Search results for the GEO ID: GSE29959  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM741305 | GPL570 |
|
ALLSIL mock treated 12hrs
|
ALLSIL cell line
|
cell line: ALLSIL
tumor type: T-cell acute lymphoblastic leukemia
agent: DMSO
|
ALLSIL DMSO
YF060509H133P01.CEL
|
| Sample_geo_accession | GSM741305
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741305/suppl/GSM741305.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741306 | GPL570 |
|
ALLSIL GSI treated 12hrs
|
ALLSIL cell line
|
cell line: ALLSIL
tumor type: T-cell acute lymphoblastic leukemia
agent: CmpdE
|
ALLSIL CmpdE
YF060509H133P02.CEL
|
| Sample_geo_accession | GSM741306
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741306/suppl/GSM741306.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741307 | GPL570 |
|
ALLSIL Mig-ICN mock treated 12hrs
|
ALLSIL cell line
|
cell line: ALLSIL
tumor type: T-cell acute lymphoblastic leukemia
transduction: ICN
agent post-transduction: DMSO
|
ALLSIL Mig-ICN DMSO
YF060509H133P03.CEL
|
| Sample_geo_accession | GSM741307
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741307/suppl/GSM741307.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741308 | GPL570 |
|
ALLSIL Mig-ICN GSI treated 12hrs
|
ALLSIL cell line
|
cell line: ALLSIL
tumor type: T-cell acute lymphoblastic leukemia
transduction: ICN
agent post-transduction: CmpdE
|
ALLSIL Mig-ICN CmpdE
YF060509H133P04.CEL
|
| Sample_geo_accession | GSM741308
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741308/suppl/GSM741308.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741309 | GPL570 |
|
ALLSIL Mig-cMyc mock treated 12hrs
|
ALLSIL cell line
|
cell line: ALLSIL
tumor type: T-cell acute lymphoblastic leukemia
transduction: cMyc
agent post-transduction: DMSO
|
ALLSIL Mig-cMyc DMSO
YF060509H133P05.CEL
|
| Sample_geo_accession | GSM741309
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741309/suppl/GSM741309.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741310 | GPL570 |
|
ALLSIL Mig-cMyc GSI treated 12hrs
|
ALLSIL cell line
|
cell line: ALLSIL
tumor type: T-cell acute lymphoblastic leukemia
transduction: cMyc
agent post-transduction: CmpdE
|
ALLSIL Mig-cMyc CmpdE
YF060509H133P06.CEL
|
| Sample_geo_accession | GSM741310
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741310/suppl/GSM741310.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741311 | GPL570 |
|
DND41 mock treated 12hrs
|
DND41 cell line
|
cell line: DND41
tumor type: T-cell acute lymphoblastic leukemia
agent: DMSO
|
DND41 DMSO
YF060509H133P07.CEL
|
| Sample_geo_accession | GSM741311
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741311/suppl/GSM741311.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741312 | GPL570 |
|
DND41 GSI treated 12hrs
|
DND41 cell line
|
cell line: DND41
tumor type: T-cell acute lymphoblastic leukemia
agent: CmpdE
|
DND41 CmpdE
YF060509H133P08.CEL
|
| Sample_geo_accession | GSM741312
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741312/suppl/GSM741312.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741313 | GPL570 |
|
DND41 Mig-ICN mock treated 12hrs
|
DND41 cell line
|
cell line: DND41
tumor type: T-cell acute lymphoblastic leukemia
transduction: ICN
agent post-transduction: DMSO
|
DND41 Mig-ICN DMSO
YF060509H133P09.CEL
|
| Sample_geo_accession | GSM741313
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741313/suppl/GSM741313.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741314 | GPL570 |
|
DND41 Mig-ICN GSI treated 12hrs
|
DND41 cell line
|
cell line: DND41
tumor type: T-cell acute lymphoblastic leukemia
transduction: ICN
agent post-transduction: CmpdE
|
DND41 Mig-ICN CmpdE
YF060509H133P10.CEL
|
| Sample_geo_accession | GSM741314
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741314/suppl/GSM741314.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741315 | GPL570 |
|
DND41 Mig-cMyc mock treated 12hrs
|
DND41 cell line
|
cell line: DND41
tumor type: T-cell acute lymphoblastic leukemia
transduction: cMyc
agent post-transduction: DMSO
|
DND41 Mig-cMyc DMSO
YF060509H133P11.CEL
|
| Sample_geo_accession | GSM741315
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741315/suppl/GSM741315.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741316 | GPL570 |
|
DND41 Mig-cMyc GSI treated 12hrs
|
DND41 cell line
|
cell line: DND41
tumor type: T-cell acute lymphoblastic leukemia
transduction: cMyc
agent post-transduction: CmpdE
|
