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739224
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739224/suppl/GSM739224.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
| | |
|
GSM739225 | GPL570 |
|
Breast, biological rep3
|
Pure breast sample
|
tissue: breast
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739225
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739225/suppl/GSM739225.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
| | |
|
GSM739226 | GPL570 |
|
Mixture (33:67), biological rep4
|
Mixed sample, percent.blood:percent.breast: 33%:67%
|
tissue: 33% blood and 67% breast
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739226
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739226/suppl/GSM739226.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
| | |
|
GSM739227 | GPL570 |
|
Mixture (33:67), biological rep5
|
Mixed sample, percent.blood:percent.breast: 33%:67%
|
tissue: 33% blood and 67% breast
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739227
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739227/suppl/GSM739227.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
| | |
|
GSM739228 | GPL570 |
|
Mixture (33:67), biological rep6
|
Mixed sample, percent.blood:percent.breast: 33%:67%
|
tissue: 33% blood and 67% breast
gender: female
developmental stage: adult
|
Exploratory expression profiling.
|
| Sample_geo_accession | GSM739228
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | Jun 08 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip HG-U133_Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Robust Multiarray Average (RMA) normalization and scaled to a 2% trimmed mean of 150 using R/Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ting,,Gong
| | Sample_contact_institute | Novartis Institutes for Biomedical research
| | Sample_contact_address | 45 Sidney street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM739nnn/GSM739228/suppl/GSM739228.cel.gz
| | Sample_series_id | GSE29832
| | Sample_data_row_count | 54675
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