Search results for the GEO ID: GSE29884  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM740092 | GPL570 |
|
Sample # 1
|
MCF7 cell line
|
genotype/variation: First generation
|
Sal004_HG-U133_Plus_2.cel
|
| Sample_geo_accession | GSM740092
| | Sample_status | Public on Oct 15 2011
| | Sample_submission_date | Jun 10 2011
| | Sample_last_update_date | Oct 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cultured cells with or without retrovirus carrying a constitutivly active RAF1 full length cDNA and xenografts from nude mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| | Sample_contact_email | leontovich.alexey@mayo.edu
| | Sample_contact_phone | 507-284-4850
| | Sample_contact_fax | 507-538-0850
| | Sample_contact_laboratory | Biomedical Statistics and Informatics
| | Sample_contact_department | Health Science Research
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First street
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55902
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM740nnn/GSM740092/suppl/GSM740092.cel.gz
| | Sample_series_id | GSE29884
| | Sample_data_row_count | 54675
| | |
|
GSM740093 | GPL570 |
|
Sample # 2
|
MCF7 cell line
|
genotype/variation: First generation
|
Sal005_HG-U133_Plus_2.cel
|
| Sample_geo_accession | GSM740093
| | Sample_status | Public on Oct 15 2011
| | Sample_submission_date | Jun 10 2011
| | Sample_last_update_date | Oct 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cultured cells with or without retrovirus carrying a constitutivly active RAF1 full length cDNA and xenografts from nude mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| | Sample_contact_email | leontovich.alexey@mayo.edu
| | Sample_contact_phone | 507-284-4850
| | Sample_contact_fax | 507-538-0850
| | Sample_contact_laboratory | Biomedical Statistics and Informatics
| | Sample_contact_department | Health Science Research
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First street
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55902
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM740nnn/GSM740093/suppl/GSM740093.cel.gz
| | Sample_series_id | GSE29884
| | Sample_data_row_count | 54675
| | |
|
GSM740094 | GPL570 |
|
Sample # 3
|
MCF7 cell line
|
genotype/variation: Wild type
|
Sal006_HG-U133_Plus_2.cel
|
| Sample_geo_accession | GSM740094
| | Sample_status | Public on Oct 15 2011
| | Sample_submission_date | Jun 10 2011
| | Sample_last_update_date | Oct 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cultured cells with or without retrovirus carrying a constitutivly active RAF1 full length cDNA and xenografts from nude mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| | Sample_contact_email | leontovich.alexey@mayo.edu
| | Sample_contact_phone | 507-284-4850
| | Sample_contact_fax | 507-538-0850
| | Sample_contact_laboratory | Biomedical Statistics and Informatics
| | Sample_contact_department | Health Science Research
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First street
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55902
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM740nnn/GSM740094/suppl/GSM740094.cel.gz
| | Sample_series_id | GSE29884
| | Sample_data_row_count | 54675
| | |
|
GSM740095 | GPL570 |
|
Sample # 4
|
MCF7 cell line
|
genotype/variation: Wild type
|
Sal007_HG-U133_Plus_2.cel
|
| Sample_geo_accession | GSM740095
| | Sample_status | Public on Oct 15 2011
| | Sample_submission_date | Jun 10 2011
| | Sample_last_update_date | Oct 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cultured cells with or without retrovirus carrying a constitutivly active RAF1 full length cDNA and xenografts from nude mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| | Sample_contact_email | leontovich.alexey@mayo.edu
| | Sample_contact_phone | 507-284-4850
| | Sample_contact_fax | 507-538-0850
| | Sample_contact_laboratory | Biomedical Statistics and Informatics
| | Sample_contact_department | Health Science Research
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First street
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55902
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM740nnn/GSM740095/suppl/GSM740095.cel.gz
| | Sample_series_id | GSE29884
| | Sample_data_row_count | 54675
| | |
|
GSM740096 | GPL570 |
|
Sample # 5
|
MCF7 cell line
|
genotype/variation: RAF1 transfected first generation
|
Sal008_HG-U133_Plus_2.cel
|
| Sample_geo_accession | GSM740096
| | Sample_status | Public on Oct 15 2011
| | Sample_submission_date | Jun 10 2011
| | Sample_last_update_date | Oct 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cultured cells with or without retrovirus carrying a constitutivly active RAF1 full length cDNA and xenografts from nude mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| | Sample_contact_email | leontovich.alexey@mayo.edu
| | Sample_contact_phone | 507-284-4850
| | Sample_contact_fax | 507-538-0850
| | Sample_contact_laboratory | Biomedical Statistics and Informatics
| | Sample_contact_department | Health Science Research
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First street
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55902
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM740nnn/GSM740096/suppl/GSM740096.cel.gz
| | Sample_series_id | GSE29884
| | Sample_data_row_count | 54675
| | |
|
GSM740097 | GPL570 |
|
Sample # 6
|
MCF7 cell line
|
genotype/variation: Lung metastases
|
Sal009_HG-U133_Plus_2.cel
|
| Sample_geo_accession | GSM740097
| | Sample_status | Public on Oct 15 2011
| | Sample_submission_date | Jun 10 2011
| | Sample_last_update_date | Oct 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cultured cells with or without retrovirus carrying a constitutivly active RAF1 full length cDNA and xenografts from nude mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| | Sample_contact_email | leontovich.alexey@mayo.edu
