Search results for the GEO ID: GSE30159  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM746837 | GPL570 |
|
Bone biopsy_pre_1
|
Bone biposy pre
|
gender: female
age: 50
adenoma: pituitary
tissue: bone
biopsy collection: pre-surgery
time pre_post surgery (years): 0.28
|
ENS Pre 11_1.CEL
|
| Sample_geo_accession | GSM746837
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746837/suppl/GSM746837_ENS_Pre_11_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746838 | GPL570 |
|
Bone biopsy_pre_2
|
Bone biposy pre
|
gender: female
age: 37
adenoma: pituitary
tissue: bone
biopsy collection: pre-surgery
time pre_post surgery (years): 0.23
|
Bus Pre 65_1.CEL
|
| Sample_geo_accession | GSM746838
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746838/suppl/GSM746838_Bus_Pre_65_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746839 | GPL570 |
|
Bone biopsy_pre_3
|
Bone biposy pre
|
gender: female
age: 30
adenoma: pituitary
tissue: bone
biopsy collection: pre-surgery
time pre_post surgery (years): 0.15
|
LJB Pre 21_1.CEL
|
| Sample_geo_accession | GSM746839
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746839/suppl/GSM746839_LJB_Pre_21_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746840 | GPL570 |
|
Bone biopsy_pre_4
|
Bone biposy pre
|
gender: female
age: 41
adenoma: adrenal
tissue: bone
biopsy collection: pre-surgery
time pre_post surgery (years): 0.53
|
AGVA Pre 1_1.CEL
|
| Sample_geo_accession | GSM746840
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746840/suppl/GSM746840_AGVA_Pre_1_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746841 | GPL570 |
|
Bone biopsy_pre_5
|
Bone biposy pre
|
gender: female
age: 21
adenoma: adrenal
tissue: bone
biopsy collection: pre-surgery
time pre_post surgery (years): 0.15
|
MAH Pre 17_1.CEL
|
| Sample_geo_accession | GSM746841
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746841/suppl/GSM746841_MAH_Pre_17_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746842 | GPL570 |
|
Bone biopsy_pre_6
|
Bone biposy pre
|
gender: female
age: 28
adenoma: pituitary
tissue: bone
biopsy collection: pre-surgery
time pre_post surgery (years): 0.28
|
KHJ Pre 35_1.CEL
|
| Sample_geo_accession | GSM746842
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746842/suppl/GSM746842_KHJ_Pre_35_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746843 | GPL570 |
|
Bone biopsy_pre_7
|
Bone biposy pre
|
gender: female
age: 44
adenoma: adrenal
tissue: bone
biopsy collection: pre-surgery
time pre_post surgery (years): 0.25
|
Pre ECA 3_1.CEL
|
| Sample_geo_accession | GSM746843
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746843/suppl/GSM746843_Pre_ECA_3_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746844 | GPL570 |
|
Bone biopsy_pre_8
|
Bone biposy pre
|
gender: male
age: 31
adenoma: pituitary
tissue: bone
biopsy collection: pre-surgery
time pre_post surgery (years): 0.17
|
Pre TAH 15_1.CEL
|
| Sample_geo_accession | GSM746844
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746844/suppl/GSM746844_Pre_TAH_15_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746845 | GPL570 |
|
Bone biopsy_pre_9
|
Bone biposy pre
|
gender: female
age: 41
adenoma: pituitary
tissue: bone
biopsy collection: pre-surgery
time pre_post surgery (years): 0.14
|
RM Pre 23_1.CEL
|
| Sample_geo_accession | GSM746845
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746845/suppl/GSM746845_RM_Pre_23_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746846 | GPL570 |
|
Bone biopsy_post_1
|
Bone biopsy post
|
gender: female
age: 51
adenoma: pituitary
tissue: bone
biopsy collection: post-surgery
time pre_post surgery (years): 0.28
|
ENS Post 12_1.CEL
|
| Sample_geo_accession | GSM746846
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746846/suppl/GSM746846_ENS_Post_12_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746847 | GPL570 |
|
Bone biopsy_post_2
|
Bone biopsy post
|
gender: female
age: 37
adenoma: pituitary
tissue: bone
biopsy collection: post-surgery
time pre_post surgery (years): 0.23
|
Bus Post 66_1.CEL
|
| Sample_geo_accession | GSM746847
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746847/suppl/GSM746847_Bus_Post_66_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746848 | GPL570 |
|
Bone biopsy_post_3
|
Bone biopsy post
|
gender: female
age: 31
adenoma: pituitary
tissue: bone
biopsy collection: post-surgery
time pre_post surgery (years): 0.15
|
LJB Post 22_1.CEL
|
| Sample_geo_accession | GSM746848
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746848/suppl/GSM746848_LJB_Post_22_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746849 | GPL570 |
|
Bone biopsy_post_4
|
Bone biopsy post
|
gender: female
age: 42
adenoma: adrenal
tissue: bone
biopsy collection: post-surgery
time pre_post surgery (years): 0.53
|
AGVA Prost 2_1.CEL
|
| Sample_geo_accession | GSM746849
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746849/suppl/GSM746849_AGVA_Prost_2_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746850 | GPL570 |
|
Bone biopsy_post_5
|
Bone biopsy post
|
gender: female
age: 22
adenoma: adrenal
tissue: bone
biopsy collection: post-surgery
time pre_post surgery (years): 0.15
|
MAH Post 18_1.CEL
|
| Sample_geo_accession | GSM746850
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746850/suppl/GSM746850_MAH_Post_18_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746851 | GPL570 |
|
Bone biopsy_post_6
|
Bone biopsy post
|
gender: female
age: 28
adenoma: pituitary
tissue: bone
biopsy collection: post-surgery
time pre_post surgery (years): 0.28
|
KHJ Post 36_1.CEL
|
| Sample_geo_accession | GSM746851
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746851/suppl/GSM746851_KHJ_Post_36_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746852 | GPL570 |
|
Bone biopsy_post_7
|
Bone biopsy post
|
gender: female
age: 45
adenoma: adrenal
tissue: bone
biopsy collection: post-surgery
time pre_post surgery (years): 0.25
|
Post ECA 4_1.CEL
|
| Sample_geo_accession | GSM746852
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746852/suppl/GSM746852_Post_ECA_4_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746853 | GPL570 |
|
Bone biopsy_post_8
|
Bone biopsy post
|
gender: male
age: 32
adenoma: pituitary
tissue: bone
biopsy collection: post-surgery
time pre_post surgery (years): 0.17
|
Post TAH 16_1.CEL
|
| Sample_geo_accession | GSM746853
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746853/suppl/GSM746853_Post_TAH_16_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
GSM746854 | GPL570 |
|
Bone biopsy_post_9
|
Bone biopsy post
|
gender: female
age: 42
adenoma: pituitary
tissue: bone
biopsy collection: post-surgery
time pre_post surgery (years): 0.14
|
RM Post 24_1.CEL
|
| Sample_geo_accession | GSM746854
| | Sample_status | Public on Apr 08 2012
| | Sample_submission_date | Jun 22 2011
| | Sample_last_update_date | Apr 08 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
| | Sample_hyb_protocol | The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
| | Sample_scan_protocol | Signal intensities were detected by Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tove,,Lekva
| | Sample_contact_email | tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
| | Sample_contact_department | Section of Specialized Endocrinology and Institute for Internal Medicine
| | Sample_contact_institute | OUS-HF, Rikshospitalet
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM746nnn/GSM746854/suppl/GSM746854_RM_Post_24_1.CEL.gz
| | Sample_series_id | GSE30159
| | Sample_data_row_count | 54675
| | |
|
| |
| |
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