Search results for the GEO ID: GSE30010  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM742668 | GPL570 |
|
Human breast biopsy s10
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742668
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742668/suppl/GSM742668.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742669 | GPL570 |
|
Human breast biopsy s18
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742669
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742669/suppl/GSM742669.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742670 | GPL570 |
|
Human breast biopsy s1
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742670
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742670/suppl/GSM742670.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742671 | GPL570 |
|
Human breast biopsy s20
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742671
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742671/suppl/GSM742671.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742672 | GPL570 |
|
Human breast biopsy s22
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742672
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742672/suppl/GSM742672.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742673 | GPL570 |
|
Human breast biopsy s26
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742673
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742673/suppl/GSM742673.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742674 | GPL570 |
|
Human breast biopsy s31
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742674
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742674/suppl/GSM742674.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742675 | GPL570 |
|
Human breast biopsy s32
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742675
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742675/suppl/GSM742675.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742676 | GPL570 |
|
Human breast biopsy s33
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742676
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742676/suppl/GSM742676.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742677 | GPL570 |
|
Human breast biopsy s35
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742677
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742677/suppl/GSM742677.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742678 | GPL570 |
|
Human breast biopsy s36
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742678
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742678/suppl/GSM742678.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742679 | GPL570 |
|
Human breast biopsy s37
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742679
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742679/suppl/GSM742679.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742680 | GPL570 |
|
Human breast biopsy s38
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742680
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742680/suppl/GSM742680.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742681 | GPL570 |
|
Human breast biopsy s42
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742681
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742681/suppl/GSM742681.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742682 | GPL570 |
|
Human breast biopsy s43
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742682
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742682/suppl/GSM742682.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742683 | GPL570 |
|
Human breast biopsy s44
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742683
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742683/suppl/GSM742683.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742684 | GPL570 |
|
Human breast biopsy s45
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742684
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742684/suppl/GSM742684.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742685 | GPL570 |
|
Human breast biopsy s46
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742685
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742685/suppl/GSM742685.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742686 | GPL570 |
|
Human breast biopsy s47
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742686
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742686/suppl/GSM742686.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742687 | GPL570 |
|
Human breast biopsy s48
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742687
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742687/suppl/GSM742687.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742688 | GPL570 |
|
Human breast biopsy s49
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742688
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742688/suppl/GSM742688.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742689 | GPL570 |
|
Human breast biopsy s50
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742689
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742689/suppl/GSM742689.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742690 | GPL570 |
|
Human breast biopsy s51
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742690
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742690/suppl/GSM742690.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742691 | GPL570 |
|
Human breast biopsy s52
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742691
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742691/suppl/GSM742691.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742692 | GPL570 |
|
Human breast biopsy s53
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742692
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742692/suppl/GSM742692.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742693 | GPL570 |
|
Human breast biopsy s54
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742693
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742693/suppl/GSM742693.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742694 | GPL570 |
|
Human breast biopsy s55
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742694
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742694/suppl/GSM742694.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742695 | GPL570 |
|
Human breast biopsy s56
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742695
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742695/suppl/GSM742695.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742696 | GPL570 |
|
Human breast biopsy s57
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742696
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742696/suppl/GSM742696.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742697 | GPL570 |
|
Human breast biopsy s59
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742697
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742697/suppl/GSM742697.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742698 | GPL570 |
|
Human breast biopsy s60
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742698
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742698/suppl/GSM742698.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742699 | GPL570 |
|
Human breast biopsy s61
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742699
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742699/suppl/GSM742699.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742700 | GPL570 |
|
Human breast biopsy s62
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742700
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742700/suppl/GSM742700.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742701 | GPL570 |
|
Human breast biopsy s63
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742701
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742701/suppl/GSM742701.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742702 | GPL570 |
|
Human breast biopsy s64
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742702
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742702/suppl/GSM742702.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742703 | GPL570 |
|
Human breast biopsy s65
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742703
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742703/suppl/GSM742703.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742704 | GPL570 |
|
Human breast biopsy s67
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742704
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742704/suppl/GSM742704.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742705 | GPL570 |
|
Human breast biopsy s68
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742705
