Search results for the GEO ID: GSE29986  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM742112 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_01]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_01
|
| Sample_geo_accession | GSM742112
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742112/suppl/GSM742112.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742113 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_02]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_02
|
| Sample_geo_accession | GSM742113
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742113/suppl/GSM742113.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742114 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_03]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_03
|
| Sample_geo_accession | GSM742114
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742114/suppl/GSM742114.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742115 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_04]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_04
|
| Sample_geo_accession | GSM742115
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742115/suppl/GSM742115.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742116 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_05]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_05
|
| Sample_geo_accession | GSM742116
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742116/suppl/GSM742116.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742117 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_06]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_06
|
| Sample_geo_accession | GSM742117
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742117/suppl/GSM742117.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742118 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_07]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_07
|
| Sample_geo_accession | GSM742118
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742118/suppl/GSM742118.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742119 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_08]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_08
|
| Sample_geo_accession | GSM742119
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742119/suppl/GSM742119.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742120 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_09]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_09
|
| Sample_geo_accession | GSM742120
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742120/suppl/GSM742120.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742121 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_10]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_10
|
| Sample_geo_accession | GSM742121
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742121/suppl/GSM742121.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742122 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_11]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_11
|
| Sample_geo_accession | GSM742122
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742122/suppl/GSM742122.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742123 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_12]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_12
|
| Sample_geo_accession | GSM742123
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742123/suppl/GSM742123.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742124 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_13]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_13
|
| Sample_geo_accession | GSM742124
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742124/suppl/GSM742124.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742125 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_14]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_14
|
| Sample_geo_accession | GSM742125
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742125/suppl/GSM742125.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742126 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_15]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_15
|
| Sample_geo_accession | GSM742126
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742126/suppl/GSM742126.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742127 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_16]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_16
|
| Sample_geo_accession | GSM742127
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742127/suppl/GSM742127.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742128 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_17]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_17
|
| Sample_geo_accession | GSM742128
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742128/suppl/GSM742128.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742129 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_18]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_18
|
| Sample_geo_accession | GSM742129
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742129/suppl/GSM742129.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742130 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_19]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_19
|
| Sample_geo_accession | GSM742130
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742130/suppl/GSM742130.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742131 | GPL570 |
|
T lymphoblastic tumor biopsy_diagnosis [TLL_21]
|
lymphoblastic tumor biopsy_diagnosis
|
tissue: nodal tumor
diagnosis: lymphoblastic tumor biopsy
|
TLL_21
|
| Sample_geo_accession | GSM742131
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742131/suppl/GSM742131.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742132 | GPL570 |
|
T-cell acute lymphoblastic leukemia [TALL_01]
|
T-cell acute lymphoblastic leukemia bone marrow_diagnosis
|
tissue: bone marrow
diagnosis: T-cell acute lymphoblastic leukemia bone marrow
|
TALL_01
|
| Sample_geo_accession | GSM742132
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742132/suppl/GSM742132.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742133 | GPL570 |
|
T-cell acute lymphoblastic leukemia [TALL_02]
|
