Search results for the GEO ID: GSE30127  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM745883 | GPL570 |
|
hESC_H7_rep1
|
human embryonic stem cells, line H7
|
cell line/cell type: hESC H7 cell line
|
|
| Sample_geo_accession | GSM745883
| | Sample_status | Public on Jun 22 2011
| | Sample_submission_date | Jun 21 2011
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using a PicoPure RNA isolation kit (Arcturus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Human GeneChip U133 Plus 2
| | Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| | Sample_data_processing | The array quality was assessed and expression values generated using RMA Expresss 0.5. The data processing was achieved using R (2.11.1) to run oneChannelGUI (1.14.5) to utilize limma (3.43).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Susan,,Fisher
| | Sample_contact_laboratory | Fisher
| | Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 513 PARNASSUS AVE
| | Sample_contact_city | SAN FRANCISCO
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94143
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM745nnn/GSM745883/suppl/GSM745883.CEL.gz
| | Sample_series_id | GSE30127
| | Sample_data_row_count | 54675
| | |
|
GSM745884 | GPL570 |
|
hESC_H7_rep2
|
human embryonic stem cells, line H7
|
cell line/cell type: hESC H7 cell line
|
|
| Sample_geo_accession | GSM745884
| | Sample_status | Public on Jun 22 2011
| | Sample_submission_date | Jun 21 2011
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using a PicoPure RNA isolation kit (Arcturus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Human GeneChip U133 Plus 2
| | Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| | Sample_data_processing | The array quality was assessed and expression values generated using RMA Expresss 0.5. The data processing was achieved using R (2.11.1) to run oneChannelGUI (1.14.5) to utilize limma (3.43).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Susan,,Fisher
| | Sample_contact_laboratory | Fisher
| | Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 513 PARNASSUS AVE
| | Sample_contact_city | SAN FRANCISCO
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94143
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM745nnn/GSM745884/suppl/GSM745884.CEL.gz
| | Sample_series_id | GSE30127
| | Sample_data_row_count | 54675
| | |
|
GSM745885 | GPL570 |
|
hESC_H7_rep3
|
human embryonic stem cells, line H7
|
cell line/cell type: hESC H7 cell line
|
|
| Sample_geo_accession | GSM745885
| | Sample_status | Public on Jun 22 2011
| | Sample_submission_date | Jun 21 2011
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using a PicoPure RNA isolation kit (Arcturus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Human GeneChip U133 Plus 2
| | Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| | Sample_data_processing | The array quality was assessed and expression values generated using RMA Expresss 0.5. The data processing was achieved using R (2.11.1) to run oneChannelGUI (1.14.5) to utilize limma (3.43).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Susan,,Fisher
| | Sample_contact_laboratory | Fisher
| | Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 513 PARNASSUS AVE
| | Sample_contact_city | SAN FRANCISCO
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94143
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM745nnn/GSM745885/suppl/GSM745885.CEL.gz
| | Sample_series_id | GSE30127
| | Sample_data_row_count | 54675
| | |
|
GSM745886 | GPL570 |
|
TBPC_colony_rep1
|
trophoblast progenitor cell culture from chorion of placenta, colonies
|
cell line/cell type: TBPC colony
|
|
| Sample_geo_accession | GSM745886
| | Sample_status | Public on Jun 22 2011
| | Sample_submission_date | Jun 21 2011
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using a PicoPure RNA isolation kit (Arcturus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Human GeneChip U133 Plus 2
| | Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| | Sample_data_processing | The array quality was assessed and expression values generated using RMA Expresss 0.5. The data processing was achieved using R (2.11.1) to run oneChannelGUI (1.14.5) to utilize limma (3.43).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Susan,,Fisher
| | Sample_contact_laboratory | Fisher
| | Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 513 PARNASSUS AVE
| | Sample_contact_city | SAN FRANCISCO
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94143
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM745nnn/GSM745886/suppl/GSM745886.CEL.gz
| | Sample_series_id | GSE30127
| | Sample_data_row_count | 54675
| | |
|
GSM745887 | GPL570 |
|
TBPC_colony_rep2
|
trophoblast progenitor cell culture from chorion of placenta, colonies
|
cell line/cell type: TBPC colony
|
|
| Sample_geo_accession | GSM745887
| | Sample_status | Public on Jun 22 2011
| | Sample_submission_date | Jun 21 2011
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using a PicoPure RNA isolation kit (Arcturus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Human GeneChip U133 Plus 2
| | Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| | Sample_data_processing | The array quality was assessed and expression values generated using RMA Expresss 0.5. The data processing was achieved using R (2.11.1) to run oneChannelGUI (1.14.5) to utilize limma (3.43).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Susan,,Fisher
| | Sample_contact_laboratory | Fisher
| | Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 513 PARNASSUS AVE
| | Sample_contact_city | SAN FRANCISCO
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94143
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM745nnn/GSM745887/suppl/GSM745887.CEL.gz
| | Sample_series_id | GSE30127
| | Sample_data_row_count | 54675
| | |
|
GSM745888 | GPL570 |
|
TBPC_colony_rep3
|
trophoblast progenitor cell culture from chorion of placenta, colonies
|
cell line/cell type: TBPC colony
|
|
| Sample_geo_accession | GSM745888
| | Sample_status | Public on Jun 22 2011
| | Sample_submission_date | Jun 21 2011
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using a PicoPure RNA isolation kit (Arcturus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Human GeneChip U133 Plus 2
| | Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| | Sample_data_processing | The array quality was assessed and expression values generated using RMA Expresss 0.5. The data processing was achieved using R (2.11.1) to run oneChannelGUI (1.14.5) to utilize limma (3.43).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Susan,,Fisher
| | Sample_contact_laboratory | Fisher
| | Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 513 PARNASSUS AVE
| | Sample_contact_city | SAN FRANCISCO
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94143
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM745nnn/GSM745888/suppl/GSM745888.CEL.gz
| | Sample_series_id | GSE30127
| | Sample_data_row_count | 54675
| | |
|
GSM745889 | GPL570 |
|
TBPC_monolayer_rep1
|
trophoblast progenitor cell culture from chorion of placenta, monolayer
|
cell line/cell type: TBPC monolayer
|
|
| Sample_geo_accession | GSM745889
| | Sample_status | Public on Jun 22 2011
| | Sample_submission_date | Jun 21 2011
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using a PicoPure RNA isolation kit (Arcturus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Human GeneChip U133 Plus 2
| | Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| | Sample_data_processing | The array quality was assessed and expression values generated using RMA Expresss 0.5. The data processing was achieved using R (2.11.1) to run oneChannelGUI (1.14.5) to utilize limma (3.43).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Susan,,Fisher
| | Sample_contact_laboratory | Fisher
| | Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 513 PARNASSUS AVE
| | Sample_contact_city | SAN FRANCISCO
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94143
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM745nnn/GSM745889/suppl/GSM745889.CEL.gz
| | Sample_series_id | GSE30127
| | Sample_data_row_count | 54675
| | |
|
GSM745890 | GPL570 |
|
TBPC_monolayer_rep2
|
trophoblast progenitor cell culture from chorion of placenta, monolayer
|
cell line/cell type: TBPC monolayer
|
|
| Sample_geo_accession | GSM745890
| | Sample_status | Public on Jun 22 2011
| | Sample_submission_date | Jun 21 2011
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using a PicoPure RNA isolation kit (Arcturus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Human GeneChip U133 Plus 2
| | Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| | Sample_data_processing | The array quality was assessed and expression values generated using RMA Expresss 0.5. The data processing was achieved using R (2.11.1) to run oneChannelGUI (1.14.5) to utilize limma (3.43).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Susan,,Fisher
| | Sample_contact_laboratory | Fisher
| | Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 513 PARNASSUS AVE
| | Sample_contact_city | SAN FRANCISCO
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94143
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM745nnn/GSM745890/suppl/GSM745890.CEL.gz
| | Sample_series_id | GSE30127
| | Sample_data_row_count | 54675
| | |
|
GSM745891 | GPL570 |
|
villous_trophoblast_rep1
|
primary villous trophoblasts from placenta
|
cell line/cell type: CTB primary cells
|
|
| Sample_geo_accession | GSM745891
| | Sample_status | Public on Jun 22 2011
| | Sample_submission_date | Jun 21 2011
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using a PicoPure RNA isolation kit (Arcturus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Human GeneChip U133 Plus 2
| | Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| | Sample_data_processing | The array quality was assessed and expression values generated using RMA Expresss 0.5. The data processing was achieved using R (2.11.1) to run oneChannelGUI (1.14.5) to utilize limma (3.43).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Susan,,Fisher
| | Sample_contact_laboratory | Fisher
| | Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 513 PARNASSUS AVE
| | Sample_contact_city | SAN FRANCISCO
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94143
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM745nnn/GSM745891/suppl/GSM745891.CEL.gz
| | Sample_series_id | GSE30127
| | Sample_data_row_count | 54675
| | |
|
GSM745892 | GPL570 |
|
villous_trophoblast_rep2
|
primary villous trophoblasts from placenta
|
cell line/cell type: CTB primary cells
|
|
| Sample_geo_accession | GSM745892
| | Sample_status | Public on Jun 22 2011
| | Sample_submission_date | Jun 21 2011
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using a PicoPure RNA isolation kit (Arcturus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Human GeneChip U133 Plus 2
| | Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| | Sample_data_processing | The array quality was assessed and expression values generated using RMA Expresss 0.5. The data processing was achieved using R (2.11.1) to run oneChannelGUI (1.14.5) to utilize limma (3.43).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Susan,,Fisher
| | Sample_contact_laboratory | Fisher
| | Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 513 PARNASSUS AVE
| | Sample_contact_city | SAN FRANCISCO
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94143
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM745nnn/GSM745892/suppl/GSM745892.CEL.gz
| | Sample_series_id | GSE30127
| | Sample_data_row_count | 54675
| | |
|
GSM745893 | GPL570 |
|
villous_trophoblast_rep3
|
primary villous trophoblasts from placenta
|
cell line/cell type: CTB primary cells
|
|
| Sample_geo_accession | GSM745893
| | Sample_status | Public on Jun 22 2011
| | Sample_submission_date | Jun 21 2011
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using a PicoPure RNA isolation kit (Arcturus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized on Human GeneChip U133 Plus 2
| | Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| | Sample_data_processing | The array quality was assessed and expression values generated using RMA Expresss 0.5. The data processing was achieved using R (2.11.1) to run oneChannelGUI (1.14.5) to utilize limma (3.43).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Susan,,Fisher
| | Sample_contact_laboratory | Fisher
| | Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 513 PARNASSUS AVE
| | Sample_contact_city | SAN FRANCISCO
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94143
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM745nnn/GSM745893/suppl/GSM745893.CEL.gz
| | Sample_series_id | GSE30127
| | Sample_data_row_count | 54675
| | |
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