Search results for the GEO ID: GSE30083  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM744582 | GPL1261 |
|
SP1, biological rep1
|
SP1
|
strain: C57BL/6
tissue: thymus
age: 6-8 wks
cd4 single positive (sp) thymocyte subset: SP1
phenotype: Qa-2-6C10+CD69+
|
Gene expression data from SP1 thymocytes with phenotype of Qa-2-6C10+CD69+
Mouse_SP1-1
|
| Sample_geo_accession | GSM744582
| | Sample_status | Public on Feb 13 2012
| | Sample_submission_date | Jun 19 2011
| | Sample_last_update_date | Feb 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Thymi from mice with 6-8 wks of age were pooled. Cells were purified according to the sample description via FACS Arial I. Trizol was added directly to the purified cells without any further culture.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Qing,,Ge
| | Sample_contact_email | qingyjb@gmail.com
| | Sample_contact_phone | 8610-82802593
| | Sample_contact_fax | 8610-82801436
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Peking University Health Science Center
| | Sample_contact_address | 38 Xueyuan Road
| | Sample_contact_city | Beijing
| | Sample_contact_zip/postal_code | 100191
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM744nnn/GSM744582/suppl/GSM744582_080722-Mouse-07582G_SP1.CEL.gz
| | Sample_series_id | GSE30083
| | Sample_data_row_count | 45037
| | |
|
GSM744583 | GPL1261 |
|
SP2, biological rep1
|
SP2
|
strain: C57BL/6
tissue: thymus
age: 6-8 wks
cd4 single positive (sp) thymocyte subset: SP2
phenotype: Qa-2-6C10-CD69+
|
Gene expression data from SP2 thymocytes with phenotype of Qa-2-6C10-CD69+
Mouse_SP2-1
|
| Sample_geo_accession | GSM744583
| | Sample_status | Public on Feb 13 2012
| | Sample_submission_date | Jun 19 2011
| | Sample_last_update_date | Feb 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Thymi from mice with 6-8 wks of age were pooled. Cells were purified according to the sample description via FACS Arial I. Trizol was added directly to the purified cells without any further culture.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Qing,,Ge
| | Sample_contact_email | qingyjb@gmail.com
| | Sample_contact_phone | 8610-82802593
| | Sample_contact_fax | 8610-82801436
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Peking University Health Science Center
| | Sample_contact_address | 38 Xueyuan Road
| | Sample_contact_city | Beijing
| | Sample_contact_zip/postal_code | 100191
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM744nnn/GSM744583/suppl/GSM744583_080722-Mouse-07582G_SP2.CEL.gz
| | Sample_series_id | GSE30083
| | Sample_data_row_count | 45037
| | |
|
GSM744584 | GPL1261 |
|
SP3, biological rep1
|
SP3
|
strain: C57BL/6
tissue: thymus
age: 6-8 wks
cd4 single positive (sp) thymocyte subset: SP3
phenotype: Qa-2-6C10-CD69-
|
Gene expression data from SP3 thymocytes with phenotype of Qa-2-6C10-CD69-
Mouse_SP3-1
|
| Sample_geo_accession | GSM744584
| | Sample_status | Public on Feb 13 2012
| | Sample_submission_date | Jun 19 2011
| | Sample_last_update_date | Feb 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Thymi from mice with 6-8 wks of age were pooled. Cells were purified according to the sample description via FACS Arial I. Trizol was added directly to the purified cells without any further culture.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Qing,,Ge
| | Sample_contact_email | qingyjb@gmail.com
| | Sample_contact_phone | 8610-82802593
| | Sample_contact_fax | 8610-82801436
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Peking University Health Science Center
| | Sample_contact_address | 38 Xueyuan Road
| | Sample_contact_city | Beijing
| | Sample_contact_zip/postal_code | 100191
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM744nnn/GSM744584/suppl/GSM744584_080722-Mouse-07582G_SP3.CEL.gz
| | Sample_series_id | GSE30083