DND41 Mig-cMyc CmpdE
YF060509H133P12.CEL
|
| Sample_geo_accession | GSM741316
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741316/suppl/GSM741316.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741317 | GPL570 |
|
HPBALL mock treated 12hrs
|
HPBALL cell line
|
cell line: HPBALL
tumor type: T-cell acute lymphoblastic leukemia
agent: DMSO
|
HPBALL DMSO
YF060509H133P13.CEL
|
| Sample_geo_accession | GSM741317
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741317/suppl/GSM741317.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741318 | GPL570 |
|
HPBALL GSI treated 12hrs
|
HPBALL cell line
|
cell line: HPBALL
tumor type: T-cell acute lymphoblastic leukemia
agent: CmpdE
|
HPBALL CmpdE
YF060509H133P14.CEL
|
| Sample_geo_accession | GSM741318
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741318/suppl/GSM741318.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741319 | GPL570 |
|
HPBALL Mig-ICN mock treated 12hrs
|
HPBALL cell line
|
cell line: HPBALL
tumor type: T-cell acute lymphoblastic leukemia
transduction: ICN
agent post-transduction: DMSO
|
HPBALL Mig-ICN DMSO
YF060509H133P15.CEL
|
| Sample_geo_accession | GSM741319
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741319/suppl/GSM741319.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741320 | GPL570 |
|
HPBALL Mig-ICN GSI treated 12hrs
|
HPBALL cell line
|
cell line: HPBALL
tumor type: T-cell acute lymphoblastic leukemia
transduction: ICN
agent post-transduction: CmpdE
|
HPBALL Mig-ICN CmpdE
YF060509H133P16.CEL
|
| Sample_geo_accession | GSM741320
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741320/suppl/GSM741320.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741321 | GPL570 |
|
HPBALL Mig-cMyc mock treated 12hrs
|
HPBALL cell line
|
cell line: HPBALL
tumor type: T-cell acute lymphoblastic leukemia
transduction: cMyc
agent post-transduction: DMSO
|
HPBALL Mig-cMyc DMSO
YF060509H133P17.CEL
|
| Sample_geo_accession | GSM741321
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741321/suppl/GSM741321.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741322 | GPL570 |
|
HPBALL Mig-cMyc GSI treated 12hrs
|
HPBALL cell line
|
cell line: HPBALL
tumor type: T-cell acute lymphoblastic leukemia
transduction: cMyc
agent post-transduction: CmpdE
|
HPBALL Mig-cMyc CmpdE
YF060509H133P18.CEL
|
| Sample_geo_accession | GSM741322
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741322/suppl/GSM741322.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741323 | GPL570 |
|
KOPTK1 mock treated 12hrs
|
KOPTK1 cell line
|
cell line: KOPTK1
tumor type: T-cell acute lymphoblastic leukemia
agent: DMSO
|
KOPTK1 DMSO
CP060329H133P05.CEL
|
| Sample_geo_accession | GSM741323
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741323/suppl/GSM741323.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741324 | GPL570 |
|
KOPTK1 GSI treated 12hrs
|
KOPTK1 cell line
|
cell line: KOPTK1
tumor type: T-cell acute lymphoblastic leukemia
agent: CmpdE
|
KOPTK1 CmpdE
CP060329H133P06.CEL
|
| Sample_geo_accession | GSM741324
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741324/suppl/GSM741324.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741325 | GPL570 |
|
KOPTK1 Mig-ICN mock treated 12hrs
|
KOPTK1 cell line
|
cell line: KOPTK1
tumor type: T-cell acute lymphoblastic leukemia
transduction: ICN
agent post-transduction: DMSO
|
KOPTK1 Mig-ICN DMSO
CP060329H133P07.CEL
|
| Sample_geo_accession | GSM741325
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741325/suppl/GSM741325.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741326 | GPL570 |
|
KOPTK1 Mig-ICN GSI treated 12hrs
|
KOPTK1 cell line
|
cell line: KOPTK1
tumor type: T-cell acute lymphoblastic leukemia
transduction: ICN
agent post-transduction: CmpdE
|
KOPTK1 Mig-ICN CmpdE
CP060329H133P08.CEL
|
| Sample_geo_accession | GSM741326
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741326/suppl/GSM741326.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741327 | GPL570 |
|
KOPTK1 Mig-cMyc mock treated 12hrs
|
KOPTK1 cell line
|
cell line: KOPTK1
tumor type: T-cell acute lymphoblastic leukemia
transduction: cMyc
agent post-transduction: DMSO
|
KOPTK1 Mig-cMyc DMSO
CP060329H133P09.CEL
|
| Sample_geo_accession | GSM741327
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741327/suppl/GSM741327.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741328 | GPL570 |
|
KOPTK1 Mig-cMyc GSI treated 12hrs
|
KOPTK1 cell line