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742705/suppl/GSM742705.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742706 | GPL570 |
|
Human breast biopsy s69
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742706
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742706/suppl/GSM742706.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742707 | GPL570 |
|
Human breast biopsy s70
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742707
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742707/suppl/GSM742707.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742708 | GPL570 |
|
Human breast biopsy s71
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742708
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742708/suppl/GSM742708.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742709 | GPL570 |
|
Human breast biopsy s72
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742709
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742709/suppl/GSM742709.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742710 | GPL570 |
|
Human breast biopsy s73
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742710
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742710/suppl/GSM742710.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742711 | GPL570 |
|
Human breast biopsy s75
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742711
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742711/suppl/GSM742711.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742712 | GPL570 |
|
Human breast biopsy s76
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742712
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742712/suppl/GSM742712.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742713 | GPL570 |
|
Human breast biopsy s78
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742713
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742713/suppl/GSM742713.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742714 | GPL570 |
|
Human breast biopsy s79
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742714
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742714/suppl/GSM742714.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742715 | GPL570 |
|
Human breast biopsy s80
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742715
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742715/suppl/GSM742715.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742716 | GPL570 |
|
Human breast biopsy s81
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742716
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742716/suppl/GSM742716.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742717 | GPL570 |
|
Human breast biopsy s82
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742717
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742717/suppl/GSM742717.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742718 | GPL570 |
|
Human breast biopsy s83
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742718
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742718/suppl/GSM742718.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742719 | GPL570 |
|
Human breast biopsy s84
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742719
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742719/suppl/GSM742719.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742720 | GPL570 |
|
Human breast biopsy s85
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742720
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742720/suppl/GSM742720.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742721 | GPL570 |
|
Human breast biopsy s86
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742721
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742721/suppl/GSM742721.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742722 | GPL570 |
|
Human breast biopsy s87
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742722
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742722/suppl/GSM742722.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742723 | GPL570 |
|
Human breast biopsy V11
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742723
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742723/suppl/GSM742723.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742724 | GPL570 |
|
Human breast biopsy V13
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742724
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742724/suppl/GSM742724.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742725 | GPL570 |
|
Human breast biopsy V15
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742725
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742725/suppl/GSM742725.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742726 | GPL570 |
|
Human breast biopsy V18
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742726
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742726/suppl/GSM742726.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742727 | GPL570 |
|
Human breast biopsy V19
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742727
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742727/suppl/GSM742727.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742728 | GPL570 |
|
Human breast biopsy V1
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742728
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742728/suppl/GSM742728.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742729 | GPL570 |
|
Human breast biopsy V20
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742729
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742729/suppl/GSM742729.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742730 | GPL570 |
|
Human breast biopsy V21
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742730
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742730/suppl/GSM742730.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742731 | GPL570 |
|
Human breast biopsy V22
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742731
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742731/suppl/GSM742731.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742732 | GPL570 |
|
Human breast biopsy V23
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742732
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742732/suppl/GSM742732.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742733 | GPL570 |
|
Human breast biopsy V25
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742733
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742733/suppl/GSM742733.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742734 | GPL570 |
|
Human breast biopsy V27
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742734
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742734/suppl/GSM742734.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742735 | GPL570 |
|
Human breast biopsy V29
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742735
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742735/suppl/GSM742735.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742736 | GPL570 |
|
Human breast biopsy V2
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742736
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742736/suppl/GSM742736.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742737 | GPL570 |
|
Human breast biopsy V30
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742737
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742737/suppl/GSM742737.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742738 | GPL570 |
|
Human breast biopsy V31
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742738
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742738/suppl/GSM742738.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742739 | GPL570 |
|
Human breast biopsy V33
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742739
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742739/suppl/GSM742739.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742740 | GPL570 |
|
Human breast biopsy V35
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742740
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742740/suppl/GSM742740.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742741 | GPL570 |
|
Human breast biopsy V36
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742741
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742741/suppl/GSM742741.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742742 | GPL570 |
|
Human breast biopsy V37
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742742
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742742/suppl/GSM742742.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742743 | GPL570 |
|
Human breast biopsy V38
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742743