| | Sample_data_row_count | 45037
| | |
|
GSM744585 | GPL1261 |
|
SP4, biological rep1
|
SP4
|
strain: C57BL/6
tissue: thymus
age: 6-8 wks
cd4 single positive (sp) thymocyte subset: SP4
phenotype: Qa-2+6C10-CD69-
|
Gene expression data from SP4 thymocytes with phenotype of Qa-2+6C10-CD69-
Mouse_SP4-1
|
| Sample_geo_accession | GSM744585
| | Sample_status | Public on Feb 13 2012
| | Sample_submission_date | Jun 19 2011
| | Sample_last_update_date | Feb 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Thymi from mice with 6-8 wks of age were pooled. Cells were purified according to the sample description via FACS Arial I. Trizol was added directly to the purified cells without any further culture.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Qing,,Ge
| | Sample_contact_email | qingyjb@gmail.com
| | Sample_contact_phone | 8610-82802593
| | Sample_contact_fax | 8610-82801436
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Peking University Health Science Center
| | Sample_contact_address | 38 Xueyuan Road
| | Sample_contact_city | Beijing
| | Sample_contact_zip/postal_code | 100191
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM744nnn/GSM744585/suppl/GSM744585_080722-Mouse-07582G_SP4.CEL.gz
| | Sample_series_id | GSE30083
| | Sample_data_row_count | 45037
| | |
|
GSM744586 | GPL1261 |
|
SP1, biological rep2
|
SP1
|
strain: C57BL/6
tissue: thymus
age: 6-8 wks
cd4 single positive (sp) thymocyte subset: SP1
phenotype: Qa-2-6C10+CD69+
|
Gene expression data from SP1 thymocytes with phenotype of Qa-2-6C10+CD69+
Mouse_SP1-2
|
| Sample_geo_accession | GSM744586
| | Sample_status | Public on Feb 13 2012
| | Sample_submission_date | Jun 19 2011
| | Sample_last_update_date | Feb 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Thymi from mice with 6-8 wks of age were pooled. Cells were purified according to the sample description via FACS Arial I. Trizol was added directly to the purified cells without any further culture.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Qing,,Ge
| | Sample_contact_email | qingyjb@gmail.com
| | Sample_contact_phone | 8610-82802593
| | Sample_contact_fax | 8610-82801436
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Peking University Health Science Center
| | Sample_contact_address | 38 Xueyuan Road
| | Sample_contact_city | Beijing
| | Sample_contact_zip/postal_code | 100191
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM744nnn/GSM744586/suppl/GSM744586_080530-Mouse430_2-07582F_SP1.CEL.gz
| | Sample_series_id | GSE30083
| | Sample_data_row_count | 45037
| | |
|
GSM744587 | GPL1261 |
|
SP2, biological rep2
|
SP2
|
strain: C57BL/6
tissue: thymus
age: 6-8 wks
cd4 single positive (sp) thymocyte subset: SP2
phenotype: Qa-2-6C10-CD69+
|
Gene expression data from SP2 thymocytes with phenotype of Qa-2-6C10-CD69+
Mouse_SP2-2
|
| Sample_geo_accession | GSM744587
| | Sample_status | Public on Feb 13 2012
| | Sample_submission_date | Jun 19 2011
| | Sample_last_update_date | Feb 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Thymi from mice with 6-8 wks of age were pooled. Cells were purified according to the sample description via FACS Arial I. Trizol was added directly to the purified cells without any further culture.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Qing,,Ge
| | Sample_contact_email | qingyjb@gmail.com
| | Sample_contact_phone | 8610-82802593
| | Sample_contact_fax | 8610-82801436
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Peking University Health Science Center
| | Sample_contact_address | 38 Xueyuan Road
| | Sample_contact_city | Beijing
| | Sample_contact_zip/postal_code | 100191
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM744nnn/GSM744587/suppl/GSM744587_080530-Mouse430_2-07582B_SP2.CEL.gz
| | Sample_series_id | GSE30083
| | Sample_data_row_count | 45037
| | |
|