|
cell line: KOPTK1
tumor type: T-cell acute lymphoblastic leukemia
transduction: cMyc
agent post-transduction: CmpdE
|
KOPTK1 Mig-cMyc CmpdE
CP060329H133P10.CEL
|
| Sample_geo_accession | GSM741328
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741328/suppl/GSM741328.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741329 | GPL570 |
|
TALL-1 mock treated 12hrs
|
TALL-1 cell line
|
cell line: TALL-1
tumor type: T-cell acute lymphoblastic leukemia
agent: DMSO
|
TALL-1 DMSO
YF060509H133P19.CEL
|
| Sample_geo_accession | GSM741329
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741329/suppl/GSM741329.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741330 | GPL570 |
|
TALL-1 GSI treated 12hrs
|
TALL-1 cell line
|
cell line: TALL-1
tumor type: T-cell acute lymphoblastic leukemia
agent: CmpdE
|
TALL-1 CmpdE
YF060509H133P20.CEL
|
| Sample_geo_accession | GSM741330
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741330/suppl/GSM741330.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741331 | GPL570 |
|
TALL-1 Mig-ICN mock treated 12hrs
|
TALL-1 cell line
|
cell line: TALL-1
tumor type: T-cell acute lymphoblastic leukemia
transduction: ICN
agent post-transduction: DMSO
|
TALL-1 Mig-ICN DMSO
YF060509H133P21.CEL
|
| Sample_geo_accession | GSM741331
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741331/suppl/GSM741331.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741332 | GPL570 |
|
TALL-1 Mig-ICN GSI treated 12hrs
|
TALL-1 cell line
|
cell line: TALL-1
tumor type: T-cell acute lymphoblastic leukemia
transduction: ICN
agent post-transduction: CmpdE
|
TALL-1 Mig-ICN CmpdE
YF060509H133P22.CEL
|
| Sample_geo_accession | GSM741332
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741332/suppl/GSM741332.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
| | |
|
GSM741333 | GPL570 |
|
TALL-1 Mig-cMyc mock treated 12hrs
|
TALL-1 cell line
|
cell line: TALL-1
tumor type: T-cell acute lymphoblastic leukemia
transduction: cMyc
agent post-transduction: DMSO
|
TALL-1 Mig-cMyc DMSO
YF060509H133P23.CEL
|
| Sample_geo_accession | GSM741333
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741333/suppl/GSM741333.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
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GSM741334 | GPL570 |
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TALL-1 Mig-cMyc GSI treated 12hrs
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TALL-1 cell line
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cell line: TALL-1
tumor type: T-cell acute lymphoblastic leukemia
transduction: cMyc
agent post-transduction: CmpdE
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TALL-1 Mig-cMyc CmpdE
YF060509H133P24.CEL
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| Sample_geo_accession | GSM741334
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Jun 14 2011
| | Sample_last_update_date | Aug 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mock-treated cultures included DMSO vehicle at 0.01% final concentration for 12 hours. Gamma-secretase inhibitor (GSI)-treated cultures included compound E (CmpdE; (S,S)- 2-[2-(3,5-Difluorophenyl)-acetylamino]-N-(1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-benzo[e][1,4]diazepin-3-yl)-propionamide) (Calbiochem) at 1.0uM final concentration for 12 hours.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum, sodium pyruvate, pen/strep, and L-glutamine in a humidified 5% CO2 atmosphere at 37C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Ten micrograms of total RNA was used to generate biotin labeled cRNA according to standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | dChip software was used to perform interarray brightness normalization by the invariant set method followed by calculation of PM/MM difference model-based expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew,P,Weng
| | Sample_contact_email | aweng@bccrc.ca
| | Sample_contact_phone | 604-675-8136
| | Sample_contact_fax | 604-877-0712
| | Sample_contact_laboratory | Terry Fox Laboratory
| | Sample_contact_department | Pathology
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 West 10th Ave
| | Sample_contact_city | Vancouver
| | Sample_contact_state | BC
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM741nnn/GSM741334/suppl/GSM741334.CEL.gz
| | Sample_series_id | GSE29959
| | Sample_data_row_count | 54675
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