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742743/suppl/GSM742743.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742744 | GPL570 |
|
Human breast biopsy V39
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742744
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742744/suppl/GSM742744.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742745 | GPL570 |
|
Human breast biopsy V3
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742745
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742745/suppl/GSM742745.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742746 | GPL570 |
|
Human breast biopsy V42
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742746
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742746/suppl/GSM742746.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742747 | GPL570 |
|
Human breast biopsy V43
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742747
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742747/suppl/GSM742747.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742748 | GPL570 |
|
Human breast biopsy V45
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742748
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742748/suppl/GSM742748.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742749 | GPL570 |
|
Human breast biopsy V46
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742749
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742749/suppl/GSM742749.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742750 | GPL570 |
|
Human breast biopsy V47
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742750
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742750/suppl/GSM742750.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742751 | GPL570 |
|
Human breast biopsy V48
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742751
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742751/suppl/GSM742751.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742752 | GPL570 |
|
Human breast biopsy V49
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742752
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742752/suppl/GSM742752.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742753 | GPL570 |
|
Human breast biopsy V51
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742753
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742753/suppl/GSM742753.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742754 | GPL570 |
|
Human breast biopsy V53
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742754
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742754/suppl/GSM742754.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742755 | GPL570 |
|
Human breast biopsy V54
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742755
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742755/suppl/GSM742755.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742756 | GPL570 |
|
Human breast biopsy V55
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742756
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742756/suppl/GSM742756.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742757 | GPL570 |
|
Human breast biopsy V56
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742757
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742757/suppl/GSM742757.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742758 | GPL570 |
|
Human breast biopsy V57
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742758
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742758/suppl/GSM742758.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742759 | GPL570 |
|
Human breast biopsy V58
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742759
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742759/suppl/GSM742759.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742760 | GPL570 |
|
Human breast biopsy V59
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742760
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742760/suppl/GSM742760.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742761 | GPL570 |
|
Human breast biopsy V5
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742761
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742761/suppl/GSM742761.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742762 | GPL570 |
|
Human breast biopsy V61
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742762
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742762/suppl/GSM742762.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742763 | GPL570 |
|
Human breast biopsy V62
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742763
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742763/suppl/GSM742763.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742764 | GPL570 |
|
Human breast biopsy V64
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742764
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742764/suppl/GSM742764.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742765 | GPL570 |
|
Human breast biopsy V65
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742765
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742765/suppl/GSM742765.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742766 | GPL570 |
|
Human breast biopsy V66
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742766
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742766/suppl/GSM742766.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742767 | GPL570 |
|
Human breast biopsy V67
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742767
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742767/suppl/GSM742767.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742768 | GPL570 |
|
Human breast biopsy V68
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742768
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742768/suppl/GSM742768.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742769 | GPL570 |
|
Human breast biopsy V69
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742769
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742769/suppl/GSM742769.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742770 | GPL570 |
|
Human breast biopsy V72
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742770
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742770/suppl/GSM742770.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742771 | GPL570 |
|
Human breast biopsy V73
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742771
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742771/suppl/GSM742771.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742772 | GPL570 |
|
Human breast biopsy V7
|
Human breast biopsy, normal
|
full time pregancy: parous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742772
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742772/suppl/GSM742772.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
|
GSM742773 | GPL570 |
|
Human breast biopsy V8
|
Human breast biopsy, normal
|
full time pregancy: nulliparous
|
Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742773
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742773/suppl/GSM742773.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
| | |
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GSM742774 | GPL570 |
|
Human breast biopsy V9
|
Human breast biopsy, normal
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full time pregancy: nulliparous
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Gene expression data from breast biopsies of healthy postmenopausal women
|
| Sample_geo_accession | GSM742774
| | Sample_status | Public on Jun 17 2011
| | Sample_submission_date | Jun 15 2011
| | Sample_last_update_date | Jun 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Breast biopsies were performed with BARD MONOPTY (C. R. BARD Inc, AZ, USA) automated core biopsy instruments (14 Gauge, 10 cm long, 22 mm penetration depth)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Allprep DNA/RNA Mini Kit was used for extraction of total RNA according to the manufacturer's instructions. Samples were treated with Dnase.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 7G.
| | Sample_data_processing | Raw data from array scans were pre-processed using the Robust Multi-chip Analysis method (RMA) implemented in the Bioconductor package affy that includes background correction, quantile normalization and summarization of expression values.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ilana,,Belitskaya-Levy
| | Sample_contact_email | beliti01@nyumc.org
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 650 First Avenue, 5th Floor
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM742nnn/GSM742774/suppl/GSM742774.CEL.gz
| | Sample_series_id | GSE30010
| | Sample_data_row_count | 54675
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