GSM744588 | GPL1261 |
|
SP3, biological rep2
|
SP3
|
strain: C57BL/6
tissue: thymus
age: 6-8 wks
cd4 single positive (sp) thymocyte subset: SP3
phenotype: Qa-2-6C10-CD69-
|
Gene expression data from SP3 thymocytes with phenotype of Qa-2-6C10-CD69-
Mouse_SP3-2
|
| Sample_geo_accession | GSM744588
| | Sample_status | Public on Feb 13 2012
| | Sample_submission_date | Jun 19 2011
| | Sample_last_update_date | Feb 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Thymi from mice with 6-8 wks of age were pooled. Cells were purified according to the sample description via FACS Arial I. Trizol was added directly to the purified cells without any further culture.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Qing,,Ge
| | Sample_contact_email | qingyjb@gmail.com
| | Sample_contact_phone | 8610-82802593
| | Sample_contact_fax | 8610-82801436
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Peking University Health Science Center
| | Sample_contact_address | 38 Xueyuan Road
| | Sample_contact_city | Beijing
| | Sample_contact_zip/postal_code | 100191
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM744nnn/GSM744588/suppl/GSM744588_080530-Mouse430_2-07582B_SP3.CEL.gz
| | Sample_series_id | GSE30083
| | Sample_data_row_count | 45037
| | |
|
GSM744589 | GPL1261 |
|
SP4, biological rep2
|
SP4
|
strain: C57BL/6
tissue: thymus
age: 6-8 wks
cd4 single positive (sp) thymocyte subset: SP4
phenotype: Qa-2+6C10-CD69-
|
Gene expression data from SP4 thymocytes with phenotype of Qa-2+6C10-CD69-
Mouse_SP4-2
|
| Sample_geo_accession | GSM744589
| | Sample_status | Public on Feb 13 2012
| | Sample_submission_date | Jun 19 2011
| | Sample_last_update_date | Feb 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Thymi from mice with 6-8 wks of age were pooled. Cells were purified according to the sample description via FACS Arial I. Trizol was added directly to the purified cells without any further culture.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Qing,,Ge
| | Sample_contact_email | qingyjb@gmail.com
| | Sample_contact_phone | 8610-82802593
| | Sample_contact_fax | 8610-82801436
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Peking University Health Science Center
| | Sample_contact_address | 38 Xueyuan Road
| | Sample_contact_city | Beijing
| | Sample_contact_zip/postal_code | 100191
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM744nnn/GSM744589/suppl/GSM744589_080530-Mouse430_2-07582B_SP4.CEL.gz
| | Sample_series_id | GSE30083
| | Sample_data_row_count | 45037
| | |
|
GSM744590 | GPL1261 |
|
SP1, biological rep3
|
SP1
|
strain: C57BL/6
tissue: thymus
age: 6-8 wks
cd4 single positive (sp) thymocyte subset: SP1
phenotype: Qa-2-6C10+CD69+
|
Gene expression data from SP1 thymocytes with phenotype of Qa-2-6C10+CD69+
Mouse_SP1-3
|
| Sample_geo_accession | GSM744590
| | Sample_status | Public on Feb 13 2012
| | Sample_submission_date | Jun 19 2011
| | Sample_last_update_date | Feb 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Thymi from mice with 6-8 wks of age were pooled. Cells were purified according to the sample description via FACS Arial I. Trizol was added directly to the purified cells without any further culture.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Qing,,Ge
| | Sample_contact_email | qingyjb@gmail.com
| | Sample_contact_phone | 8610-82802593
| | Sample_contact_fax | 8610-82801436
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Peking University Health Science Center
| | Sample_contact_address | 38 Xueyuan Road
| | Sample_contact_city | Beijing
| | Sample_contact_zip/postal_code | 100191
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM744nnn/GSM744590/suppl/GSM744590_110413-07573A_SP1_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE30083
| | Sample_data_row_count | 45037
| | |
|
GSM744591 | GPL1261 |
|
SP2, biological rep3