T-cell acute lymphoblastic leukemia bone marrow_diagnosis
|
tissue: bone marrow
diagnosis: T-cell acute lymphoblastic leukemia bone marrow
|
TALL_02
|
| Sample_geo_accession | GSM742133
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742133/suppl/GSM742133.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742134 | GPL570 |
|
T-cell acute lymphoblastic leukemia [TALL_03]
|
T-cell acute lymphoblastic leukemia bone marrow_diagnosis
|
tissue: bone marrow
diagnosis: T-cell acute lymphoblastic leukemia bone marrow
|
TALL_03
|
| Sample_geo_accession | GSM742134
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742134/suppl/GSM742134.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742135 | GPL570 |
|
T-cell acute lymphoblastic leukemia [TALL_04]
|
T-cell acute lymphoblastic leukemia bone marrow_diagnosis
|
tissue: bone marrow
diagnosis: T-cell acute lymphoblastic leukemia bone marrow
|
TALL_04
|
| Sample_geo_accession | GSM742135
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742135/suppl/GSM742135.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742136 | GPL570 |
|
T-cell acute lymphoblastic leukemia [TALL_05]
|
T-cell acute lymphoblastic leukemia bone marrow_diagnosis
|
tissue: bone marrow
diagnosis: T-cell acute lymphoblastic leukemia bone marrow
|
TALL_05
|
| Sample_geo_accession | GSM742136
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742136/suppl/GSM742136.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742137 | GPL570 |
|
T-cell acute lymphoblastic leukemia [TALL_06]
|
T-cell acute lymphoblastic leukemia bone marrow_diagnosis
|
tissue: bone marrow
diagnosis: T-cell acute lymphoblastic leukemia bone marrow
|
TALL_06
|
| Sample_geo_accession | GSM742137
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742137/suppl/GSM742137.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742138 | GPL570 |
|
T-cell acute lymphoblastic leukemia [TALL_07]
|
T-cell acute lymphoblastic leukemia bone marrow_diagnosis
|
tissue: bone marrow
diagnosis: T-cell acute lymphoblastic leukemia bone marrow
|
TALL_07
|
| Sample_geo_accession | GSM742138
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742138/suppl/GSM742138.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742139 | GPL570 |
|
T-cell acute lymphoblastic leukemia [TALL_08]
|
T-cell acute lymphoblastic leukemia bone marrow_diagnosis
|
tissue: bone marrow
diagnosis: T-cell acute lymphoblastic leukemia bone marrow
|
TALL_08
|
| Sample_geo_accession | GSM742139
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742139/suppl/GSM742139.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742140 | GPL570 |
|
T-cell acute lymphoblastic leukemia [TALL_09]
|
T-cell acute lymphoblastic leukemia bone marrow_diagnosis
|
tissue: bone marrow
diagnosis: T-cell acute lymphoblastic leukemia bone marrow
|
TALL_09
|
| Sample_geo_accession | GSM742140
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742140/suppl/GSM742140.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742141 | GPL570 |
|
T-cell acute lymphoblastic leukemia [TALL_10]
|
T-cell acute lymphoblastic leukemia bone marrow_diagnosis
|
tissue: bone marrow
diagnosis: T-cell acute lymphoblastic leukemia bone marrow
|
TALL_10
|
| Sample_geo_accession | GSM742141
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742141/suppl/GSM742141.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742142 | GPL570 |
|
common lymphoblastic leukemia [common_01]
|
common lymphoblastic leukemia bone marrow
|
tissue: bone marrow
diagnosis: common lymphoblastic leukemia bone marrow
|
common_01
|
| Sample_geo_accession | GSM742142
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742142/suppl/GSM742142.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742143 | GPL570 |
|
common lymphoblastic leukemia [common_02]
|
common lymphoblastic leukemia bone marrow
|
tissue: bone marrow
diagnosis: common lymphoblastic leukemia bone marrow
|
common_02
|
| Sample_geo_accession | GSM742143
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742143/suppl/GSM742143.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742144 | GPL570 |
|
common lymphoblastic leukemia [common_03]
|
common lymphoblastic leukemia bone marrow
|
tissue: bone marrow
diagnosis: common lymphoblastic leukemia bone marrow
|
common_03
|
| Sample_geo_accession | GSM742144
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742144/suppl/GSM742144.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742145 | GPL570 |
|
common lymphoblastic leukemia [common_04]
|
common lymphoblastic leukemia bone marrow
|
tissue: bone marrow
diagnosis: common lymphoblastic leukemia bone marrow
|
common_04
|
| Sample_geo_accession | GSM742145
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742145/suppl/GSM742145.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742146 | GPL570 |
|
common lymphoblastic leukemia [common_05]
|
common lymphoblastic leukemia bone marrow
|
tissue: bone marrow
diagnosis: common lymphoblastic leukemia bone marrow
|
common_05
|
| Sample_geo_accession | GSM742146
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742146/suppl/GSM742146.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
| | |
|
GSM742147 | GPL570 |
|
common lymphoblastic leukemia [common_06]
|
common lymphoblastic leukemia bone marrow
|
tissue: bone marrow
diagnosis: common lymphoblastic leukemia bone marrow
|
common_06
|
| Sample_geo_accession | GSM742147
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | tumor biopsies were send to our lab in colture medium and bone marrow aspirates in Na-citrate anticoagulant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacture's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on the HG-U133 Plus2.0 GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lara,,Mussolin
| | Sample_contact_email | lara.mussolin@unipd.it
| | Sample_contact_phone | +390498215565
| | Sample_contact_fax | +300498215679
| | Sample_contact_institute | Department of Pediatrics
| | Sample_contact_address | via Giustiniani 3
| | Sample_contact_city | Padua
| | Sample_contact_zip/postal_code | 35128
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742147/suppl/GSM742147.CEL.gz
| | Sample_series_id | GSE29986
| | Sample_data_row_count | 54630
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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