| | Sample_contact_phone | 507-284-4850
| | Sample_contact_fax | 507-538-0850
| | Sample_contact_laboratory | Biomedical Statistics and Informatics
| | Sample_contact_department | Health Science Research
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First street
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55902
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM740nnn/GSM740097/suppl/GSM740097.cel.gz
| | Sample_series_id | GSE29884
| | Sample_data_row_count | 54675
| | |
|
GSM740098 | GPL570 |
|
Sample # 7
|
MCF7 cell line
|
genotype/variation: Lung metastases
|
Sal010_HG-U133_Plus_2.cel
|
| Sample_geo_accession | GSM740098
| | Sample_status | Public on Oct 15 2011
| | Sample_submission_date | Jun 10 2011
| | Sample_last_update_date | Oct 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cultured cells with or without retrovirus carrying a constitutivly active RAF1 full length cDNA and xenografts from nude mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| | Sample_contact_email | leontovich.alexey@mayo.edu
| | Sample_contact_phone | 507-284-4850
| | Sample_contact_fax | 507-538-0850
| | Sample_contact_laboratory | Biomedical Statistics and Informatics
| | Sample_contact_department | Health Science Research
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First street
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55902
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM740nnn/GSM740098/suppl/GSM740098.cel.gz
| | Sample_series_id | GSE29884
| | Sample_data_row_count | 54675
| | |
|
GSM740099 | GPL570 |
|
Sample # 8
|
MCF7 cell line
|
genotype/variation: RAF1 transfected MCF7
|
Sal012_HG-U133_Plus_2.cel
|
| Sample_geo_accession | GSM740099
| | Sample_status | Public on Oct 15 2011
| | Sample_submission_date | Jun 10 2011
| | Sample_last_update_date | Oct 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cultured cells with or without retrovirus carrying a constitutivly active RAF1 full length cDNA and xenografts from nude mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| | Sample_contact_email | leontovich.alexey@mayo.edu
| | Sample_contact_phone | 507-284-4850
| | Sample_contact_fax | 507-538-0850
| | Sample_contact_laboratory | Biomedical Statistics and Informatics
| | Sample_contact_department | Health Science Research
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First street
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55902
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM740nnn/GSM740099/suppl/GSM740099.cel.gz
| | Sample_series_id | GSE29884
| | Sample_data_row_count | 54675
| | |
|
GSM740100 | GPL570 |
|
Sample # 9
|
MCF7 cell line
|
genotype/variation: RAF1 transfected MCF7
|
Sal013_HG-U133_Plus_2.cel
|
| Sample_geo_accession | GSM740100
| | Sample_status | Public on Oct 15 2011
| | Sample_submission_date | Jun 10 2011
| | Sample_last_update_date | Oct 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cultured cells with or without retrovirus carrying a constitutivly active RAF1 full length cDNA and xenografts from nude mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| | Sample_contact_email | leontovich.alexey@mayo.edu
| | Sample_contact_phone | 507-284-4850
| | Sample_contact_fax | 507-538-0850
| | Sample_contact_laboratory | Biomedical Statistics and Informatics
| | Sample_contact_department | Health Science Research
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First street
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55902
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM740nnn/GSM740100/suppl/GSM740100.cel.gz
| | Sample_series_id | GSE29884
| | Sample_data_row_count | 54675
| | |
|
GSM740101 | GPL570 |
|
Sample # 10
|
MCF7 cell line
|
genotype/variation: Visceral metastases
|
Sal014_HG-U133_Plus_2.cel
|
| Sample_geo_accession | GSM740101
| | Sample_status | Public on Oct 15 2011
| | Sample_submission_date | Jun 10 2011
| | Sample_last_update_date | Oct 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cultured cells with or without retrovirus carrying a constitutivly active RAF1 full length cDNA and xenografts from nude mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| | Sample_contact_email | leontovich.alexey@mayo.edu
| | Sample_contact_phone | 507-284-4850
| | Sample_contact_fax | 507-538-0850
| | Sample_contact_laboratory | Biomedical Statistics and Informatics
| | Sample_contact_department | Health Science Research
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First street
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55902
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM740nnn/GSM740101/suppl/GSM740101.cel.gz
| | Sample_series_id | GSE29884
| | Sample_data_row_count | 54675
| | |
|
GSM740102 | GPL570 |
|
Sample # 11
|
MCF7 cell line
|
genotype/variation: Visceral metastases
|
Sal015_HG-U133_Plus_2.cel
|
| Sample_geo_accession | GSM740102
| | Sample_status | Public on Oct 15 2011
| | Sample_submission_date | Jun 10 2011
| | Sample_last_update_date | Oct 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cultured cells with or without retrovirus carrying a constitutivly active RAF1 full length cDNA and xenografts from nude mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| | Sample_contact_email | leontovich.alexey@mayo.edu
| | Sample_contact_phone | 507-284-4850
| | Sample_contact_fax | 507-538-0850
| | Sample_contact_laboratory | Biomedical Statistics and Informatics
| | Sample_contact_department | Health Science Research
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First street
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55902
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM740nnn/GSM740102/suppl/GSM740102.cel.gz
| | Sample_series_id | GSE29884
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