|
SP2
|
strain: C57BL/6
tissue: thymus
age: 6-8 wks
cd4 single positive (sp) thymocyte subset: SP2
phenotype: Qa-2-6C10-CD69+
|
Gene expression data from SP2 thymocytes with phenotype of Qa-2-6C10-CD69+
Mouse_SP2-3
|
| Sample_geo_accession | GSM744591
| | Sample_status | Public on Feb 13 2012
| | Sample_submission_date | Jun 19 2011
| | Sample_last_update_date | Feb 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Thymi from mice with 6-8 wks of age were pooled. Cells were purified according to the sample description via FACS Arial I. Trizol was added directly to the purified cells without any further culture.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Qing,,Ge
| | Sample_contact_email | qingyjb@gmail.com
| | Sample_contact_phone | 8610-82802593
| | Sample_contact_fax | 8610-82801436
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Peking University Health Science Center
| | Sample_contact_address | 38 Xueyuan Road
| | Sample_contact_city | Beijing
| | Sample_contact_zip/postal_code | 100191
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM744nnn/GSM744591/suppl/GSM744591_110413-07573A_SP2_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE30083
| | Sample_data_row_count | 45037
| | |
|
GSM744592 | GPL1261 |
|
SP3, biological rep3
|
SP3
|
strain: C57BL/6
tissue: thymus
age: 6-8 wks
cd4 single positive (sp) thymocyte subset: SP3
phenotype: Qa-2-6C10-CD69-
|
Gene expression data from SP3 thymocytes with phenotype of Qa-2-6C10-CD69-
Mouse_SP3-3
|
| Sample_geo_accession | GSM744592
| | Sample_status | Public on Feb 13 2012
| | Sample_submission_date | Jun 19 2011
| | Sample_last_update_date | Feb 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Thymi from mice with 6-8 wks of age were pooled. Cells were purified according to the sample description via FACS Arial I. Trizol was added directly to the purified cells without any further culture.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Qing,,Ge
| | Sample_contact_email | qingyjb@gmail.com
| | Sample_contact_phone | 8610-82802593
| | Sample_contact_fax | 8610-82801436
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Peking University Health Science Center
| | Sample_contact_address | 38 Xueyuan Road
| | Sample_contact_city | Beijing
| | Sample_contact_zip/postal_code | 100191
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM744nnn/GSM744592/suppl/GSM744592_110413-07573A_SP3_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE30083
| | Sample_data_row_count | 45037
| | |
|
GSM744593 | GPL1261 |
|
SP4, biological rep3
|
SP4
|
strain: C57BL/6
tissue: thymus
age: 6-8 wks
cd4 single positive (sp) thymocyte subset: SP4
phenotype: Qa-2+6C10-CD69-
|
Gene expression data from SP4 thymocytes with phenotype of Qa-2+6C10-CD69-
Mouse_SP4-3
|
| Sample_geo_accession | GSM744593
| | Sample_status | Public on Feb 13 2012
| | Sample_submission_date | Jun 19 2011
| | Sample_last_update_date | Feb 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Thymi from mice with 6-8 wks of age were pooled. Cells were purified according to the sample description via FACS Arial I. Trizol was added directly to the purified cells without any further culture.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Qing,,Ge
| | Sample_contact_email | qingyjb@gmail.com
| | Sample_contact_phone | 8610-82802593
| | Sample_contact_fax | 8610-82801436
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Peking University Health Science Center
| | Sample_contact_address | 38 Xueyuan Road
| | Sample_contact_city | Beijing
| | Sample_contact_zip/postal_code | 100191
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM744nnn/GSM744593/suppl/GSM744593_110413-07573A_SP4_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE30083
| | Sample_data_row_count | 45037
| | |
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